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Revision as of 08:23, 15 June 2012

Name:pre-cartilage condensation
Definition:"A closely packed aggregation of mesenchymal cells just prior to their differentiation into embryonic cartilage." [1]
Xrefs:
links:

AEO:0000150

EHDAA2:0003150

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0005856(developing mesenchymal condensation)



Children

is a:UBERON:0010349 (otic capsule pre-cartilage condensation),UBERON:0010882 (limb bone pre-cartilage condensation),UBERON:0010886 (hindlimb bone pre-cartilage condensation),UBERON:0011095 (vertebra pre-cartilage condensation)
develops from:UBERON:0005863 (cartilaginous condensation)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005866 (pre-cartilage condensation), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
1.25e-162FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_73900a9c2c5738e0344c84ed3dad2680p@chr3:174737010..174737023, +
1.25e-162FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_73900a9c2c5738e0344c84ed3dad2680p@chr3:174737010..174737023, +
3.92e-140FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_2b0de687050566a409ab35a62e72d1e0p4@PAX1
3.92e-140FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_2b0de687050566a409ab35a62e72d1e0p4@PAX1
4.22e-99FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_07368171f53d0508eec9b2cd7755b7efp@chr5:30104176..30104187, -
4.22e-99FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_07368171f53d0508eec9b2cd7755b7efp@chr5:30104176..30104187, -
1.06e-78FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_865fc49cd5c12390b96aac0b5e4ad5d9p4@NKX3-2
1.06e-78FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_865fc49cd5c12390b96aac0b5e4ad5d9p4@NKX3-2
2.52e-71FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_57497237141d6c99eb91f0efdda58072p@chr9:114135497..114135526, -
2.52e-71FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_57497237141d6c99eb91f0efdda58072p@chr9:114135497..114135526, -
7.4e-71FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_13431131ded31b46122dd2e2d0d82847p@chr2:241897125..241897142, -
7.4e-71FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_13431131ded31b46122dd2e2d0d82847p@chr2:241897125..241897142, -
6.33e-70FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_7cf779333dd9008ae9a9facc825a6ed6p@chr3:80727046..80727051, -
6.33e-70FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_7cf779333dd9008ae9a9facc825a6ed6p@chr3:80727046..80727051, -
4.8e-67FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_aa430c7c351f16f460becee5b0d3856ep15@SNED1
4.8e-67FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_aa430c7c351f16f460becee5b0d3856ep15@SNED1
1.24e-66FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_1f155b7d07e2bcbcdd628313e7016369p20@CAPZB
1.24e-66FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_1f155b7d07e2bcbcdd628313e7016369p20@CAPZB
1.26e-62FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_b44bc85d1d9445f5b66d308e3f0aa3a2p@chr1:19778678..19778689, -
1.26e-62FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_b44bc85d1d9445f5b66d308e3f0aa3a2-, p@chr1:19778678..19778689
1.1e-59FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_1ae6f5804130f960959ce3696c79259dp@chr2:241897189..241897221, -
1.1e-59FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_1ae6f5804130f960959ce3696c79259dp@chr2:241897189..241897221, -
1.55e-57FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_cf371935b8371b0a4c1edd81cc5ce812p1@uc010aki.1
1.55e-57FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_cf371935b8371b0a4c1edd81cc5ce812p1@uc010aki.1
4.09e-56FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_e52cbab001db57bd1032f479f0114f69p6@SIX4
4.09e-56FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_e52cbab001db57bd1032f479f0114f69p6@SIX4
3.74e-53FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_e998ba3141b246c3edfea51deeac5545p3@uc010aki.1
3.74e-53FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_e998ba3141b246c3edfea51deeac5545p3@uc010aki.1
1.15e-51FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_971216dac47a0e857b38950e06c33f75p3@PAX1
1.15e-51FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_971216dac47a0e857b38950e06c33f75p3@PAX1
2.3e-51FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_fba3f3db663daf9094f09c9de38d09fdp@chr10:81923378..81923389, -
2.3e-51FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_fba3f3db663daf9094f09c9de38d09fdp@chr10:81923378..81923389, -
3.24e-51FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_edcdfce066744d61ff8f1d234c309b0dp@chr2:12248310..12248334, -
3.24e-51FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_edcdfce066744d61ff8f1d234c309b0dp@chr2:12248310..12248334, -
8.0e-51FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_f3c81e32a7d2ce34762da6060d04c202p19@HDAC9
8.0e-51FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_f3c81e32a7d2ce34762da6060d04c202p19@HDAC9
5.06e-49FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_96854618ce51acd9a30b35a350686bbe-, p@chr7:158224707..158224729
5.06e-49FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_96854618ce51acd9a30b35a350686bbep@chr7:158224707..158224729, -
5.24e-48FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_d8cc5e40c6f80488f9d6d096eed06845p@chr1:65888177..65888194, +
5.24e-48FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_d8cc5e40c6f80488f9d6d096eed06845+, p@chr1:65888177..65888194
2.98e-45FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_2fd7f2eca9842248b0e78fa03783791ep3@NKX3-2
2.98e-45FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_2fd7f2eca9842248b0e78fa03783791ep3@NKX3-2
2.92e-44FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_b3c85fea8825688195f3aba58da61a23p1@MGC27382
2.92e-44FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_b3c85fea8825688195f3aba58da61a23p1@MGC27382
5.38e-44FFCP PHASE1:Mm9::chr1:24217213..24217226,+#_021d67a6b0e73ace9cee5d2936ae9539p@chr1:24217213..24217226, +
5.38e-44FFCP PHASE2:Mm9::chr1:24217213..24217226,+#_021d67a6b0e73ace9cee5d2936ae9539p@chr1:24217213..24217226, +
1.71e-43FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_1b318f08ba92d4e3978311369d00ab6ap18@HDAC9
1.71e-43FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_1b318f08ba92d4e3978311369d00ab6ap18@HDAC9
1.48e-40FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_3d08e6b4520d5f10d6b70657a91620cc-, p@chr9:33028063..33028067
1.48e-40FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_3d08e6b4520d5f10d6b70657a91620ccp@chr9:33028063..33028067, -
1.48e-40FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_3d08e6b4520d5f10d6b70657a91620ccp@chr13:24914614..24914622, -
1.48e-40FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_3d08e6b4520d5f10d6b70657a91620ccp@chr13:24914614..24914622, -
1.64e-40FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_2ed4ae431a18e0bbe7e212b69b46ec0dp1@PAX1
1.64e-40FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_2ed4ae431a18e0bbe7e212b69b46ec0dp1@PAX1
1.81e-40FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_90952361378b3c2fb595b5201d29e1eep5@PTGFR
1.81e-40FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_90952361378b3c2fb595b5201d29e1eep5@PTGFR
2.13e-40FFCP PHASE1:Hg19::chr2:241897363..241897398,+#_baf82e498c04e3e64750059112b729ebp@chr2:241897363..241897398, +
2.13e-40FFCP PHASE2:Hg19::chr2:241897363..241897398,+#_baf82e498c04e3e64750059112b729ebp@chr2:241897363..241897398, +
3.04e-39FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_c24261532dba0be39b2d2c3c8168b601p2@PAX1
3.04e-39FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_c24261532dba0be39b2d2c3c8168b601p2@PAX1
7.19e-39FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_79ff2e47f7be9d97d3869fbf3cbe7082p16@HDAC9
7.19e-39FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_79ff2e47f7be9d97d3869fbf3cbe7082p@chr5:140887761..140887777, +
7.19e-39FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_79ff2e47f7be9d97d3869fbf3cbe7082p16@HDAC9
7.19e-39FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_79ff2e47f7be9d97d3869fbf3cbe7082p@chr5:140887761..140887777, +
1.24e-38FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_1dc783186b2bc1435555bfe327e98c15p4@NUP54
1.24e-38FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_1dc783186b2bc1435555bfe327e98c15p4@NUP54
2.08e-38FFCP PHASE2:Hg19::chr2:241938405..241938416,+#_76b73905557e560484c61850baf3176fp@chr2:241938405..241938416, +
2.08e-38FFCP PHASE1:Hg19::chr2:241938405..241938416,+#_76b73905557e560484c61850baf3176fp@chr2:241938405..241938416, +
3.34e-38FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_fdc98642e4b9ac72765cb6ac30a8244ep1@NKX3-2
3.34e-38FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_fdc98642e4b9ac72765cb6ac30a8244ep1@NKX3-2
3.68e-38FFCP PHASE1:Hg19::chr6:158490457..158490470,+#_5fe1e5c72a1a53c230a166c9a1b54e45p10@SYNJ2
3.68e-38FFCP PHASE2:Hg19::chr6:158490457..158490470,+#_5fe1e5c72a1a53c230a166c9a1b54e45p10@SYNJ2
5.39e-38FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_c7646940ee5c85c8b4fdc9443890d7eap@chr9:16138889..16138902, -
5.39e-38FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_c7646940ee5c85c8b4fdc9443890d7eap@chr9:16138889..16138902, -
8.66e-38FFCP PHASE1:Hg19::chr8:78311303..78311320,+#_1a1e4e80a05b983c8f15c4ca35b56cc8p2@ENST00000518706
8.66e-38FFCP PHASE2:Hg19::chr8:78311303..78311320,+#_1a1e4e80a05b983c8f15c4ca35b56cc8p2@ENST00000518706
2.96e-37FFCP PHASE2:Hg19::chr21:39705383..39705394,-#_130c49aa5e33f908b2eed7c3ac09e8aep1@ENST00000436845
2.96e-37FFCP PHASE1:Hg19::chr21:39705383..39705394,-#_130c49aa5e33f908b2eed7c3ac09e8aep1@ENST00000436845
6.92e-37FFCP PHASE2:Hg19::chr9:123239747..123239765,-#_7d7931b33d82482412c8c9f07ed07c1ap12@CDK5RAP2
6.92e-37FFCP PHASE1:Hg19::chr9:123239747..123239765,-#_7d7931b33d82482412c8c9f07ed07c1ap12@CDK5RAP2
3.28e-36FFCP PHASE1:Hg19::chr1:78695298..78695311,+#_d1a0bd5987ca5bee00d9af29aff5fd2dp1@ENST00000413519
3.28e-36FFCP PHASE2:Hg19::chr1:78695298..78695311,+#_d1a0bd5987ca5bee00d9af29aff5fd2dp1@ENST00000413519
9.62e-35FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_05ebd8e6e128b3b3e2a97041d3cade3dp4@PAX9
9.62e-35FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_05ebd8e6e128b3b3e2a97041d3cade3dp4@PAX9
1.8e-34FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_e9358b07626c117cc8fb7cd434aa614cp@chr7:100202784..100202796, -
1.8e-34FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_e9358b07626c117cc8fb7cd434aa614cp@chr7:100202784..100202796, -
3.69e-34FFCP PHASE1:Hg19::chr12:54422268..54422278,+#_6ef36d8fcc878153b95ca5f3cd26f7f3p8@HOXC6
3.69e-34FFCP PHASE2:Hg19::chr12:54422268..54422278,+#_6ef36d8fcc878153b95ca5f3cd26f7f3p8@HOXC6
5.52e-34FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_7a84ebcb434337cdbfd3f7fae06c9621p6@CCDC86
5.52e-34FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_7a84ebcb434337cdbfd3f7fae06c9621p6@CCDC86
1.43e-33FFCP PHASE1:Hg19::chr20:21695435..21695452,+#_318e8faa251514f603de4953b28fc6e5p@chr20:21695435..21695452, +
1.43e-33FFCP PHASE2:Hg19::chr20:21695435..21695452,+#_318e8faa251514f603de4953b28fc6e5p@chr20:21695435..21695452, +
2.03e-33FFCP PHASE2:Mm9::chr15:78817557..78817567,+#_656d9e710202c11e5f03f95012977c49p@chr15:78817557..78817567, +
2.03e-33FFCP PHASE1:Mm9::chr15:78817557..78817567,+#_656d9e710202c11e5f03f95012977c49p@chr15:78817557..78817567, +
3.37e-33FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_0c29bc030c0d47fa9fcd0e13038ae106p26@Myo18a
3.37e-33FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_0c29bc030c0d47fa9fcd0e13038ae106p26@Myo18a
4.33e-33FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_f4d8849d31c7429ed66c621519a205c9p@chr8:75097542..75097549, +
4.33e-33FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_f4d8849d31c7429ed66c621519a205c9p@chr9:21934585..21934591, -
4.33e-33FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_f4d8849d31c7429ed66c621519a205c9p@chr9:21934585..21934591, -
4.33e-33FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_f4d8849d31c7429ed66c621519a205c9p@chr2:32482372..32482381, +

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