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(Created page with "{{UBERON |id=UBERON:0005893 |name=leg bone |namespace= |def="A bone that is part of the region of the hindlimb that includes the zeugopod and stylopod. Examples: patella, ...")
 
 
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{{UBERON
 
{{UBERON
|id=UBERON:0005893
+
|alt_id=
|name=leg bone
 
|namespace=
 
|def="A bone that is part of the region of the hindlimb that includes the zeugopod and stylopod. Examples: patella, femur, tibia. Counter-examples: any foot phalanx" [UBERON:cjm]
 
|xref=MA:0000670;;MESH:A.02.835.232.500
 
|is_a=UBERON:0003464
 
|synonym=
 
 
|comment=
 
|comment=
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def="A bone that is part of the region of the hindlimb that includes the zeugopod and stylopod. Examples: patella, femur, tibia. Counter-examples: any foot phalanx" [UBERON:cjm]
|subset=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=UBERON:0005893
 +
|is_a=UBERON:0003464
 +
|is_obsolete=
 
|located_in=
 
|located_in=
|part_of=
+
|name=leg bone
 +
|namespace=FANTOM
 +
|obo_creation_date=
 +
|part_of=UBERON:0000978
 +
|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
+
|subset=
|preceded_by=
+
|synonym=
 +
|union_of=
 +
|xref=MA:0000670;;MESH:A.02.835.232.500
 
}}
 
}}

Latest revision as of 08:55, 12 September 2014

Name:leg bone
Namespace:FANTOM
Definition:"A bone that is part of the region of the hindlimb that includes the zeugopod and stylopod. Examples: patella, femur, tibia. Counter-examples: any foot phalanx" [UBERON:cjm]
Xrefs:
links:

MA:0000670

MESH:A.02.835.232.500

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0003464(hindlimb bone)
part_of:UBERON:0000978(leg)



Children

is a:UBERON:0003826 (upper leg bone)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005893 (leg bone), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_b5278dd1a5982a8d218568a82dc869b1p26@Myo18a
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_b5278dd1a5982a8d218568a82dc869b1p26@Myo18a
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_55859134e9fc6af1046b060d7b29da13p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_55859134e9fc6af1046b060d7b29da13p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_55859134e9fc6af1046b060d7b29da13p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_55859134e9fc6af1046b060d7b29da13p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_55859134e9fc6af1046b060d7b29da13p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_55859134e9fc6af1046b060d7b29da13p@chr2:32482372..32482381, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_330ba55d4468568142b33c645c93c782p@chr6:51525810..51525817, +
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_330ba55d4468568142b33c645c93c782p@chr6:51525810..51525817, +
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_4d99345afedd3bedcda0d009899cd1e0p@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_4d99345afedd3bedcda0d009899cd1e0p@chr19:4876870..4876880, -
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_a3e10c7ff3a168060e705bca4f31f7aap@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_a3e10c7ff3a168060e705bca4f31f7aap@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_a3e10c7ff3a168060e705bca4f31f7aap@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_a3e10c7ff3a168060e705bca4f31f7aap@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_a3e10c7ff3a168060e705bca4f31f7aap@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_a3e10c7ff3a168060e705bca4f31f7aap@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_a3e10c7ff3a168060e705bca4f31f7aa+, p@chr6:4490674..4490679
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_a3e10c7ff3a168060e705bca4f31f7aap@chr11:67063327..67063335, +
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_d85c6218ac9a04ecbc824e58f73b79a8p@chr1:174143249..174143260, -
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_d85c6218ac9a04ecbc824e58f73b79a8p@chr1:174143249..174143260, -
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_7698c529ee19cbc7dbd8a7170168e8aep@chr6:51525869..51525891, +
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_7698c529ee19cbc7dbd8a7170168e8aep@chr6:51525869..51525891, +
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_4621f2a74c473a784abf761eda91604dp3@Asb16
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_4621f2a74c473a784abf761eda91604dp3@Asb16
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_ea94bbeaa207dd858b5b7b8f18660cf3p@chr7:133604286..133604297, -
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_ea94bbeaa207dd858b5b7b8f18660cf3p@chr7:133604286..133604297, -
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_804f05fb6e2a203aba8219f5044bc28ap5@Pla2g5
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_804f05fb6e2a203aba8219f5044bc28ap5@Pla2g5
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_2e495b8556f46d9639e4019bf4d32237p2@uc009mdq.1
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_2e495b8556f46d9639e4019bf4d32237p2@uc009mdq.1
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_2035856236373c37494fe92d059877e2p3@Mmp9
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_2035856236373c37494fe92d059877e2p3@Mmp9
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_504950468dda9d78746adecebf68909ap2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_504950468dda9d78746adecebf68909ap2@Oscar
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_504950468dda9d78746adecebf68909ap@chr1:166815111..166815121, -
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_504950468dda9d78746adecebf68909ap@chr1:166815111..166815121, -
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_da64c18fe38e372bd47929eb73e98db4+, p@chr11:75409652..75409664
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_da64c18fe38e372bd47929eb73e98db4p4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_da64c18fe38e372bd47929eb73e98db4p4@Lipc
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_da64c18fe38e372bd47929eb73e98db4p@chr11:75409652..75409664, +
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_3b8fc77a9de19fc1f553d68cd2b0e75ep6@Sp7
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_3b8fc77a9de19fc1f553d68cd2b0e75ep6@Sp7
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_04400146a475c2fb5b449a19ab8ffb2ap@chr18:76271498..76271508, +
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_04400146a475c2fb5b449a19ab8ffb2ap@chr8:126415826..126415839, +
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_04400146a475c2fb5b449a19ab8ffb2a+, p@chr18:76271498..76271508
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_04400146a475c2fb5b449a19ab8ffb2ap@chr8:126415826..126415839, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_0a265d39b43c91cc3001fac5d8eb5293p@chr2:32482387..32482399, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_0a265d39b43c91cc3001fac5d8eb5293p@chr2:32482387..32482399, +
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_4cee575818a579c41b755857d9513196p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_4cee575818a579c41b755857d9513196p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_4cee575818a579c41b755857d9513196p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_4cee575818a579c41b755857d9513196p@chr15:58649683..58649688, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_d61d7b2b227cde3759df0e6f2ac5ad21p@chr7:133590998..133591009, -
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_d61d7b2b227cde3759df0e6f2ac5ad21p@chr7:133590998..133591009, -
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_58cc4f1d507f08258826c97f2c4c1c21p2@Myoz3
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_58cc4f1d507f08258826c97f2c4c1c21p2@Myoz3
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_12c51d0818ac0bff892a4d8e9d6a6ec5p2@Myh4
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_12c51d0818ac0bff892a4d8e9d6a6ec5p2@Myh4
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_406e927588483b76d25552c0e679d5f4p@chr1:57155729..57155740, -
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_406e927588483b76d25552c0e679d5f4-, p@chr1:57155729..57155740
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_09e99e3f431afc3c4f912ee2b3285fd4p1@Msmp
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_09e99e3f431afc3c4f912ee2b3285fd4-, p@chr11:67056544..67056589
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_09e99e3f431afc3c4f912ee2b3285fd4-, p@chr11:67056544..67056589
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_09e99e3f431afc3c4f912ee2b3285fd4p1@Msmp
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_d167062aa030f329cfe42ca6693e80edp@chrY:2858251..2858257, +
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_d167062aa030f329cfe42ca6693e80edp@chrY:2858251..2858257, +
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_d167062aa030f329cfe42ca6693e80edp@chr6:90552017..90552024, +
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_d167062aa030f329cfe42ca6693e80edp@chr6:90552017..90552024, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_81800475498cebe18fa14277c04801cfp@chr6:34436258..34436292, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_81800475498cebe18fa14277c04801cfp@chr6:34436258..34436292, +
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_46b49d499201ad306858e650fe02c639p@chr11:67069796..67069817, -
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_46b49d499201ad306858e650fe02c639p@chr11:67069796..67069817, -
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_95732ad3005cc8e9a00767bd69f20a61p@chr8:107702369..107702386, +
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_95732ad3005cc8e9a00767bd69f20a61p@chr8:107702369..107702386, +
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_b051916cc392b69cb3b068c3089e954dp1@Siglec15
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_b051916cc392b69cb3b068c3089e954dp1@Siglec15
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_e90b3fbb08e90e41d796e8617e0828cap6@Atp2a1
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_e90b3fbb08e90e41d796e8617e0828cap6@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_7b5104086c9d77c956f4a0b86735b590p7@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_7b5104086c9d77c956f4a0b86735b590p7@Atp2a1
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_3d4b6a2c3d1d2416285ec076c791dfd6p@chr7:133600635..133600663, +
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_3d4b6a2c3d1d2416285ec076c791dfd6p@chr7:133592162..133592188, -
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_3d4b6a2c3d1d2416285ec076c791dfd6p@chr7:133600635..133600663, +
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_3d4b6a2c3d1d2416285ec076c791dfd6p@chr7:133592162..133592188, -
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_a053be5684bde67da6ea1212d94b923ap4@Sgca
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_a053be5684bde67da6ea1212d94b923ap4@Sgca
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_8dc3386f11f834c33dd0da533ffa86f6p1@Mepe
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_8dc3386f11f834c33dd0da533ffa86f6p1@Mepe
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_d792360bdb255ed9d821553969fd6eb5p2@Tm4sf19
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_d792360bdb255ed9d821553969fd6eb5p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_d792360bdb255ed9d821553969fd6eb5p2@Tm4sf19
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_d792360bdb255ed9d821553969fd6eb5p@chr12:81581216..81581231, +
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_00ffd75f325acd6ccbdc0e6a5d659568p@chr15:97806574..97806585, -
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_00ffd75f325acd6ccbdc0e6a5d659568p5@Col11a2
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_00ffd75f325acd6ccbdc0e6a5d659568p5@Col11a2
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_00ffd75f325acd6ccbdc0e6a5d659568p@chr15:97806574..97806585, -
1.36e-25FFCP PHASE2:Mm9::chr18:78254174..78254185,-#_1ede5630d220e347549f42ea10f08859p2@Siglec15
1.36e-25FFCP PHASE2:Mm9::chr2:180890942..180890956,-#_1ede5630d220e347549f42ea10f08859p@chr2:180890942..180890956, -