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UBERON:0009142

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Name:entire embryonic mesenchyme
Namespace:FANTOM
Xrefs:
links:

EHDAA2:0001113
EHDAA:177

EMAPA:16097
Comments:consider adding new class (EMAPA:16097) for mesenchyme of embryo (some mesenchyme is extraembryonic - e.g. amnion mesoderm)
Alt_id: UBERON:0003313

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000477(anatomical cluster),UBERON:0002050(embryonic structure),UBERON:0017650(developing mesenchymal structure)
part_of:UBERON:0000922(embryo)



Children

part of:UBERON:0003104 (mesenchyme),UBERON:0005253 (head mesenchyme),UBERON:0005256 (trunk mesenchyme)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
  • 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
  • 11539-120A9 (Mesenchymal Stem Cells - umbilical, donor1)
  • 11548-120B9 (Mesenchymal Stem Cells - Wharton's Jelly, donor1)
  • 11549-120C1 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1)
  • 11619-122A8 (Mesenchymal Stem Cells - umbilical, donor2)
  • 11628-122B8
  • 11629-122B9 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2)
  • 11700-123A8 (Mesenchymal Stem Cells - umbilical, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009142 (entire embryonic mesenchyme), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
6.46e-31FFCP PHASE1:Mm9::chr4:95246108..95246119,+#_a272d628cac5eb1c9deecc0af32a7c19p4@Fggy
6.46e-31FFCP PHASE2:Mm9::chr4:95246108..95246119,+#_a272d628cac5eb1c9deecc0af32a7c19p4@Fggy
1.91e-30FFCP PHASE1:Hg19::chr8:30242040..30242045,+#_82c19d40da440757f155ff24ab74271ap2@RBPMS
1.91e-30FFCP PHASE2:Hg19::chr8:30242040..30242045,+#_82c19d40da440757f155ff24ab74271ap2@RBPMS
2.99e-28FFCP PHASE2:Hg19::chr8:30242048..30242064,+#_33d44e245af34cf24dccb6098590aac3p1@RBPMS
2.99e-28FFCP PHASE1:Hg19::chr8:30242048..30242064,+#_33d44e245af34cf24dccb6098590aac3p1@RBPMS
5.64e-28FFCP PHASE1:Hg19::chr8:30241934..30241945,+#_af41d1b4d3c0ef195f1519b00c810625p3@RBPMS
5.64e-28FFCP PHASE2:Hg19::chr8:30241934..30241945,+#_af41d1b4d3c0ef195f1519b00c810625p3@RBPMS
6.23e-28FFCP PHASE2:Mm9::chr6:34129226..34129246,+#_c76487285a62e84e793988dc7e72b8c1p2@ENSMUST00000145644
6.23e-28FFCP PHASE1:Mm9::chr6:34129226..34129246,+#_c76487285a62e84e793988dc7e72b8c1p2@ENSMUST00000145644
6.8e-28FFCP PHASE2:Mm9::chr8:73247943..73247958,+#_09e37d0c97fef369c985813b8bf34c6cp3@Pde4c
6.8e-28FFCP PHASE1:Mm9::chr8:73247943..73247958,+#_09e37d0c97fef369c985813b8bf34c6cp3@Pde4c
2.88e-27FFCP PHASE2:Hg19::chr11:114167164..114167190,+#_7cf7d3c37d56ae5fa428a3c3562f2414p2@NNMT
2.88e-27FFCP PHASE1:Hg19::chr11:114167164..114167190,+#_7cf7d3c37d56ae5fa428a3c3562f2414p2@NNMT
3.05e-27FFCP PHASE1:Mm9::chr9:44611035..44611044,-#_6a299e3f35ff6d1895e8a583214eae51p4@Ttc36
3.05e-27FFCP PHASE2:Mm9::chr9:44611035..44611044,-#_6a299e3f35ff6d1895e8a583214eae51p4@Ttc36
5.08e-27FFCP PHASE1:Hg19::chr19:48894762..48894830,-#_06f039ce127f92056778fe087d0863d7p1@KDELR1
5.08e-27FFCP PHASE2:Hg19::chr19:48894762..48894830,-#_06f039ce127f92056778fe087d0863d7p1@KDELR1
1.09e-26FFCP PHASE1:Mm9::chr11:60622345..60622377,-#_7d7ad48ee8109664b5a526e5bcc13303p@chr11:60622345..60622377, -
1.09e-26FFCP PHASE2:Mm9::chr11:60622345..60622377,-#_7d7ad48ee8109664b5a526e5bcc13303-, p@chr11:60622345..60622377
1.25e-26FFCP PHASE1:Mm9::chr10:88996274..88996286,-#_79a49eaeebdbada323a1a80d2dcb7859p4@Nr1h4
1.25e-26FFCP PHASE2:Mm9::chr10:88996274..88996286,-#_79a49eaeebdbada323a1a80d2dcb7859p4@Nr1h4
1.81e-26FFCP PHASE1:Mm9::chr11:7097807..7097814,+#_c65d5d1134f54b2af3030f1d242deda6p2@Igfbp1
1.81e-26FFCP PHASE2:Mm9::chr11:7097807..7097814,+#_c65d5d1134f54b2af3030f1d242deda6p2@Igfbp1
2.8e-26FFCP PHASE2:Mm9::chr19:12707997..12708015,+#_e7c903a2a361e51c9e28e9be591e56efp1@Glyat
2.8e-26FFCP PHASE1:Mm9::chr19:12707997..12708015,+#_e7c903a2a361e51c9e28e9be591e56efp1@Glyat
3.19e-26FFCP PHASE1:Mm9::chr13:23931270..23931311,+#_e0b0683fe567fcc2d783c520b4ac48dap2@Slc17a3
3.19e-26FFCP PHASE2:Mm9::chr13:23931270..23931311,+#_e0b0683fe567fcc2d783c520b4ac48dap2@Slc17a3
3.4e-26FFCP PHASE2:Mm9::chr16:37621995..37622022,-#_98f5821c0fa204c9459f841522498155p@chr16:37621995..37622022, -
3.4e-26FFCP PHASE1:Mm9::chr16:37621995..37622022,-#_98f5821c0fa204c9459f841522498155p@chr16:37621995..37622022, -
4.15e-26FFCP PHASE1:Hg19::chr11:114167202..114167221,+#_a03cc347588a09b8701a38cc86206034p3@NNMT
4.15e-26FFCP PHASE2:Hg19::chr11:114167202..114167221,+#_a03cc347588a09b8701a38cc86206034p3@NNMT
6.21e-26FFCP PHASE1:Mm9::chr13:23931467..23931489,+#_335ec60d57168209b78a4413a0b8e3a9p3@Slc17a3
6.21e-26FFCP PHASE2:Mm9::chr13:23931467..23931489,+#_335ec60d57168209b78a4413a0b8e3a9p3@Slc17a3
7.91e-26FFCP PHASE1:Mm9::chr4:96330769..96330789,-#_aa0cba696cfe3965f7b4ff05ccd074e9p2@Cyp2j5
7.91e-26FFCP PHASE2:Mm9::chr4:96330769..96330789,-#_aa0cba696cfe3965f7b4ff05ccd074e9p2@Cyp2j5
1.05e-25FFCP PHASE1:Mm9::chr1:142079981..142079992,-#_05037b3f84e3e31610902e185cc7a028p3@Cfh
1.05e-25FFCP PHASE2:Mm9::chr1:142079981..142079992,-#_05037b3f84e3e31610902e185cc7a028p3@Cfh
1.26e-25FFCP PHASE1:Hg19::chr7:6523755..6523829,-#_15ba79da16b8960cc88795a38af91f73p1@DAGLB, p1@KDELR2
1.26e-25FFCP PHASE2:Hg19::chr7:6523755..6523829,-#_15ba79da16b8960cc88795a38af91f73p1@DAGLB, p1@KDELR2
1.32e-25FFCP PHASE1:Mm9::chr16:37580223..37580237,+#_82c24b93a713a6d1627703ade0fdf190p4@Hgd
1.32e-25FFCP PHASE2:Mm9::chr16:37580223..37580237,+#_82c24b93a713a6d1627703ade0fdf190p4@Hgd
1.63e-25FFCP PHASE1:Mm9::chr1:141398256..141398267,+#_4e27775e0f690722b6809e981a35ac9fp3@F13b
1.63e-25FFCP PHASE2:Mm9::chr1:141398256..141398267,+#_4e27775e0f690722b6809e981a35ac9fp3@F13b
1.79e-25FFCP PHASE1:Mm9::chr4:95246137..95246153,+#_f7ca0fc162bd59486b2ad1e94fc6e8ccp3@Fggy
1.79e-25FFCP PHASE2:Mm9::chr4:95246137..95246153,+#_f7ca0fc162bd59486b2ad1e94fc6e8ccp3@Fggy
2.13e-25FFCP PHASE2:Mm9::chr15:82624876..82624892,-#_707d7b26178f909bb5a8b99d3b451f49p5@Cyp2d26
2.13e-25FFCP PHASE1:Mm9::chr15:82624876..82624892,-#_707d7b26178f909bb5a8b99d3b451f49p5@Cyp2d26
2.19e-25FFCP PHASE2:Mm9::chr10:95305558..95305580,-#_b35f12de008c8886916e19276eac26d2p@chr10:95305558..95305580, -
2.19e-25FFCP PHASE1:Mm9::chr10:95305558..95305580,-#_b35f12de008c8886916e19276eac26d2p@chr10:95305558..95305580, -
2.31e-25FFCP PHASE2:Hg19::chr14:35183837..35183867,-#_64ce5fa46c8a41445e58070779d89bd4p2@CFL2
2.31e-25FFCP PHASE1:Hg19::chr14:35183837..35183867,-#_64ce5fa46c8a41445e58070779d89bd4p2@CFL2
2.74e-25FFCP PHASE2:Hg19::chr5:148521286..148521377,+#_3d390b15a6ba31f043fa41fef3f6f45cp2@ABLIM3
2.74e-25FFCP PHASE1:Hg19::chr5:148521286..148521377,+#_3d390b15a6ba31f043fa41fef3f6f45cp2@ABLIM3
2.77e-25FFCP PHASE1:Mm9::chr9:44609886..44609901,-#_e18d02cc11c0c5ce68109de4f1199e80p@chr9:44609886..44609901, -
2.77e-25FFCP PHASE2:Mm9::chr9:44609886..44609901,-#_e18d02cc11c0c5ce68109de4f1199e80p@chr9:44609886..44609901, -
4.16e-25FFCP PHASE2:Mm9::chr4:150283537..150283568,-#_ab64b79cfca131eba07b64aa3dd7747ap5@Park7
4.16e-25FFCP PHASE1:Mm9::chr4:150283537..150283568,-#_ab64b79cfca131eba07b64aa3dd7747ap5@Park7
4.54e-25FFCP PHASE1:Mm9::chr12:58298278..58298292,-#_00a226faa7a32e165b5db035ec032139p4@Slc25a21
4.54e-25FFCP PHASE2:Mm9::chr12:58298278..58298292,-#_00a226faa7a32e165b5db035ec032139p4@Slc25a21
4.55e-25FFCP PHASE1:Mm9::chr9:44609861..44609874,-#_df6271956634c30a31c9f147069cf57ep@chr9:44609861..44609874, -
4.55e-25FFCP PHASE2:Mm9::chr9:44609861..44609874,-#_df6271956634c30a31c9f147069cf57ep@chr9:44609861..44609874, -
4.85e-25FFCP PHASE2:Mm9::chr4:140176541..140176565,-#_60ccabdc61278ea2a5e0ebcb7af8d6ffp@chr4:140176541..140176565, -
4.85e-25FFCP PHASE1:Mm9::chr4:140176541..140176565,-#_60ccabdc61278ea2a5e0ebcb7af8d6ffp@chr4:140176541..140176565, -
5.05e-25FFCP PHASE2:Hg19::chr2:27255806..27255879,+#_5459dcb6a8f6e22af51bee7144b26a29p1@TMEM214
5.05e-25FFCP PHASE1:Hg19::chr2:27255806..27255879,+#_5459dcb6a8f6e22af51bee7144b26a29p1@TMEM214
5.09e-25FFCP PHASE2:Mm9::chr15:99733367..99733388,+#_c8cd9b25575e33e72114e2cc7687dc15p@chr15:99733367..99733388, +
5.09e-25FFCP PHASE1:Mm9::chr15:99733367..99733388,+#_c8cd9b25575e33e72114e2cc7687dc15p@chr15:99733367..99733388, +
8.37e-25FFCP PHASE2:Hg19::chr19:10946872..10946894,-#_e7e945643f65ccdfccc792d95e281c6ep1@TMED1
8.37e-25FFCP PHASE1:Hg19::chr19:10946872..10946894,-#_e7e945643f65ccdfccc792d95e281c6ep1@TMED1
8.8e-25FFCP PHASE2:Mm9::chr16:37580298..37580310,+#_5f88f4e33bd475ae0673cef5de445b47p3@Hgd
8.8e-25FFCP PHASE1:Mm9::chr16:37580298..37580310,+#_5f88f4e33bd475ae0673cef5de445b47p3@Hgd
1.03e-24FFCP PHASE1:Mm9::chr13:58224772..58224789,-#_ff184c32333358b3e9ae89cce872cbf7p@chr13:58224772..58224789, -
1.03e-24FFCP PHASE2:Mm9::chr13:58224772..58224789,-#_ff184c32333358b3e9ae89cce872cbf7p@chr13:58224772..58224789, -
1.13e-24FFCP PHASE2:Hg19::chr8:22446763..22446862,+#_bfb028628f414f97bdcefc1abd9a688ep1@PDLIM2
1.13e-24FFCP PHASE1:Hg19::chr8:22446763..22446862,+#_bfb028628f414f97bdcefc1abd9a688ep1@PDLIM2
1.21e-24FFCP PHASE1:Mm9::chr6:3938967..3938987,-#_4f7edff03a3f88a6f19f1dd0bfb9ef9ap@chr6:3938967..3938987, -
1.21e-24FFCP PHASE2:Mm9::chr6:3938967..3938987,-#_4f7edff03a3f88a6f19f1dd0bfb9ef9ap@chr6:3938967..3938987, -
1.24e-24FFCP PHASE1:Hg19::chr9:136242956..136242976,-#_f8ee005a18c614c8c0d0c688ef8e806dp2@SURF4
1.24e-24FFCP PHASE2:Hg19::chr9:136242956..136242976,-#_f8ee005a18c614c8c0d0c688ef8e806dp2@SURF4
1.24e-24FFCP PHASE2:Mm9::chr15:9265320..9265378,+#_0cbc76bdb213741a65c2537cb4af3e40p1@Ugt3a2
1.24e-24FFCP PHASE1:Mm9::chr15:9265320..9265378,+#_0cbc76bdb213741a65c2537cb4af3e40p1@Ugt3a2
1.56e-24FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_a420232e612954b5d98358077a146d38p@chr9:35685631..35685657, +
1.56e-24FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_a420232e612954b5d98358077a146d38p@chr9:35685631..35685657, +
1.68e-24FFCP PHASE2:Hg19::chr1:113249734..113249762,-#_906101ca7b551bed73d274d48c8c9291p1@RHOC
1.68e-24FFCP PHASE1:Hg19::chr1:113249734..113249762,-#_906101ca7b551bed73d274d48c8c9291p1@RHOC
1.9e-24FFCP PHASE2:Hg19::chr9:35685273..35685313,+#_feeb957907dfcae22cbe3855fdddc1eep@chr9:35685273..35685313, +
1.9e-24FFCP PHASE1:Hg19::chr9:35685273..35685313,+#_feeb957907dfcae22cbe3855fdddc1eep@chr9:35685273..35685313, +
2.03e-24FFCP PHASE2:Hg19::chr7:128470453..128470472,+#_5afe65cb6749cc64bbb1e0e00f22e4a1p1@FLNC
2.03e-24FFCP PHASE1:Hg19::chr7:128470453..128470472,+#_5afe65cb6749cc64bbb1e0e00f22e4a1p1@FLNC
2.16e-24FFCP PHASE1:Mm9::chr12:58298249..58298262,-#_563ebe181d713812c4961b5f558f0114p5@Slc25a21
2.16e-24FFCP PHASE2:Mm9::chr12:58298249..58298262,-#_563ebe181d713812c4961b5f558f0114p5@Slc25a21
2.39e-24FFCP PHASE1:Hg19::chr11:66056596..66056622,-#_cd9cd3934f2951ccfd4f67c3dc091050p1@YIF1A
2.39e-24FFCP PHASE2:Hg19::chr11:66056596..66056622,-#_cd9cd3934f2951ccfd4f67c3dc091050p1@YIF1A
2.46e-24FFCP PHASE2:Mm9::chr1:177562272..177562282,+#_da80a77862f2ecbe41a4bed300fb68c1p4@Kmo
2.46e-24FFCP PHASE1:Mm9::chr1:177562272..177562282,+#_da80a77862f2ecbe41a4bed300fb68c1p4@Kmo
3.12e-24FFCP PHASE1:Mm9::chr16:23029135..23029149,-#_2297649f324f70f40ba82723f3a8daf3p4@Kng2
3.12e-24FFCP PHASE2:Mm9::chr16:23029135..23029149,-#_2297649f324f70f40ba82723f3a8daf3p4@Kng2
3.55e-24FFCP PHASE1:Hg19::chr4:39529049..39529067,-#_56770210ea2e5de7a5a047550e72fe31p1@UGDH
3.55e-24FFCP PHASE2:Hg19::chr4:39529049..39529067,-#_56770210ea2e5de7a5a047550e72fe31p1@UGDH