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{{UBERON
 
{{UBERON
|id=UBERON:0009618
+
|alt_id=
|name=trunk paraxial mesoderm
 
|namespace=
 
|def=
 
|xref=EHDAA2:0002094
 
|is_a=UBERON:0004120;;UBERON:0005256;;UBERON:0005291
 
|synonym="trunk and cervical paraxial mesenchyme" EXACT [EHDAA2:0002094];;"trunk paraxial mesenchyme" RELATED []
 
 
|comment=
 
|comment=
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def=
|subset=
 
 
|derives_from=
 
|derives_from=
|develops_from=
+
|develops_from=UBERON:0000926
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=UBERON:0009618
 +
|is_a=UBERON:0004120 ;;UBERON:0005256
 +
|is_obsolete=
 
|located_in=
 
|located_in=
|part_of=
+
|name=trunk paraxial mesoderm
 +
|namespace=FANTOM
 +
|obo_creation_date=
 +
|part_of=UBERON:0003077;;UBERON:0005256
 +
|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
+
|subset=
|preceded_by=
+
|synonym="trunk and cervical paraxial mesenchyme" EXACT [EHDAA2:0002094];;"trunk paraxial mesenchyme" RELATED []
 +
|union_of=
 +
|xref=EHDAA2:0002094
 
}}
 
}}

Latest revision as of 09:06, 12 September 2014

Name:trunk paraxial mesoderm
Namespace:FANTOM
Xrefs:
links:
EHDAA2:0002094
Synonyms: "trunk and cervical paraxial mesenchyme" EXACT [EHDAA2:0002094]
"trunk paraxial mesenchyme" RELATED []

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004120(mesoderm-derived structure),UBERON:0005256(trunk mesenchyme)
develops_from:UBERON:0000926(mesoderm)
part_of:UBERON:0003077(paraxial mesoderm),UBERON:0005256(trunk mesenchyme)



Children

develops from:UBERON:0007282 (presumptive segmental plate)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009618 (trunk paraxial mesoderm), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.24e-58FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_ae768119794d65ea39f7ebf4a2fec174p@chrX:160838683..160838694, +
5.24e-58FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_ae768119794d65ea39f7ebf4a2fec174p@chrX:160838683..160838694, +
5.11e-50FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_eeec2ade2e71bf87828d1b66691dd526p@chrX:65748600..65748616, +
5.11e-50FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_eeec2ade2e71bf87828d1b66691dd526p@chrX:65748600..65748616, +
5.11e-50FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_eeec2ade2e71bf87828d1b66691dd526p@chr12:105433069..105433075, -
5.11e-50FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_eeec2ade2e71bf87828d1b66691dd526p@chr12:105433069..105433075, -
1.47e-48FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_0113af01c75bb7ec6216171e7f267502p@chrX:160838787..160838800, +
1.47e-48FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_0113af01c75bb7ec6216171e7f267502p@chrX:160838787..160838800, +
1.58e-44FFCP PHASE1:Hg19::chr10:49813077..49813087,-#_3fe275c562b66674b374329b59c373f6p8@ARHGAP22
1.58e-44FFCP PHASE2:Hg19::chr10:49813077..49813087,-#_3fe275c562b66674b374329b59c373f6p8@ARHGAP22
8.42e-44FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_7063389f82a654650455090e6252f9c6p@chr11:81849982..81850000, +
8.42e-44FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_7063389f82a654650455090e6252f9c6p@chr11:81849982..81850000, +
9.2e-41FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_9e0081277ed0a076993cdba432fe41fdp@chr6:53359400..53359406, +
9.2e-41FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_9e0081277ed0a076993cdba432fe41fd+, p@chr6:53359400..53359406
1.15e-40FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_437b799f4ffdc9391163fea9d439abfap@chr17:14813242..14813246, -
1.15e-40FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_437b799f4ffdc9391163fea9d439abfap@chr17:14813242..14813246, -
2.26e-39FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_6d16aef662ab4d338014a240f2f29b43p4@ARHGAP22
2.26e-39FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_6d16aef662ab4d338014a240f2f29b43p4@ARHGAP22
2.88e-39FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_e6f8d89e9f0781739a07eab0a3dd9353p@chr9:35685631..35685657, +
2.88e-39FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_e6f8d89e9f0781739a07eab0a3dd9353p@chr9:35685631..35685657, +
3.7e-39FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_cfa6f451982ada2492634b702baa2c43p4@Gpr39
3.7e-39FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_cfa6f451982ada2492634b702baa2c43p4@Gpr39
3.75e-39FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_a5aa65a78cb01f5224d65443a6c55ab7p@chrX:160823859..160823870, +
3.75e-39FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_a5aa65a78cb01f5224d65443a6c55ab7p@chrX:160840025..160840037, +
3.75e-39FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_a5aa65a78cb01f5224d65443a6c55ab7p@chrX:160840048..160840057, +
3.75e-39FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_a5aa65a78cb01f5224d65443a6c55ab7p@chrX:160823859..160823870, +
3.75e-39FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_a5aa65a78cb01f5224d65443a6c55ab7p@chrX:160840025..160840037, +
3.75e-39FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_a5aa65a78cb01f5224d65443a6c55ab7p@chrX:160840048..160840057, +
1.14e-38FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_2b10ddf171e2229f42cb66e8e991492cp2@SASH1
1.14e-38FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_2b10ddf171e2229f42cb66e8e991492cp2@SASH1
1.34e-36FFCP PHASE1:Hg19::chr10:49813013..49813032,-#_19be24bbfb37db5a40c37a92d3430651p3@ARHGAP22
1.34e-36FFCP PHASE2:Hg19::chr10:49813013..49813032,-#_19be24bbfb37db5a40c37a92d3430651p3@ARHGAP22
1.46e-35FFCP PHASE1:Hg19::chr19:50031567..50031632,+#_c209e63516f4d7ac35580ca0a2db0e15p2@RCN3
1.46e-35FFCP PHASE2:Hg19::chr19:50031567..50031632,+#_c209e63516f4d7ac35580ca0a2db0e15p2@RCN3
3.31e-35FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_87574dec59e2cc6380542cc3912f8fb8p11@Fam198b
3.31e-35FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_87574dec59e2cc6380542cc3912f8fb8p11@Fam198b
3.69e-35FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_7a8740b60df1c1ea19f20464e438d0e5p@chr1:127574253..127574264, +
3.69e-35FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_7a8740b60df1c1ea19f20464e438d0e5p@chr1:127574253..127574264, +
5.09e-35FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_13f820e9adca91b3358ff2936cfa8df6p7@Gpr39
5.09e-35FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_13f820e9adca91b3358ff2936cfa8df6p7@Gpr39
5.98e-35FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_e3cf8cd6ff6e3e0045eb0213dcb6291bp11@Gpr39
5.98e-35FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_e3cf8cd6ff6e3e0045eb0213dcb6291bp11@Gpr39
7.03e-35FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_ed7eba6ef42f160704ba8859eae127cdp@chrX:160839768..160839780, +
7.03e-35FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_ed7eba6ef42f160704ba8859eae127cdp@chrX:160839768..160839780, +
9.95e-35FFCP PHASE1:Hg19::chr9:35685445..35685517,+#_de2c2ef37d2475523e26e2694452445cp@chr9:35685445..35685517, +
9.95e-35FFCP PHASE2:Hg19::chr9:35685445..35685517,+#_de2c2ef37d2475523e26e2694452445cp@chr9:35685445..35685517, +
1.33e-34FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_f212158675bdd6f37c5a49cc135298d0p8@Gpr39
1.33e-34FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_f212158675bdd6f37c5a49cc135298d0p8@Gpr39
1.89e-34FFCP PHASE1:Hg19::chr9:35684475..35684520,+#_285a32d09ed0ffd4233c1a5a379dd1a1p@chr9:35684475..35684520, +
1.89e-34FFCP PHASE2:Hg19::chr9:35684475..35684520,+#_285a32d09ed0ffd4233c1a5a379dd1a1p@chr9:35684475..35684520, +
4.48e-34FFCP PHASE1:Hg19::chr14:94595800..94595811,-#_b38bcd171ed635934aa78713996e4863p3@IFI27L2
4.48e-34FFCP PHASE2:Hg19::chr14:94595800..94595811,-#_b38bcd171ed635934aa78713996e4863p3@IFI27L2
5.0e-34FFCP PHASE1:Hg19::chr7:102553470..102553487,+#_45aa7afb2ad95218a287942a5a53a0c6p2@LRRC17
5.0e-34FFCP PHASE2:Hg19::chr7:102553470..102553487,+#_45aa7afb2ad95218a287942a5a53a0c6p2@LRRC17
2.06e-33FFCP PHASE1:Hg19::chr9:35689148..35689192,+#_2f5aa9eccc5bd356599b8ff3e04f5095p@chr9:35689148..35689192, +
2.06e-33FFCP PHASE2:Hg19::chr9:35689148..35689192,+#_2f5aa9eccc5bd356599b8ff3e04f5095p@chr9:35689148..35689192, +
7.56e-33FFCP PHASE2:Hg19::chr7:102553430..102553456,+#_fd112f375c990ffb1b77990143cc3d27p1@LRRC17
7.56e-33FFCP PHASE1:Hg19::chr7:102553430..102553456,+#_fd112f375c990ffb1b77990143cc3d27p1@LRRC17
1.21e-32FFCP PHASE2:Hg19::chr21:47518695..47518709,+#_27b509b6ea66a6d04638c76e28971486p6@COL6A2
1.21e-32FFCP PHASE1:Hg19::chr21:47518695..47518709,+#_27b509b6ea66a6d04638c76e28971486p6@COL6A2
2.74e-32FFCP PHASE1:Hg19::chr21:47518637..47518688,+#_0e8971388ed5c4caadf3908840948309p2@COL6A2
2.74e-32FFCP PHASE2:Hg19::chr21:47518637..47518688,+#_0e8971388ed5c4caadf3908840948309p2@COL6A2
3.94e-32FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_168b10701836ac8e89f1beac4af9ebbcp@chr7:96658543..96658553, -
3.94e-32FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_168b10701836ac8e89f1beac4af9ebbcp@chr7:96658543..96658553, -
5.83e-32FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_fda9513a3a3b32dd814061165243aa44p@chr4:74703497..74703511, +
5.83e-32FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_fda9513a3a3b32dd814061165243aa44p@chr4:74703497..74703511, +
9.0e-32FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_3fc3287d2407fad22a362541087d518ap@chr2:134548872..134548879, -
9.0e-32FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_3fc3287d2407fad22a362541087d518ap@chr2:134548872..134548879, -
9.7e-32FFCP PHASE1:Hg19::chr9:35685273..35685313,+#_f6aa2bc336913d63bcc248aaf0e48a28p@chr9:35685273..35685313, +
9.7e-32FFCP PHASE2:Hg19::chr9:35685273..35685313,+#_f6aa2bc336913d63bcc248aaf0e48a28p@chr9:35685273..35685313, +
1.33e-31FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_06608a33bc709c41b759c67df0af68e8p@chr7:91081998..91082010, -
1.33e-31FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_06608a33bc709c41b759c67df0af68e8p2@Il6
1.33e-31FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_06608a33bc709c41b759c67df0af68e8p@chr7:91081998..91082010, -
1.33e-31FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_06608a33bc709c41b759c67df0af68e8p2@Il6
1.59e-31FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_3b68ecb192b0ddb3a8d8165339235571p@chr10:67598037..67598049, -
1.59e-31FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_3b68ecb192b0ddb3a8d8165339235571p@chr10:67598037..67598049, -
2.72e-31FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_67508f8d87224cb3982245479c670022p@chr2:65009852..65009866, -
2.72e-31FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_67508f8d87224cb3982245479c670022p@chr2:65009852..65009866, -
2.8e-31FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_3e4f339c847f8837bfb06131db7d32e0p@chr18:52678391..52678395, -
2.8e-31FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_3e4f339c847f8837bfb06131db7d32e0p@chr18:52678391..52678395, -
7.65e-31FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_377909db18315d77f289188f035e5c33p@chr6:91222095..91222107, +
7.65e-31FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_377909db18315d77f289188f035e5c33p@chr6:91222095..91222107, +
9.72e-31FFCP PHASE2:Hg19::chr1:79472477..79472510,-#_92981fa9db3d4dffb752a8db6f3c02ccp2@ELTD1
9.72e-31FFCP PHASE1:Hg19::chr1:79472477..79472510,-#_92981fa9db3d4dffb752a8db6f3c02ccp2@ELTD1
1.01e-30FFCP PHASE2:Hg19::chr7:100773764..100773799,-#_e3e33560648b7334e1c249c4085e5357p@chr7:100773764..100773799, -
1.01e-30FFCP PHASE2:Mm9::chr5:114822634..114822665,-#_70136e9782c7d881c35a934de5bd70a4p9@Kctd10
1.01e-30FFCP PHASE1:Hg19::chr7:100773764..100773799,-#_e3e33560648b7334e1c249c4085e5357p@chr7:100773764..100773799, -
1.01e-30FFCP PHASE1:Mm9::chr5:114822634..114822665,-#_70136e9782c7d881c35a934de5bd70a4p9@Kctd10
1.17e-30FFCP PHASE1:Mm9::chr1:127573773..127573786,+#_756f6959d39ccd0d6cd6d027f1d86cd2p6@Gpr39
1.17e-30FFCP PHASE2:Mm9::chr1:127573773..127573786,+#_756f6959d39ccd0d6cd6d027f1d86cd2p6@Gpr39
1.26e-30FFCP PHASE2:Hg19::chr12:53491743..53491754,+#_5cba162a05b5d663fd9d7f807f683efep1@AK074416
1.26e-30FFCP PHASE1:Hg19::chr12:53491743..53491754,+#_5cba162a05b5d663fd9d7f807f683efep1@AK074416
1.4e-30FFCP PHASE1:Hg19::chr7:93516035..93516056,+#_db1a2406b8fc41a1cf972fdb957bcdf7p1@CU675118
1.4e-30FFCP PHASE2:Hg19::chr7:93516035..93516056,+#_db1a2406b8fc41a1cf972fdb957bcdf7p1@CU675118
1.8e-30FFCP PHASE2:Hg19::chr21:47532318..47532355,+#_90f78c5360de075d359e684026e0073bp8@COL6A2
1.8e-30FFCP PHASE1:Hg19::chr21:47532318..47532355,+#_90f78c5360de075d359e684026e0073bp8@COL6A2
2.01e-30FFCP PHASE1:Hg19::chr2:33359687..33359717,+#_f44f52973d4f4da72e91693a22345383p2@LTBP1
2.01e-30FFCP PHASE2:Hg19::chr2:33359687..33359717,+#_f44f52973d4f4da72e91693a22345383p2@LTBP1
3.87e-30FFCP PHASE2:Hg19::chr21:47542827..47542859,-#_bab63ddb50ea93410f44352b1af183fc-, p@chr21:47542827..47542859
3.87e-30FFCP PHASE1:Hg19::chr21:47542827..47542859,-#_bab63ddb50ea93410f44352b1af183fcp@chr21:47542827..47542859, -