>assembly/ lv1_raw/ >FANTOM_CAT.lv1_raw.CAGE_cluster.bed.gz >FANTOM_CAT.lv1_raw.bed.gz >FANTOM_CAT.lv1_raw.gtf.gz >FANTOM_CAT.lv1_raw.info_table.ID_mapping.tsv.gz >FANTOM_CAT.lv1_raw.info_table.gene.tsv.gz >FANTOM_CAT.lv1_raw.only_divergent_p_lncRNA.bed.gz >FANTOM_CAT.lv1_raw.only_divergent_p_lncRNA.gtf.gz >FANTOM_CAT.lv1_raw.only_e_lncRNA.bed.gz >FANTOM_CAT.lv1_raw.only_e_lncRNA.gtf.gz >FANTOM_CAT.lv1_raw.only_intergenic_p_lncRNA.bed.gz >FANTOM_CAT.lv1_raw.only_intergenic_p_lncRNA.gtf.gz >FANTOM_CAT.lv1_raw.only_lncRNA.bed.gz >FANTOM_CAT.lv1_raw.only_lncRNA.gtf.gz >FANTOM_CAT.lv1_raw.only_mRNA.bed.gz >FANTOM_CAT.lv1_raw.only_mRNA.gtf.gz lv2_permissive/ >FANTOM_CAT.lv2_permissive.CAGE_cluster.bed.gz >FANTOM_CAT.lv2_permissive.bed.gz >FANTOM_CAT.lv2_permissive.gtf.gz >FANTOM_CAT.lv2_permissive.info_table.ID_mapping.tsv.gz >FANTOM_CAT.lv2_permissive.info_table.gene.tsv.gz >FANTOM_CAT.lv2_permissive.only_divergent_p_lncRNA.bed.gz >FANTOM_CAT.lv2_permissive.only_divergent_p_lncRNA.gtf.gz >FANTOM_CAT.lv2_permissive.only_e_lncRNA.bed.gz >FANTOM_CAT.lv2_permissive.only_e_lncRNA.gtf.gz >FANTOM_CAT.lv2_permissive.only_intergenic_p_lncRNA.bed.gz >FANTOM_CAT.lv2_permissive.only_intergenic_p_lncRNA.gtf.gz >FANTOM_CAT.lv2_permissive.only_lncRNA.bed.gz >FANTOM_CAT.lv2_permissive.only_lncRNA.gtf.gz >FANTOM_CAT.lv2_permissive.only_mRNA.bed.gz >FANTOM_CAT.lv2_permissive.only_mRNA.gtf.gz lv3_robust/ >FANTOM_CAT.lv3_robust.CAGE_cluster.bed.gz >FANTOM_CAT.lv3_robust.bed.gz >FANTOM_CAT.lv3_robust.gtf.gz >FANTOM_CAT.lv3_robust.info_table.ID_mapping.tsv.gz >FANTOM_CAT.lv3_robust.info_table.gene.tsv.gz >FANTOM_CAT.lv3_robust.only_divergent_p_lncRNA.bed.gz >FANTOM_CAT.lv3_robust.only_divergent_p_lncRNA.gtf.gz >FANTOM_CAT.lv3_robust.only_e_lncRNA.bed.gz >FANTOM_CAT.lv3_robust.only_e_lncRNA.gtf.gz >FANTOM_CAT.lv3_robust.only_intergenic_p_lncRNA.bed.gz >FANTOM_CAT.lv3_robust.only_intergenic_p_lncRNA.gtf.gz >FANTOM_CAT.lv3_robust.only_lncRNA.bed.gz >FANTOM_CAT.lv3_robust.only_lncRNA.gtf.gz >FANTOM_CAT.lv3_robust.only_mRNA.bed.gz >FANTOM_CAT.lv3_robust.only_mRNA.gtf.gz lv4_stringent/ >FANTOM_CAT.lv4_stringent.CAGE_cluster.bed.gz >FANTOM_CAT.lv4_stringent.bed.gz >FANTOM_CAT.lv4_stringent.gtf.gz >FANTOM_CAT.lv4_stringent.info_table.ID_mapping.tsv.gz >FANTOM_CAT.lv4_stringent.info_table.gene.tsv.gz >FANTOM_CAT.lv4_stringent.only_divergent_p_lncRNA.bed.gz >FANTOM_CAT.lv4_stringent.only_divergent_p_lncRNA.gtf.gz >FANTOM_CAT.lv4_stringent.only_e_lncRNA.bed.gz >FANTOM_CAT.lv4_stringent.only_e_lncRNA.gtf.gz >FANTOM_CAT.lv4_stringent.only_intergenic_p_lncRNA.bed.gz >FANTOM_CAT.lv4_stringent.only_intergenic_p_lncRNA.gtf.gz >FANTOM_CAT.lv4_stringent.only_lncRNA.bed.gz >FANTOM_CAT.lv4_stringent.only_lncRNA.gtf.gz >FANTOM_CAT.lv4_stringent.only_mRNA.bed.gz >FANTOM_CAT.lv4_stringent.only_mRNA.gtf.gz >expression/ expression_atlas/ >FANTOM_CAT.expression_atlas.CAGE_cluster.lv1_raw.count.tsv.gz >FANTOM_CAT.expression_atlas.CAGE_cluster.lv1_raw.rle_cpm.tsv.gz >FANTOM_CAT.expression_atlas.gene.lv1_raw.count.tsv.gz >FANTOM_CAT.expression_atlas.gene.lv1_raw.rle_cpm.tsv.gz >FANTOM_CAT.expression_atlas.gene.lv2_permissive.count.tsv.gz >FANTOM_CAT.expression_atlas.gene.lv2_permissive.rle_cpm.tsv.gz >FANTOM_CAT.expression_atlas.gene.lv3_robust.count.tsv.gz >FANTOM_CAT.expression_atlas.gene.lv3_robust.rle_cpm.tsv.gz >FANTOM_CAT.expression_atlas.gene.lv4_stringent.count.tsv.gz >FANTOM_CAT.expression_atlas.gene.lv4_stringent.rle_cpm.tsv.gz >other_data/ GENCODEv25_overlay/ >FANTOM_CAT.overlay_GENCODEv25.transcript.tsv.gz coding_potential/ >FANTOM_CAT.lv1_raw.coding_potential.ORF.bed.gz >FANTOM_CAT.lv1_raw.coding_potential.ORF.tsv.gz >FANTOM_CAT.lv1_raw.coding_potential.transcript.tsv.gz directionality/ >FANTOM_CAT.CAGE_directionality.CAGE_cluster.tsv.gz exsome_sensitiviy/ >FANTOM_CAT.exsome_sensitiviy.CAGE_cluster.tsv.gz splicing_index/ >FANTOM_CAT.splicing_index.gene.tsv.gz >FANTOM_CAT.splicing_index.transcript.tsv.gz >source_data/ FANTOM5_RNASeq/ >FANTOM_CAT.FANTOM_RNASeq.final.bed.gz >FANTOM_CAT.FANTOM_RNASeq.stage_A.bed.gz >FANTOM_CAT.FANTOM_RNASeq.stage_B.bed.gz >FANTOM_CAT.FANTOM_RNASeq.stage_C.bed.gz >FANTOM_CAT.FANTOM_RNASeq.stage_D.bed.gz source_CAGE_cluster/ >FANTOM_CAT.source_CAGE_cluster.count.tsv.gz >FANTOM_CAT.source_CAGE_cluster.location.bed.gz source_transcript_model/ >FANTOM_CAT.source_transcript_model.ENCODE.info.tsv.gz >FANTOM_CAT.source_transcript_model.ENCODE.transcript.bed.gz >FANTOM_CAT.source_transcript_model.FANTOM_RNASeq.info.tsv.gz >FANTOM_CAT.source_transcript_model.FANTOM_RNASeq.transcript.bed.gz >FANTOM_CAT.source_transcript_model.GENCODEv19.info.tsv.gz >FANTOM_CAT.source_transcript_model.GENCODEv19.transcript.bed.gz >FANTOM_CAT.source_transcript_model.HumanBodyMap.info.tsv.gz >FANTOM_CAT.source_transcript_model.HumanBodyMap.transcript.bed.gz >FANTOM_CAT.source_transcript_model.miTranscriptome.info.tsv.gz >FANTOM_CAT.source_transcript_model.miTranscriptome.transcript.bed.gz