- FANTOM5 Data Summary
Selected data files for FANTOM5 and instructions for bulk download.
A system for extracting subsets of data from selected FANTOM5 data files including phase 1 and 2 expression tables.
A BioMart instance to download user defined subsets of the FANTOM5 promoters.
- Transcribed Enhancer Atlas
A database describing enhancer regions defined by CAGE tags in the FANTOM5 project, with samples over the whole human body.
- FANTOM CAT
An atlas of human long non-coding RNAs with accurate 5’ ends
FANTOM5 Supplemental Data
- Kanamori-Katayama et al. 2011
An automated workflow to sequence CAGE libraries.
- Motakis et al. 2013
Redefinition of the human mast cell transcriptome by deep sequencing
- Kawaji et al. 2013
Comparison of CAGE and RNA-seq transcriptome profiling using a clonally amplified and single molecule next generation sequencing
- Verardo et al. 2014
Heterogeneity of mesenchymal stem cells and signatures in ovarian cancer
- Ohmiya et al. 2014
RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation
- Lizio et al. 2015
Cell type-specific regulatory networks in TC-YIK cervical cancer cell line
- Ramilowski el al. 2015
A draft network of ligand-receptor mediated multicellular signaling in human
- Dieterich et al. 2015
Role of human MAFB in lymphatic endothelium
An atlas of miRNAs
- Klein et al. 2015
Lymphatic endothelial response to VEGF-C is regulated by HOXD10 transcription factor
An atlas of lncRNAs with accurate 5' ends
- Abugessaisa et al. 2016
The FANTOM5 SSTAR sample database
- Lizio et al 2017
Systematic analysis of TSSs in avian development