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UBERON:0000981

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Name:femur
Namespace:FANTOM
Definition:"The femur, or thigh bone, is the most proximal (closest to the body) bone of the leg in vertebrates capable of walking or jumping, such as most land mammals, birds, many reptiles such as lizards, and amphibians such as frogs. In vertebrates with four legs, the femur is found only in the rear legs. Some species of whales[1], snakes[2], and other non-walking vertebrates have vestigial femurs. One of the earliest known vertebrates to have a femur is the Eusthenopteron, a prehistoric lobe-finned fish from the Late Devonian period." [Wikipedia:Femur]
Xrefs:
links:

AAO:0000889
BTO:0001284
EFO:0001396
EMAPA:18514
EMAPA:19143
FMA:9611
GAID:199
galen:Femur
[ Gray252.png Gray252.png]
[ 200px-Gray252.png 200px-Gray252.png]
MA:0001359
MESH:A.02.835.232.500.247
ncithesaurus:Femur
OpenCyc:Mx4rvVjOJJwpEbGdrcN5Y29ycA
SCTID:182046008
VHOG:0001159
VSAO:0000186

XAO:0003214
Synonyms: "femoral bone" RELATED [BTO:0001284]
"os femorale" RELATED [BTO:0001284]
"os femoris" RELATED [BTO:0001284]
"os femoris, os longissimum" RELATED LATIN [Wikipedia:Femur]
"thigh bone" EXACT []
Comments:homologous to proximal metapterygial mesomere [Hall 2007].
Alt_id: UBERON:FBbt_00004644-FMA_9611-MA_0001359
Subset: uberon_slim

Ontology association

Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.



link to ontology dataset


data

Parents

is_a:UBERON:0003608(hindlimb long bone),UBERON:0003826(upper leg bone),UBERON:0008202(bone of hip region),UBERON:0015052(femur endochondral element)
develops_from:UBERON:0010129(femur cartilage element)
part_of:UBERON:0000376(hindlimb stylopod),UBERON:0001441(hindlimb skeleton)



Children

derives from:FF:0011462 (mouse bone- os femoris - neonate N16 sample)FF:0011463 (mouse bone- os femoris - neonate N2 sample)FF:0011464 (mouse bone- os femoris - adult sample)FF:0011467 (mouse bone- os femoris - neonate N20 sample)

Ontology Tree: Loaded from BioPortal


FF samples

It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term
TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000981 (femur), sorted by p-values
Analyst: Hideya Kawaji



link to source dataset
human : data

mouse : data

P-valueFFCPShort description
3.4e-49FFCP_PHASE2:Mm9::chr11:77624716..77624729,+#_6ac31d6946c421accfd0562306034bc3p26@Myo18a
3.4e-49FFCP_PHASE1:Mm9::chr11:77624716..77624729,+#_6ac31d6946c421accfd0562306034bc3p26@Myo18a
4.96e-49FFCP_PHASE1:Mm9::chr8:75097542..75097549,+#_9375c8bd7d58833c1a99da7c9fdee12cp@chr8:75097542..75097549, +
4.96e-49FFCP_PHASE1:Mm9::chr2:32482372..32482381,+#_9375c8bd7d58833c1a99da7c9fdee12cp@chr2:32482372..32482381, +
4.96e-49FFCP_PHASE2:Mm9::chr2:32482372..32482381,+#_9375c8bd7d58833c1a99da7c9fdee12cp@chr2:32482372..32482381, +
4.96e-49FFCP_PHASE2:Mm9::chr8:75097542..75097549,+#_9375c8bd7d58833c1a99da7c9fdee12cp@chr8:75097542..75097549, +
4.96e-49FFCP_PHASE1:Mm9::chr9:21934585..21934591,-#_9375c8bd7d58833c1a99da7c9fdee12cp@chr9:21934585..21934591, -
4.96e-49FFCP_PHASE2:Mm9::chr9:21934585..21934591,-#_9375c8bd7d58833c1a99da7c9fdee12cp@chr9:21934585..21934591, -
3.15e-44FFCP_PHASE2:Mm9::chr6:51525810..51525817,+#_6d7809c25378bb295701ea4d2b23cb3cp@chr6:51525810..51525817, +
3.15e-44FFCP_PHASE1:Mm9::chr6:51525810..51525817,+#_6d7809c25378bb295701ea4d2b23cb3cp@chr6:51525810..51525817, +
9.78e-40FFCP_PHASE1:Mm9::chr19:4876870..4876880,-#_6fcbc1695446e20e36b01318d4261d1ep@chr19:4876870..4876880, -
9.78e-40FFCP_PHASE2:Mm9::chr19:4876870..4876880,-#_6fcbc1695446e20e36b01318d4261d1ep@chr19:4876870..4876880, -
1.15e-39FFCP_PHASE1:Mm9::chr16:24096441..24096449,+#_a5d807d8733e2f8badc6454b621077ecp@chr16:24096441..24096449, +
1.15e-39FFCP_PHASE2:Mm9::chr6:4490674..4490679,+#_a5d807d8733e2f8badc6454b621077ec+, p@chr6:4490674..4490679
1.15e-39FFCP_PHASE2:Mm9::chr1:174140324..174140335,-#_a5d807d8733e2f8badc6454b621077ecp@chr1:174140324..174140335, -
1.15e-39FFCP_PHASE1:Mm9::chr11:67063327..67063335,+#_a5d807d8733e2f8badc6454b621077ecp@chr11:67063327..67063335, +
1.15e-39FFCP_PHASE1:Mm9::chr1:174140324..174140335,-#_a5d807d8733e2f8badc6454b621077ecp@chr1:174140324..174140335, -
1.15e-39FFCP_PHASE1:Mm9::chr6:4490674..4490679,+#_a5d807d8733e2f8badc6454b621077ecp@chr6:4490674..4490679, +
1.15e-39FFCP_PHASE2:Mm9::chr11:67063327..67063335,+#_a5d807d8733e2f8badc6454b621077ecp@chr11:67063327..67063335, +
1.15e-39FFCP_PHASE2:Mm9::chr16:24096441..24096449,+#_a5d807d8733e2f8badc6454b621077ecp@chr16:24096441..24096449, +
1.55e-39FFCP_PHASE2:Mm9::chr1:174143249..174143260,-#_82ce2ac21a3ed20589eae8aee1e9078ep@chr1:174143249..174143260, -
1.55e-39FFCP_PHASE1:Mm9::chr1:174143249..174143260,-#_82ce2ac21a3ed20589eae8aee1e9078ep@chr1:174143249..174143260, -
3.03e-39FFCP_PHASE2:Mm9::chr6:51525869..51525891,+#_4c1f34f08e73622d4c34d4b0260f9300p@chr6:51525869..51525891, +
3.03e-39FFCP_PHASE1:Mm9::chr6:51525869..51525891,+#_4c1f34f08e73622d4c34d4b0260f9300p@chr6:51525869..51525891, +
9.31e-39FFCP_PHASE1:Mm9::chr11:102130083..102130092,+#_6d9145e7ce1715b3f693c0658a9006f5p3@Asb16
9.31e-39FFCP_PHASE2:Mm9::chr11:102130083..102130092,+#_6d9145e7ce1715b3f693c0658a9006f5p3@Asb16
2.41e-35FFCP_PHASE2:Mm9::chr7:133604286..133604297,-#_3a7342f03c184f03655cb216b4cbad06p@chr7:133604286..133604297, -
2.41e-35FFCP_PHASE1:Mm9::chr7:133604286..133604297,-#_3a7342f03c184f03655cb216b4cbad06p@chr7:133604286..133604297, -
2.95e-35FFCP_PHASE2:Mm9::chr4:138365748..138365759,-#_44b6e3dbe9a2b4b36bd952f1a01ad1e7p5@Pla2g5
2.95e-35FFCP_PHASE1:Mm9::chr4:138365748..138365759,-#_44b6e3dbe9a2b4b36bd952f1a01ad1e7p5@Pla2g5
9.53e-34FFCP_PHASE1:Mm9::chr8:74049600..74049612,-#_fa7062e14773e55f2936816174c0c489p2@uc009mdq.1
9.53e-34FFCP_PHASE2:Mm9::chr8:74049600..74049612,-#_fa7062e14773e55f2936816174c0c489p2@uc009mdq.1
1.23e-33FFCP_PHASE2:Mm9::chr2:164773241..164773248,+#_08b5521573ccbe693548c121a07e3a5ep3@Mmp9
1.23e-33FFCP_PHASE1:Mm9::chr2:164773241..164773248,+#_08b5521573ccbe693548c121a07e3a5ep3@Mmp9
1.58e-33FFCP_PHASE2:Mm9::chr1:166815111..166815121,-#_ad3d7c74651f9cb260bd7c329e07c6b6p@chr1:166815111..166815121, -
1.58e-33FFCP_PHASE1:Mm9::chr7:3567707..3567718,-#_ad3d7c74651f9cb260bd7c329e07c6b6p2@Oscar
1.58e-33FFCP_PHASE2:Mm9::chr7:3567707..3567718,-#_ad3d7c74651f9cb260bd7c329e07c6b6p2@Oscar
1.58e-33FFCP_PHASE1:Mm9::chr1:166815111..166815121,-#_ad3d7c74651f9cb260bd7c329e07c6b6p@chr1:166815111..166815121, -
2.04e-33FFCP_PHASE1:Mm9::chr9:70799951..70799962,-#_97032a94cb7083218af512091980205dp4@Lipc
2.04e-33FFCP_PHASE2:Mm9::chr11:75409652..75409664,+#_97032a94cb7083218af512091980205dp@chr11:75409652..75409664, +
2.04e-33FFCP_PHASE2:Mm9::chr9:70799951..70799962,-#_97032a94cb7083218af512091980205dp4@Lipc
2.04e-33FFCP_PHASE1:Mm9::chr11:75409652..75409664,+#_97032a94cb7083218af512091980205d+, p@chr11:75409652..75409664
3.38e-33FFCP_PHASE1:Mm9::chr15:102196702..102196713,-#_b0c1ad921d6688281d3bcb853acad0bap6@Sp7
3.38e-33FFCP_PHASE2:Mm9::chr15:102196702..102196713,-#_b0c1ad921d6688281d3bcb853acad0bap6@Sp7
7.17e-33FFCP_PHASE2:Mm9::chr8:126415826..126415839,+#_d79d2ea46e27a70f1b1425053cc563bep@chr8:126415826..126415839, +
7.17e-33FFCP_PHASE1:Mm9::chr18:76271498..76271508,+#_d79d2ea46e27a70f1b1425053cc563be+, p@chr18:76271498..76271508
7.17e-33FFCP_PHASE1:Mm9::chr8:126415826..126415839,+#_d79d2ea46e27a70f1b1425053cc563bep@chr8:126415826..126415839, +
7.17e-33FFCP_PHASE2:Mm9::chr18:76271498..76271508,+#_d79d2ea46e27a70f1b1425053cc563bep@chr18:76271498..76271508, +
2.67e-30FFCP_PHASE1:Mm9::chr2:32482387..32482399,+#_b253433be0108db102f469984b90347cp@chr2:32482387..32482399, +
2.67e-30FFCP_PHASE2:Mm9::chr2:32482387..32482399,+#_b253433be0108db102f469984b90347cp@chr2:32482387..32482399, +
1.1e-29FFCP_PHASE1:Mm9::chr12:70396969..70396979,+#_ed77989eb67dad88f736c95c7f38d2d2p@chr12:70396969..70396979, +
1.1e-29FFCP_PHASE2:Mm9::chr12:70396969..70396979,+#_ed77989eb67dad88f736c95c7f38d2d2p@chr12:70396969..70396979, +
1.1e-29FFCP_PHASE1:Mm9::chr15:58649683..58649688,-#_ed77989eb67dad88f736c95c7f38d2d2p@chr15:58649683..58649688, -
1.1e-29FFCP_PHASE2:Mm9::chr15:58649683..58649688,-#_ed77989eb67dad88f736c95c7f38d2d2p@chr15:58649683..58649688, -
1.46e-29FFCP_PHASE1:Mm9::chr7:133590998..133591009,-#_11227fa48155dd5623764d90c5c25b38p@chr7:133590998..133591009, -
1.46e-29FFCP_PHASE2:Mm9::chr7:133590998..133591009,-#_11227fa48155dd5623764d90c5c25b38p@chr7:133590998..133591009, -
1.73e-29FFCP_PHASE1:Mm9::chr18:60751417..60751432,-#_27f11e159d835dc6ce6dbc22792aad39p2@Myoz3
1.73e-29FFCP_PHASE2:Mm9::chr18:60751417..60751432,-#_27f11e159d835dc6ce6dbc22792aad39p2@Myoz3
2.42e-29FFCP_PHASE1:Mm9::chr11:67051354..67051366,+#_15efc64329dd7b6e80b898743ddeffd3p2@Myh4
2.42e-29FFCP_PHASE2:Mm9::chr11:67051354..67051366,+#_15efc64329dd7b6e80b898743ddeffd3p2@Myh4
7.46e-29FFCP_PHASE2:Mm9::chr1:57155729..57155740,-#_3bebb7e2779cdc27672cc532c45c181c-, p@chr1:57155729..57155740
7.46e-29FFCP_PHASE1:Mm9::chr1:57155729..57155740,-#_3bebb7e2779cdc27672cc532c45c181cp@chr1:57155729..57155740, -
9.26e-29FFCP_PHASE2:Mm9::chr4:43597258..43597265,-#_5af86bea4954e52018f2f9802e24dbe4p1@Msmp
9.26e-29FFCP_PHASE1:Mm9::chr4:43597258..43597265,-#_5af86bea4954e52018f2f9802e24dbe4p1@Msmp
9.26e-29FFCP_PHASE2:Mm9::chr11:67056544..67056589,-#_5af86bea4954e52018f2f9802e24dbe4-, p@chr11:67056544..67056589
9.26e-29FFCP_PHASE1:Mm9::chr11:67056544..67056589,-#_5af86bea4954e52018f2f9802e24dbe4-, p@chr11:67056544..67056589
1.15e-28FFCP_PHASE1:Mm9::chrY:2858251..2858257,+#_f28cc19ca6a1e62daf953a4d5dd70877p@chrY:2858251..2858257, +
1.15e-28FFCP_PHASE1:Mm9::chr6:90552017..90552024,+#_f28cc19ca6a1e62daf953a4d5dd70877p@chr6:90552017..90552024, +
1.15e-28FFCP_PHASE2:Mm9::chr6:90552017..90552024,+#_f28cc19ca6a1e62daf953a4d5dd70877p@chr6:90552017..90552024, +
1.15e-28FFCP_PHASE2:Mm9::chrY:2858251..2858257,+#_f28cc19ca6a1e62daf953a4d5dd70877p@chrY:2858251..2858257, +
1.43e-28FFCP_PHASE1:Mm9::chr6:34436258..34436292,+#_dab350db5b74f17f1054a6278430174dp@chr6:34436258..34436292, +
1.43e-28FFCP_PHASE2:Mm9::chr6:34436258..34436292,+#_dab350db5b74f17f1054a6278430174dp@chr6:34436258..34436292, +
2.2e-28FFCP_PHASE2:Mm9::chr11:67069796..67069817,-#_9c3e0fcb5f8cb5cfdc5ef9cde561a426p@chr11:67069796..67069817, -
2.2e-28FFCP_PHASE1:Mm9::chr11:67069796..67069817,-#_9c3e0fcb5f8cb5cfdc5ef9cde561a426p@chr11:67069796..67069817, -
2.72e-28FFCP_PHASE2:Mm9::chr8:107702369..107702386,+#_da41467e3cc2aa8869d9d9f4dc1f9815p@chr8:107702369..107702386, +
2.72e-28FFCP_PHASE1:Mm9::chr8:107702369..107702386,+#_da41467e3cc2aa8869d9d9f4dc1f9815p@chr8:107702369..107702386, +
3.45e-28FFCP_PHASE1:Mm9::chr18:78254135..78254146,-#_1a8aa412732d3268ee666ee14c7cada1p1@Siglec15
3.45e-28FFCP_PHASE2:Mm9::chr18:78254135..78254146,-#_1a8aa412732d3268ee666ee14c7cada1p1@Siglec15
6.5e-28FFCP_PHASE1:Mm9::chr7:133591490..133591500,-#_4d4c970f6201cb9cade857eae3f8b4cfp6@Atp2a1
6.5e-28FFCP_PHASE2:Mm9::chr7:133591490..133591500,-#_4d4c970f6201cb9cade857eae3f8b4cfp6@Atp2a1
8.9e-28FFCP_PHASE1:Mm9::chr7:133591156..133591165,-#_e5f711b727ab838ca4ad042f254b7479p7@Atp2a1
8.9e-28FFCP_PHASE2:Mm9::chr7:133591156..133591165,-#_e5f711b727ab838ca4ad042f254b7479p7@Atp2a1
1.42e-27FFCP_PHASE1:Mm9::chr7:133592162..133592188,-#_d0411d7a7804860928ff2f3f43d96eacp@chr7:133592162..133592188, -
1.42e-27FFCP_PHASE2:Mm9::chr7:133600635..133600663,+#_d0411d7a7804860928ff2f3f43d96eacp@chr7:133600635..133600663, +
1.42e-27FFCP_PHASE2:Mm9::chr7:133592162..133592188,-#_d0411d7a7804860928ff2f3f43d96eacp@chr7:133592162..133592188, -
1.42e-27FFCP_PHASE1:Mm9::chr7:133600635..133600663,+#_d0411d7a7804860928ff2f3f43d96eacp@chr7:133600635..133600663, +
6.75e-27FFCP_PHASE2:Mm9::chr11:94837662..94837673,-#_696a7e38072b51d586276af2f3c7a42bp4@Sgca
6.75e-27FFCP_PHASE1:Mm9::chr11:94837662..94837673,-#_696a7e38072b51d586276af2f3c7a42bp4@Sgca
1.66e-26FFCP_PHASE1:Mm9::chr5:104754379..104754387,+#_2a81888f46ac23679f3b6766c920c7d1p1@Mepe
1.66e-26FFCP_PHASE2:Mm9::chr5:104754379..104754387,+#_2a81888f46ac23679f3b6766c920c7d1p1@Mepe
3.47e-26FFCP_PHASE2:Mm9::chr12:81581216..81581231,+#_0d0c71a61da0348b9c543e0d8d8183e5p@chr12:81581216..81581231, +
3.47e-26FFCP_PHASE1:Mm9::chr16:32400888..32400899,+#_0d0c71a61da0348b9c543e0d8d8183e5p2@Tm4sf19
3.47e-26FFCP_PHASE1:Mm9::chr12:81581216..81581231,+#_0d0c71a61da0348b9c543e0d8d8183e5p@chr12:81581216..81581231, +
3.47e-26FFCP_PHASE2:Mm9::chr16:32400888..32400899,+#_0d0c71a61da0348b9c543e0d8d8183e5p2@Tm4sf19
1.12e-25FFCP_PHASE2:Mm9::chr17:34176173..34176200,+#_5c7a7e55ddcd4d35b16146ed08cb07f6p5@Col11a2
1.12e-25FFCP_PHASE1:Mm9::chr17:34176173..34176200,+#_5c7a7e55ddcd4d35b16146ed08cb07f6p5@Col11a2
1.12e-25FFCP_PHASE2:Mm9::chr15:97806574..97806585,-#_5c7a7e55ddcd4d35b16146ed08cb07f6p@chr15:97806574..97806585, -
1.12e-25FFCP_PHASE1:Mm9::chr15:97806574..97806585,-#_5c7a7e55ddcd4d35b16146ed08cb07f6p@chr15:97806574..97806585, -
1.36e-25FFCP_PHASE1:Mm9::chr18:78254174..78254185,-#_e54a05906d2de3631a7a89d1c3eb51e1p2@Siglec15
1.36e-25FFCP_PHASE2:Mm9::chr18:78254174..78254185,-#_e54a05906d2de3631a7a89d1c3eb51e1p2@Siglec15










"UBPROP:0000001 "Endochondral longbone connecting the pelvic girdle with posterior zeugopodium.[VSAO]" xsd:string" cannot be used as a page name in this wiki.
,
"UBPROP:0000001 "Paired, elongate, cylindrical bones of endochondral origin that form the thighs, extending from the pelvic girdles to the knees.[AAO]" xsd:string" cannot be used as a page name in this wiki.