| Code | Method |
| MGI | FANTOM clone -> MGI gene;
assigned by curation at FANTOM
MGI -> GO; assigned by MGI staff |
| EGD | FANTOM -> EGAD; BLAST of
FANTOM to TIGR:HGI for FANTOM
EGAD -> GO; translation table of EGAD terms to GO terms |
| SP1 | FANTOM -> SPTR# AC_id;
assigned by curation at FANTOM
SPTR AC_id -> SPTR Keywords; SwissProt annotation SPTR keywords -> GO; translation table of SwissProt keywords to GO terms |
| SP2 | FANTOM -> SPTR AC_id; assigned
by fasta algorithm
SPTR AC_id -> SPTR Keywords; SwissProt annotation SPTR keywords -> GO; translation table of SwissProt keywords to GO terms |
| IP1 | FANTOM -> InterPro; assigned
by curation at FANTOM
InterPro -> GO; assigned by EBI staff |
| IP2 | FANTOM -> InterPro; assigned
by InterProScan algorithm
InterPro -> GO; assigned by EBI staff |
| PFM | FANTOM -> PFAM; assigned
by curation at FANTOM
PFAM -> InterPro; by inclusion of PFAM in InterPro InterPro -> GO; assigned by EBI staff |
| EC | FANTOM -> SwissProt; by
fasta algorithm
SwissProt -> assigned by SwissProt annotators EC -> GO; using EC<->GO links in GO |
| EXP | FANTOM -> GO; assigned by curation at FANTOM |
| # SPTR is a non-redundant protein database that combines SwissProt with weekly updated translation of protein coding sequences of TrEMBL |