Mus musculusEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus; Mus musculus see the pairs of domain combinations.Go to the Taxonomy browser for this genome. Information on the source of the genome -->here<--. Download the fasta format peptide file. Back to summary of ALL genomes
|
3384 domains in 651 proteins in SCOP superfamily C2H2 and C2HC zinc fingers 2150 domains in 1015 proteins in SCOP superfamily Immunoglobulin 1514 domains in 1256 proteins in SCOP superfamily P-loop containing nucleotide triphosphate hydrolases 1414 domains in 304 proteins in SCOP superfamily EGF/Laminin 1206 domains in 176 proteins in SCOP superfamily Cadherin 903 domains in 878 proteins in SCOP superfamily Membrane all-alpha 883 domains in 864 proteins in SCOP superfamily Protein kinase-like (PK-like) 856 domains in 286 proteins in SCOP superfamily Fibronectin type III 749 domains in 437 proteins in SCOP superfamily RNA-binding domain, RBD 544 domains in 475 proteins in SCOP superfamily PH domain-like 508 domains in 419 proteins in SCOP superfamily Homeodomain-like 470 domains in 402 proteins in SCOP superfamily EF-hand 436 domains in 429 proteins in SCOP superfamily ARM repeat 435 domains in 418 proteins in SCOP superfamily RING finger domain, C3HC4 387 domains in 300 proteins in SCOP superfamily SH3-domain 376 domains in 374 proteins in SCOP superfamily Trp-Asp repeat (WD-repeat) 360 domains in 304 proteins in SCOP superfamily Ankyrin repeat 355 domains in 45 proteins in SCOP superfamily Spectrin repeat 332 domains in 192 proteins in SCOP superfamily PDZ domain-like 327 domains in 145 proteins in SCOP superfamily Glucocorticoid receptor-like (DNA-binding domain) 314 domains in 71 proteins in SCOP superfamily Complement control module/SCR domain 310 domains in 281 proteins in SCOP superfamily TPR-like 284 domains in 190 proteins in SCOP superfamily C2 domain (Calcium/lipid-binding domain, CaLB) 280 domains in 278 proteins in SCOP superfamily NAD(P)-binding Rossmann-fold domains 279 domains in 219 proteins in SCOP superfamily Thioredoxin-like 265 domains in 245 proteins in SCOP superfamily "Winged helix" DNA-binding domain 259 domains in 202 proteins in SCOP superfamily C-type lectin-like 251 domains in 222 proteins in SCOP superfamily Ubiquitin-like 248 domains in 245 proteins in SCOP superfamily RNI-like 241 domains in 126 proteins in SCOP superfamily Actin-like ATPase domain 240 domains in 224 proteins in SCOP superfamily POZ domain 239 domains in 238 proteins in SCOP superfamily alpha/beta-Hydrolases 221 domains in 54 proteins in SCOP superfamily LDL receptor-like module 208 domains in 208 proteins in SCOP superfamily Helix-loop-helix DNA-binding domain 203 domains in 184 proteins in SCOP superfamily FYVE/PHD zinc finger 202 domains in 201 proteins in SCOP superfamily Trypsin-like serine proteases 198 domains in 194 proteins in SCOP superfamily S-adenosyl-L-methionine-dependent methyltransferases 195 domains in 180 proteins in SCOP superfamily SH2 domain 182 domains in 78 proteins in SCOP superfamily Eukaryotic type KH-domain (eKH-domain) 164 domains in 126 proteins in SCOP superfamily Integrin A (or I) domain 161 domains in 151 proteins in SCOP superfamily L domain-like 155 domains in 154 proteins in SCOP superfamily Metalloproteases ("zincins"), catalytic domain 151 domains in 113 proteins in SCOP superfamily Concanavalin A-like lectins/glucanases 150 domains in 64 proteins in SCOP superfamily Spermadhesin, CUB domain 147 domains in 130 proteins in SCOP superfamily (Phosphotyrosine protein) phosphatases II 146 domains in 102 proteins in SCOP superfamily Calponin-homology domain, CH-domain 141 domains in 44 proteins in SCOP superfamily Actin depolymerizing proteins 130 domains in 117 proteins in SCOP superfamily SAM/Pointed domain 129 domains in 128 proteins in SCOP superfamily Nucleotide-diphospho-sugar transferases 122 domains in 122 proteins in SCOP superfamily Cysteine proteinases 120 domains in 93 proteins in SCOP superfamily HMG-box 120 domains in 104 proteins in SCOP superfamily Galactose-binding domain-like 116 domains in 63 proteins in SCOP superfamily WW domain 113 domains in 41 proteins in SCOP superfamily Scavenger receptor cysteine-rich (SRCR) domain 113 domains in 68 proteins in SCOP superfamily Cyclin-like 109 domains in 63 proteins in SCOP superfamily BRCT domain 109 domains in 109 proteins in SCOP superfamily Cytochrome P450 103 domains in 103 proteins in SCOP superfamily 4-helical cytokines 103 domains in 58 proteins in SCOP superfamily Ypt/Rab-GAP domain of gyp1p 103 domains in 102 proteins in SCOP superfamily GTPase activation domain, GAP 102 domains in 102 proteins in SCOP superfamily Nuclear receptor ligand-binding domain 102 domains in 72 proteins in SCOP superfamily Cysteine-rich domain 100 domains in 47 proteins in SCOP superfamily Integrin domains 97 domains in 89 proteins in SCOP superfamily DEATH domain 95 domains in 85 proteins in SCOP superfamily Nucleic acid-binding proteins 94 domains in 94 proteins in SCOP superfamily FAD/NAD(P)-binding domain 91 domains in 91 proteins in SCOP superfamily p53-like transcription factors 91 domains in 57 proteins in SCOP superfamily TNF receptor-like 90 domains in 49 proteins in SCOP superfamily Kringle-like 90 domains in 85 proteins in SCOP superfamily Quinoprotein alcohol dehydrogenase 89 domains in 89 proteins in SCOP superfamily Galactose oxidase, central domain 88 domains in 88 proteins in SCOP superfamily MHC antigen-recognition domain 87 domains in 87 proteins in SCOP superfamily Serpins 87 domains in 87 proteins in SCOP superfamily Glutathione S-transferases, C-terminal domain 85 domains in 83 proteins in SCOP superfamily PLP-dependent transferases 84 domains in 82 proteins in SCOP superfamily (Trans)glycosidases 83 domains in 83 proteins in SCOP superfamily Cystine-knot cytokines 82 domains in 82 proteins in SCOP superfamily Periplasmic binding protein-like I 81 domains in 45 proteins in SCOP superfamily dsRNA-binding domain-like 81 domains in 80 proteins in SCOP superfamily Histone-fold 81 domains in 81 proteins in SCOP superfamily Skp1-Skp2 dimerisation domains 79 domains in 79 proteins in SCOP superfamily DBL homology domain 79 domains in 60 proteins in SCOP superfamily PYP-like sensor domain 78 domains in 78 proteins in SCOP superfamily Nicotinic receptor ligand binding domain-like 78 domains in 78 proteins in SCOP superfamily Ubiquitin conjugating enzyme 76 domains in 76 proteins in SCOP superfamily Chaperone J-domain 76 domains in 65 proteins in SCOP superfamily Ovomucoid/PCI-1 like inhibitors 75 domains in 75 proteins in SCOP superfamily Second domain of FERM 74 domains in 70 proteins in SCOP superfamily Snake toxin-like 71 domains in 35 proteins in SCOP superfamily Thyroglobulin type-1 domain 71 domains in 69 proteins in SCOP superfamily Zn-dependent exopeptidases 70 domains in 68 proteins in SCOP superfamily Protein prenylyltransferase 68 domains in 49 proteins in SCOP superfamily Vitelline membrane outer protein-I (VMO-I) 67 domains in 40 proteins in SCOP superfamily Retrovirus zinc finger-like domains 65 domains in 65 proteins in SCOP superfamily N-terminal nucleophile aminohydrolases (Ntn hydrolases) 65 domains in 59 proteins in SCOP superfamily Tudor/PWWP 63 domains in 63 proteins in SCOP superfamily PX domain 63 domains in 62 proteins in SCOP superfamily TNF-like 61 domains in 58 proteins in SCOP superfamily Regulator of G-protein signalling, RGS 59 domains in 53 proteins in SCOP superfamily Ribonuclease H-like 58 domains in 58 proteins in SCOP superfamily Lipocalins 57 domains in 55 proteins in SCOP superfamily Acyl-CoA N-acyltransferases (Nat) 57 domains in 57 proteins in SCOP superfamily DNase I-like 57 domains in 56 proteins in SCOP superfamily HAD-like 57 domains in 57 proteins in SCOP superfamily Cytokine 55 domains in 29 proteins in SCOP superfamily Thiolase-like 53 domains in 51 proteins in SCOP superfamily Hemopexin-like domain 53 domains in 52 proteins in SCOP superfamily Nucleotidylyl transferase 53 domains in 53 proteins in SCOP superfamily SMAD/FHA domain 52 domains in 36 proteins in SCOP superfamily cAMP-binding domain-like 52 domains in 50 proteins in SCOP superfamily Translation proteins 51 domains in 50 proteins in SCOP superfamily Ribosomal protein S5 domain 2-like 51 domains in 37 proteins in SCOP superfamily TRAF domain-like 51 domains in 46 proteins in SCOP superfamily Periplasmic binding protein-like II 49 domains in 28 proteins in SCOP superfamily Bactericidal permeability-increasing protein, BPI 49 domains in 49 proteins in SCOP superfamily B-box zinc-binding domain 49 domains in 49 proteins in SCOP superfamily Interleukin 8-like chemokines 49 domains in 47 proteins in SCOP superfamily Firefly luciferase-like 49 domains in 49 proteins in SCOP superfamily NAD(P)-linked oxidoreductase 48 domains in 13 proteins in SCOP superfamily Serine proterase inhibitors 47 domains in 26 proteins in SCOP superfamily CBS-domain 47 domains in 45 proteins in SCOP superfamily Glutathione synthetase ATP-binding domain-like 47 domains in 47 proteins in SCOP superfamily Metallo-dependent phosphatases 46 domains in 46 proteins in SCOP superfamily Binding domain of Skn-1 46 domains in 46 proteins in SCOP superfamily Blood coagulation inhibitor (disintegrin) 46 domains in 46 proteins in SCOP superfamily Alkaline phosphatase-like 46 domains in 39 proteins in SCOP superfamily Lipase/lipooxygenase domain (PLAT/LH2 domain) 45 domains in 45 proteins in SCOP superfamily Class II aaRS and biotin synthetases 45 domains in 33 proteins in SCOP superfamily Chromo domain-like 45 domains in 45 proteins in SCOP superfamily Ras GEF 44 domains in 35 proteins in SCOP superfamily Cystatin/monellin 44 domains in 44 proteins in SCOP superfamily Nudix 44 domains in 44 proteins in SCOP superfamily HSP20-like chaperones 44 domains in 10 proteins in SCOP superfamily Metal-binding domain 43 domains in 43 proteins in SCOP superfamily Globin-like 43 domains in 43 proteins in SCOP superfamily Ubiquitin-protein ligase E3a, Hect catalytic domain (E6ap) 43 domains in 9 proteins in SCOP superfamily TB module/8-cys domain 42 domains in 42 proteins in SCOP superfamily Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b 41 domains in 41 proteins in SCOP superfamily Fibrinogen C-terminal domain-like 41 domains in 41 proteins in SCOP superfamily Integrin alpha N-terminal domain 41 domains in 32 proteins in SCOP superfamily Bromodomain 40 domains in 18 proteins in SCOP superfamily Inhibitor of apoptosis (IAP) repeat 40 domains in 37 proteins in SCOP superfamily Nucleotidyltransferases 39 domains in 12 proteins in SCOP superfamily Cupredoxins 39 domains in 35 proteins in SCOP superfamily ClpP/crotonase 39 domains in 39 proteins in SCOP superfamily lambda repressor-like DNA-binding domains 39 domains in 30 proteins in SCOP superfamily Phospholipase A2, PLA2 38 domains in 11 proteins in SCOP superfamily Phosphoglucomutase, first 3 domains 38 domains in 36 proteins in SCOP superfamily ALDH-like 37 domains in 37 proteins in SCOP superfamily Ricin B-like lectins 37 domains in 37 proteins in SCOP superfamily Riboflavin synthase domain-like 37 domains in 37 proteins in SCOP superfamily GroES-like 37 domains in 9 proteins in SCOP superfamily alpha-catenin/vinculin 37 domains in 37 proteins in SCOP superfamily Ferredoxin reductase-like, C-terminal NADP-linked domain 36 domains in 36 proteins in SCOP superfamily UDP-Glycosyltransferase/glycogen phosphorylase 36 domains in 34 proteins in SCOP superfamily RCC1/BLIP-II 36 domains in 36 proteins in SCOP superfamily C-terminal domain of phosphatidylinositol transfer protein sec14p 36 domains in 29 proteins in SCOP superfamily FKBP-like 36 domains in 19 proteins in SCOP superfamily LuxS/MPP-like metallohydrolase 35 domains in 9 proteins in SCOP superfamily Fibronectin type I module 35 domains in 35 proteins in SCOP superfamily Acid proteases 35 domains in 35 proteins in SCOP superfamily Acyl-CoA dehydrogenase (flavoprotein), N-terminal and middle domains 35 domains in 35 proteins in SCOP superfamily Defensin-like 35 domains in 27 proteins in SCOP superfamily Low density lipoprotein (LDL) reseptor YWTD domain 34 domains in 34 proteins in SCOP superfamily Cyclophilin (peptidylprolyl isomerase) 34 domains in 12 proteins in SCOP superfamily Mannose 6-phosphate receptor domain 34 domains in 33 proteins in SCOP superfamily Frizzled cystein-rich domain 34 domains in 33 proteins in SCOP superfamily ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 34 domains in 32 proteins in SCOP superfamily Rhodanese/Cell cycle control phosphatase 33 domains in 21 proteins in SCOP superfamily BPTI-like 33 domains in 33 proteins in SCOP superfamily Tubulin, GTPase domain 33 domains in 32 proteins in SCOP superfamily Metallo-hydrolase/oxidoreductase 33 domains in 33 proteins in SCOP superfamily Tubulin, C-terminal domain 33 domains in 33 proteins in SCOP superfamily Phosphoglycerate mutase-like 33 domains in 33 proteins in SCOP superfamily Carbonic anhydrase 32 domains in 32 proteins in SCOP superfamily Acid phosphatase/Vanadium-dependent haloperoxidase 32 domains in 32 proteins in SCOP superfamily Acyl-CoA dehydrogenase (flavoprotein), C-terminal domain 31 domains in 29 proteins in SCOP superfamily Annexin 31 domains in 31 proteins in SCOP superfamily DNA/RNA polymerases 31 domains in 20 proteins in SCOP superfamily Phospholipase D/nuclease 31 domains in 15 proteins in SCOP superfamily PKD domain 30 domains in 30 proteins in SCOP superfamily Protein serine/threonine phosphatase 2C 30 domains in 28 proteins in SCOP superfamily Heat shock protein 70kD (HSP70), C-terminal, substrate-binding fragment 30 domains in 18 proteins in SCOP superfamily Apolipoprotein 29 domains in 29 proteins in SCOP superfamily Bet v1-like 28 domains in 24 proteins in SCOP superfamily Formate/glycerate dehydrogenase catalytic domain-like 28 domains in 16 proteins in SCOP superfamily Transglutaminase, two C-terminal domains 28 domains in 19 proteins in SCOP superfamily PRTase-like 28 domains in 25 proteins in SCOP superfamily IGF binding domain 28 domains in 28 proteins in SCOP superfamily Toll/Interleukin receptor TIR domain 28 domains in 15 proteins in SCOP superfamily HSP40/DnaJ peptide-binding domain 27 domains in 27 proteins in SCOP superfamily Phosphatidylinositol-specific phospholipase C (PI-PLC) 27 domains in 27 proteins in SCOP superfamily Metallo-dependent hydrolases 27 domains in 27 proteins in SCOP superfamily ADP-ribosylation 27 domains in 27 proteins in SCOP superfamily Transferrin receptor ectodomain, apical domain 27 domains in 23 proteins in SCOP superfamily Terpenoid cylases/Protein prenyltransferases 26 domains in 26 proteins in SCOP superfamily Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 26 domains in 8 proteins in SCOP superfamily Saposin 26 domains in 26 proteins in SCOP superfamily FAD-linked reductases, C-terminal domain 26 domains in 26 proteins in SCOP superfamily Bcl-2 inhibitors of programmed cell death 26 domains in 26 proteins in SCOP superfamily Sm motif of small nuclear ribonucleoproteins, SNRNP 26 domains in 19 proteins in SCOP superfamily Thiamin diphosphate-binding fold (THDP-binding) 25 domains in 25 proteins in SCOP superfamily t-snare proteins 25 domains in 18 proteins in SCOP superfamily Molybdenum cofactor biosynthesis protein MoeB 24 domains in 24 proteins in SCOP superfamily Resolvase-like 24 domains in 24 proteins in SCOP superfamily DHS-like NAD/FAD-binding domain 24 domains in 9 proteins in SCOP superfamily Serum albumin-like 24 domains in 22 proteins in SCOP superfamily gamma-Crystallin-like 23 domains in 23 proteins in SCOP superfamily GroEL-like chaperones, ATPase domain 23 domains in 12 proteins in SCOP superfamily Elongation factor G (EF-G), domains III and V 23 domains in 23 proteins in SCOP superfamily Pyk2-associated protein beta ARF-GAP domain 23 domains in 23 proteins in SCOP superfamily EF-Tu/eEF-1alpha C-terminal domain 23 domains in 23 proteins in SCOP superfamily GroEL-like chaperone, apical domain 22 domains in 22 proteins in SCOP superfamily Cytochrome b5 22 domains in 22 proteins in SCOP superfamily Caspase-like 22 domains in 22 proteins in SCOP superfamily alpha-Amylases, C-terminal beta-sheet domain 21 domains in 20 proteins in SCOP superfamily 14-3-3 protein 21 domains in 21 proteins in SCOP superfamily Transducin (alpha subunit), insertion domain 21 domains in 21 proteins in SCOP superfamily Leukotriene A4 hydrolase N-terminal domain 21 domains in 21 proteins in SCOP superfamily Diisopropylfluorophosphatase (phosphotriesterase, DFP) 20 domains in 11 proteins in SCOP superfamily GAF domain 20 domains in 17 proteins in SCOP superfamily Single hybrid motif 20 domains in 20 proteins in SCOP superfamily Flavoproteins 20 domains in 20 proteins in SCOP superfamily GroEL-like chaperone, intermediate domain 20 domains in 19 proteins in SCOP superfamily Arginase/deacetylase 20 domains in 17 proteins in SCOP superfamily Nucleoside diphosphate kinases 20 domains in 20 proteins in SCOP superfamily Alpha-L RNA-binding motif 20 domains in 7 proteins in SCOP superfamily Actin-crosslinking proteins 19 domains in 19 proteins in SCOP superfamily L30e-like 19 domains in 19 proteins in SCOP superfamily Phoshotransferase/anion transport protein 19 domains in 19 proteins in SCOP superfamily N-terminal domain of phosphatidylinositol transfer protein sec14p 19 domains in 19 proteins in SCOP superfamily ENTH/VHS domain 19 domains in 19 proteins in SCOP superfamily Transducin (heterotrimeric G protein), gamma chain 19 domains in 18 proteins in SCOP superfamily Adenylyl and guanylyl cyclase catalytic domain 19 domains in 19 proteins in SCOP superfamily RNase A-like 19 domains in 19 proteins in SCOP superfamily Sec7 domain 19 domains in 11 proteins in SCOP superfamily Effector domain of the protein kinase pkn/prk1 18 domains in 12 proteins in SCOP superfamily Cytidine deaminase 18 domains in 15 proteins in SCOP superfamily Carboxypeptidase D, a regulatory domain 18 domains in 18 proteins in SCOP superfamily Creatinase/aminopeptidase 18 domains in 18 proteins in SCOP superfamily Subtilisin-like 18 domains in 15 proteins in SCOP superfamily HIT-like 18 domains in 18 proteins in SCOP superfamily Lipoxigenase 18 domains in 18 proteins in SCOP superfamily Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 18 domains in 17 proteins in SCOP superfamily FMN-linked oxidoreductases 18 domains in 18 proteins in SCOP superfamily Anticodon-binding domain of Class II aaRS 17 domains in 14 proteins in SCOP superfamily Elafin-like 17 domains in 17 proteins in SCOP superfamily Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 17 domains in 17 proteins in SCOP superfamily 5' to 3' exonuclease, C-terminal subdomain 17 domains in 12 proteins in SCOP superfamily Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 17 domains in 17 proteins in SCOP superfamily Ribokinase-like 17 domains in 17 proteins in SCOP superfamily PR-1-like 17 domains in 17 proteins in SCOP superfamily SMAD MH1 domain 17 domains in 14 proteins in SCOP superfamily Sialidases (neuraminidases) 17 domains in 17 proteins in SCOP superfamily NTF2-like 17 domains in 17 proteins in SCOP superfamily Neuronal Sec1, NSec1 17 domains in 17 proteins in SCOP superfamily Anti-sigma factor antagonist SpoIIaa 16 domains in 16 proteins in SCOP superfamily TolB, C-terminal domain 16 domains in 16 proteins in SCOP superfamily Inosine monophosphate dehydrogenase (IMPDH) 16 domains in 16 proteins in SCOP superfamily ARID-like domain 16 domains in 12 proteins in SCOP superfamily Pseudouridine synthase 16 domains in 16 proteins in SCOP superfamily RmlC-like 16 domains in 16 proteins in SCOP superfamily Adenine nucleotide alpha hydrolases 16 domains in 14 proteins in SCOP superfamily Calpain large subunit, middle domain (domain III) 16 domains in 16 proteins in SCOP superfamily Tryptophan synthase beta subunit-like PLP-dependent enzymes 16 domains in 16 proteins in SCOP superfamily Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 15 domains in 15 proteins in SCOP superfamily Translation proteins SH3-like domain 15 domains in 15 proteins in SCOP superfamily SAICAR synthase-like 15 domains in 15 proteins in SCOP superfamily S15/NS1 RNA-binding domain 15 domains in 15 proteins in SCOP superfamily eIF1-like 15 domains in 15 proteins in SCOP superfamily Aldolase 15 domains in 15 proteins in SCOP superfamily PapD-like 15 domains in 9 proteins in SCOP superfamily Ribosomal protein L4 15 domains in 15 proteins in SCOP superfamily Multiheme cytochromes 15 domains in 13 proteins in SCOP superfamily 6-phosphogluconate dehydrogenase C-terminal domain-like 14 domains in 14 proteins in SCOP superfamily Prefoldin 14 domains in 14 proteins in SCOP superfamily Integrin beta tail domain 14 domains in 14 proteins in SCOP superfamily Transcription factor STAT-4 N-domain 14 domains in 14 proteins in SCOP superfamily Biotin carboxylase N-terminal domain-like 14 domains in 14 proteins in SCOP superfamily Purine and uridine phosphorylases 14 domains in 14 proteins in SCOP superfamily Threonyl-tRNA synthetase (ThrRS), second 'additional' domain 14 domains in 14 proteins in SCOP superfamily UBA-like 14 domains in 13 proteins in SCOP superfamily Zn-binding RNA polymerase subunits 14 domains in 14 proteins in SCOP superfamily Six-hairpin glycosyltransferases 14 domains in 14 proteins in SCOP superfamily Outer arm dynein light chain 1 14 domains in 14 proteins in SCOP superfamily Class II aldolase 14 domains in 14 proteins in SCOP superfamily STAT 14 domains in 14 proteins in SCOP superfamily CAD & PB1 domains 14 domains in 14 proteins in SCOP superfamily Heme-dependent peroxidases 14 domains in 14 proteins in SCOP superfamily Composite domain of metallo-dependent hydrolases 14 domains in 14 proteins in SCOP superfamily Aminoacid dehydrogenase-like, N-terminal domain 14 domains in 10 proteins in SCOP superfamily Putative DNA-binding domain 14 domains in 14 proteins in SCOP superfamily Seven-hairpin glycosyltransferases 13 domains in 13 proteins in SCOP superfamily Alpha-macroglobulin receptor domain 13 domains in 13 proteins in SCOP superfamily Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 13 domains in 13 proteins in SCOP superfamily Cytochrome c 13 domains in 7 proteins in SCOP superfamily 4'-phosphopantetheinyl transferase; possibly related to the IspF and YjgF-like superfamilies (SFlink) 13 domains in 13 proteins in SCOP superfamily GLA-domain 13 domains in 8 proteins in SCOP superfamily PHM/PNGase F 13 domains in 13 proteins in SCOP superfamily Di-copper centre-containing domain 13 domains in 13 proteins in SCOP superfamily Translational machinery components 13 domains in 10 proteins in SCOP superfamily LCCL domain 13 domains in 13 proteins in SCOP superfamily Class I glutamine amidotransferase-like 12 domains in 12 proteins in SCOP superfamily ADC-like 12 domains in 12 proteins in SCOP superfamily beta and beta-prime subunits of DNA dependent RNA-polymerase 12 domains in 12 proteins in SCOP superfamily Ferritin-like 12 domains in 12 proteins in SCOP superfamily DNA ligase/mRNA capping enzyme, catalytic domain 12 domains in 12 proteins in SCOP superfamily Lactate & malate dehydrogenases, C-terminal domain 12 domains in 11 proteins in SCOP superfamily Hairpin loop containing domain-like 12 domains in 12 proteins in SCOP superfamily FAD-binding domain 12 domains in 12 proteins in SCOP superfamily ACP-like 12 domains in 12 proteins in SCOP superfamily F-MuLV receptor-binding domain 12 domains in 12 proteins in SCOP superfamily Thermostable subdomain from chicken villin headpiece 12 domains in 12 proteins in SCOP superfamily Nitric oxide (NO) synthase oxygenase domain 12 domains in 10 proteins in SCOP superfamily C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 12 domains in 12 proteins in SCOP superfamily Sugar phosphatases 12 domains in 12 proteins in SCOP superfamily Acyl-CoA binding protein 12 domains in 2 proteins in SCOP superfamily Granulin repeat 12 domains in 7 proteins in SCOP superfamily TATA-box binding protein-like 12 domains in 12 proteins in SCOP superfamily His-Me finger endonucleases 11 domains in 11 proteins in SCOP superfamily C-terminal domain of adenylylcyclase associated protein 11 domains in 11 proteins in SCOP superfamily Moesin tail domain 11 domains in 11 proteins in SCOP superfamily Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit 11 domains in 11 proteins in SCOP superfamily Transcriptional factor tubby, C-terminal domain 11 domains in 9 proteins in SCOP superfamily Trefoil 11 domains in 11 proteins in SCOP superfamily Cysteine-rich domain of the chaperone protein DnaJ. 11 domains in 6 proteins in SCOP superfamily DNA clamp 11 domains in 11 proteins in SCOP superfamily TIMP-like 11 domains in 11 proteins in SCOP superfamily Phosphoinositide-binding clathrin adaptor, N-terminal domain 11 domains in 11 proteins in SCOP superfamily Isocitrate & isopropylmalate dehydrogenases 11 domains in 11 proteins in SCOP superfamily Synatpobrevin N-terminal domain 11 domains in 11 proteins in SCOP superfamily DNA-binding domain 11 domains in 11 proteins in SCOP superfamily Mannose-binding lectins 11 domains in 3 proteins in SCOP superfamily Staphylococcal nuclease 11 domains in 11 proteins in SCOP superfamily Protease propeptides/inhibitors 11 domains in 11 proteins in SCOP superfamily L-aspartase-like 11 domains in 11 proteins in SCOP superfamily 2Fe-2S ferredoxin-like 11 domains in 11 proteins in SCOP superfamily Insulin-like 11 domains in 11 proteins in SCOP superfamily Anaphylotoxins (complement system) 11 domains in 11 proteins in SCOP superfamily Elongation factor TFIIS domain 2 10 domains in 10 proteins in SCOP superfamily beta-Lactamase/D-ala carboxypeptidase 10 domains in 10 proteins in SCOP superfamily Lysozyme-like 10 domains in 10 proteins in SCOP superfamily Glucosamine 6-phosphate deaminase/isomerase 10 domains in 10 proteins in SCOP superfamily Ribulose-phoshate binding barrel 10 domains in 10 proteins in SCOP superfamily Cdc48 domain 2-like 10 domains in 10 proteins in SCOP superfamily Golgi alpha-mannosidase II 10 domains in 10 proteins in SCOP superfamily SRF-like 10 domains in 10 proteins in SCOP superfamily Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase 10 domains in 10 proteins in SCOP superfamily FAD/NAD-linked reductases, dimerisation (C-terminal) domain 10 domains in 10 proteins in SCOP superfamily alpha-ketoacid dehydrogenase kinase, N-terminal domain 9 domains in 9 proteins in SCOP superfamily RuvA domain 2-like 9 domains in 9 proteins in SCOP superfamily DNA polymerase beta, N-terminal domain-like 9 domains in 9 proteins in SCOP superfamily C-terminal domain of alpha and beta subunits of F1 ATP synthase 9 domains in 8 proteins in SCOP superfamily LEM domain 9 domains in 8 proteins in SCOP superfamily Succinyl-CoA synthetase domains 9 domains in 5 proteins in SCOP superfamily Phosphofructokinase 9 domains in 5 proteins in SCOP superfamily Colipase-like 9 domains in 9 proteins in SCOP superfamily beta-Galactosidase/glucuronidase domain 9 domains in 9 proteins in SCOP superfamily SAND domain 9 domains in 9 proteins in SCOP superfamily Acylphosphatase 9 domains in 9 proteins in SCOP superfamily Nucleotide-binding domain 9 domains in 9 proteins in SCOP superfamily Glutamine synthase/guanidino kinase catalytic domain 9 domains in 9 proteins in SCOP superfamily Transketolase C-terminal domain-like 9 domains in 9 proteins in SCOP superfamily Ribosomal protein L30p/L7e 9 domains in 9 proteins in SCOP superfamily eEF-1beta-like 8 domains in 6 proteins in SCOP superfamily Arp2/3 complex subunits 8 domains in 4 proteins in SCOP superfamily Aspartate/ornithine carbamoyltransferase 8 domains in 8 proteins in SCOP superfamily N-terminal domain of cbl (N-cbl) 8 domains in 5 proteins in SCOP superfamily Nucleoplasmin core 8 domains in 8 proteins in SCOP superfamily Microbial and mitochondrial ADK, insert "zinc finger" domain 8 domains in 8 proteins in SCOP superfamily CoA-dependent acyltransferases 8 domains in 8 proteins in SCOP superfamily Trimeric LpxA-like enzymes 8 domains in 8 proteins in SCOP superfamily Esterase/acetylhydrolase 8 domains in 8 proteins in SCOP superfamily Profilin (actin-binding protein) 8 domains in 8 proteins in SCOP superfamily A heparin-binding domain 8 domains in 8 proteins in SCOP superfamily PK beta-barrel domain-like 8 domains in 8 proteins in SCOP superfamily Translation initiation factor eIF4e 8 domains in 8 proteins in SCOP superfamily Retrovirus capsid protein, N-terminal core domain 8 domains in 8 proteins in SCOP superfamily N-terminal domain of alpha and beta subunits of F1 ATP synthase 8 domains in 8 proteins in SCOP superfamily P-domain of calnexin/calreticulin 8 domains in 8 proteins in SCOP superfamily Enolase C-terminal domain-like 8 domains in 8 proteins in SCOP superfamily Creatinase/prolidase N-terminal domain 7 domains in 7 proteins in SCOP superfamily Guanido kinases 7 domains in 7 proteins in SCOP superfamily Ribosomal protein L22 7 domains in 7 proteins in SCOP superfamily RBP11-like subunits of RNA polymerase 7 domains in 7 proteins in SCOP superfamily D-Tyr tRNAtyr deacylase 7 domains in 7 proteins in SCOP superfamily Undecaprenyl diphosphate synthase 7 domains in 7 proteins in SCOP superfamily Ribosomal protein L1 7 domains in 7 proteins in SCOP superfamily PABC (PABP) domain 7 domains in 7 proteins in SCOP superfamily Zn-binding ribosomal proteins 7 domains in 6 proteins in SCOP superfamily Metallothionein 7 domains in 7 proteins in SCOP superfamily Ribosomal proteins L15p and L18e 7 domains in 7 proteins in SCOP superfamily Tetraspanin 7 domains in 7 proteins in SCOP superfamily Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 7 domains in 7 proteins in SCOP superfamily ISP domain 7 domains in 7 proteins in SCOP superfamily Ribosomal protein S18 7 domains in 3 proteins in SCOP superfamily PAH2 domain 7 domains in 7 proteins in SCOP superfamily D-amino acid aminotransferase-like PLP-dependent enzymes 7 domains in 7 proteins in SCOP superfamily Formyltransferase 7 domains in 7 proteins in SCOP superfamily LexA/Signal peptidase 7 domains in 7 proteins in SCOP superfamily Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) 7 domains in 7 proteins in SCOP superfamily Inorganic pyrophosphatase 7 domains in 7 proteins in SCOP superfamily Terpenoid synthases 7 domains in 7 proteins in SCOP superfamily Oncogene products 7 domains in 7 proteins in SCOP superfamily PEBP-like 7 domains in 7 proteins in SCOP superfamily Sterol carrier protein, SCP 7 domains in 7 proteins in SCOP superfamily MDM2 7 domains in 7 proteins in SCOP superfamily 4Fe-4S ferredoxins 7 domains in 7 proteins in SCOP superfamily DNA-binding domain of retroviral integrase 7 domains in 7 proteins in SCOP superfamily Retroviral matrix proteins 7 domains in 7 proteins in SCOP superfamily Nuclear receptor coactivator Src-1 7 domains in 7 proteins in SCOP superfamily Domain of poly(ADP-ribose) polymerase 7 domains in 7 proteins in SCOP superfamily Enolase N-terminal domain-like 7 domains in 7 proteins in SCOP superfamily Hedgehog/DD-pepidase 7 domains in 7 proteins in SCOP superfamily DNA repair protein MutS, domain III 6 domains in 6 proteins in SCOP superfamily p53 tetramerization domain 6 domains in 6 proteins in SCOP superfamily Telomeric repeat binding factor (TRF) dimerisation domain 6 domains in 6 proteins in SCOP superfamily Dynein light chain 8 (DLC8) 6 domains in 2 proteins in SCOP superfamily S-adenosylmethionine synthetase 6 domains in 6 proteins in SCOP superfamily Clathrin adaptor appendage domain 6 domains in 6 proteins in SCOP superfamily Hedgehog/intein (Hint) domain 6 domains in 6 proteins in SCOP superfamily ValRS/IleRS editing domain 6 domains in 6 proteins in SCOP superfamily Ku heterodimer subunits 6 domains in 6 proteins in SCOP superfamily Uteroglobin-like 6 domains in 6 proteins in SCOP superfamily Clathrin adaptor appendage domain 6 domains in 6 proteins in SCOP superfamily CO dehydrogenase molybdoprotein N-domain-like 6 domains in 3 proteins in SCOP superfamily Wiscott-Aldrich syndrome protein, WASP, C-terminal domain 6 domains in 6 proteins in SCOP superfamily Thiamin pyrophosphokinase, catalytic domain 6 domains in 6 proteins in SCOP superfamily PLP-binding barrel 6 domains in 6 proteins in SCOP superfamily DNA-glycosylase 6 domains in 6 proteins in SCOP superfamily The spindle assembly checkpoint protein mad2 6 domains in 6 proteins in SCOP superfamily FAH 6 domains in 6 proteins in SCOP superfamily Transferrin receptor ectodomain, C-terminal domain 6 domains in 6 proteins in SCOP superfamily GFP-like 6 domains in 6 proteins in SCOP superfamily Aconitase, C-terminal domain 6 domains in 3 proteins in SCOP superfamily Midkine 6 domains in 6 proteins in SCOP superfamily N-terminal Zn binding domain of HIV integrase 6 domains in 6 proteins in SCOP superfamily A class II aminoacyl-tRNA synthetase N-domain 6 domains in 6 proteins in SCOP superfamily Ribosomal protein S2 5 domains in 5 proteins in SCOP superfamily ADP ribosyl cyclase 5 domains in 5 proteins in SCOP superfamily Aromatic aminoacid monoxygenases, catalytic and oligomerization domains 5 domains in 5 proteins in SCOP superfamily Soluble quinoprotein glucose dehydrogenase 5 domains in 5 proteins in SCOP superfamily beta-N-acetylhexosaminidase domain 5 domains in 5 proteins in SCOP superfamily B3/B4 domain of PheRS, PheT 5 domains in 5 proteins in SCOP superfamily Proteasome activator reg(alpha) 5 domains in 5 proteins in SCOP superfamily Retrovirus capsid protein C-terminal domain 5 domains in 5 proteins in SCOP superfamily Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) 5 domains in 5 proteins in SCOP superfamily L9 N-domain-like 5 domains in 5 proteins in SCOP superfamily Ribosomal proteins L23 and L15e 5 domains in 5 proteins in SCOP superfamily Aconitase, first 3 domains 5 domains in 5 proteins in SCOP superfamily Chitinase insertion domain 5 domains in 5 proteins in SCOP superfamily DNA repair protein MutS, domain I 5 domains in 5 proteins in SCOP superfamily DNA polymerase III clamp loader subunits, C-terminal domain 5 domains in 5 proteins in SCOP superfamily Copper amine oxidase, domain 3 (catalytic) 5 domains in 5 proteins in SCOP superfamily Epsilon subunit of F1F0-ATP synthase N-terminal domain 5 domains in 5 proteins in SCOP superfamily Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain 5 domains in 5 proteins in SCOP superfamily Leucine aminopeptidase, N-terminal domain 5 domains in 5 proteins in SCOP superfamily Uroporphyrinogen decarboxylase, UROD 5 domains in 5 proteins in SCOP superfamily Core binding factor beta, CBF 5 domains in 5 proteins in SCOP superfamily SAP domain 5 domains in 5 proteins in SCOP superfamily Prolyl oligopeptidase, N-terminal domain 5 domains in 5 proteins in SCOP superfamily LysM domain 5 domains in 5 proteins in SCOP superfamily Eukaryotic DNA topoisomerase I, dispensable insert domain 5 domains in 5 proteins in SCOP superfamily ETFP adenine nucleotide-binding domain-like 5 domains in 5 proteins in SCOP superfamily Thiamin pyrophosphokinase, substrate-binding domain 5 domains in 5 proteins in SCOP superfamily Regulatory domain in the aminoacid metabolism 5 domains in 5 proteins in SCOP superfamily Insert subdomain of RNA polymerase alpha subunit 5 domains in 5 proteins in SCOP superfamily Protein-L-isoaspartyl O-methyltransferase, C-terminal domain 5 domains in 5 proteins in SCOP superfamily Poly(A) polymerase, C-terminal domain 5 domains in 5 proteins in SCOP superfamily CheY-like 5 domains in 4 proteins in SCOP superfamily Molybdenum cofactor biosynthesis proteins 5 domains in 5 proteins in SCOP superfamily DNA glycosylase 5 domains in 5 proteins in SCOP superfamily FMT C-terminal domain-like 5 domains in 5 proteins in SCOP superfamily tRNA splicing endonuclease, C-terminal domain 5 domains in 5 proteins in SCOP superfamily Ribosomal protein S10 5 domains in 5 proteins in SCOP superfamily Clavaminate synthase-like 4 domains in 4 proteins in SCOP superfamily Ribosomal protein S3 C-terminal domain 4 domains in 4 proteins in SCOP superfamily Rudiment single hybrid motif 4 domains in 4 proteins in SCOP superfamily Prokaryotic type KH domain (pKH-domain) 4 domains in 4 proteins in SCOP superfamily N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) mutase PurE 4 domains in 4 proteins in SCOP superfamily Thiol oxidase Erv2p 4 domains in 4 proteins in SCOP superfamily Alanine racemase-like, C-terminal domain 4 domains in 2 proteins in SCOP superfamily Glutaconate-CoA transferase subunits 4 domains in 4 proteins in SCOP superfamily Ribosomal protein L11, N-terminal domain 4 domains in 4 proteins in SCOP superfamily Phosphoglycerate kinase 4 domains in 4 proteins in SCOP superfamily Ribosomal protein L11, C-terminal domain 4 domains in 4 proteins in SCOP superfamily DNA repair protein Rad51, N-terminal domain 4 domains in 4 proteins in SCOP superfamily XRCC4, N-terminal domain 4 domains in 2 proteins in SCOP superfamily Ribosomal protein L6 4 domains in 4 proteins in SCOP superfamily DNA repair protein MutM (Fpg) 4 domains in 4 proteins in SCOP superfamily CO dehydrogenase flavoprotein C-terminal domain-like 4 domains in 4 proteins in SCOP superfamily Molybdopterin synthase subunit MoaE 4 domains in 4 proteins in SCOP superfamily Tachycitin 4 domains in 4 proteins in SCOP superfamily Nuclear receptor coactivator interlocking domain 4 domains in 2 proteins in SCOP superfamily Formiminotransferase domain of formiminotransferase-cyclodeaminase. 4 domains in 4 proteins in SCOP superfamily Ribosomal protein L13 4 domains in 3 proteins in SCOP superfamily Tetrahydrobiopterin biosynthesis enzymes-like 4 domains in 4 proteins in SCOP superfamily Ribosomal protein L14 4 domains in 4 proteins in SCOP superfamily Carbamate kinase-like 4 domains in 4 proteins in SCOP superfamily Prion-like 4 domains in 4 proteins in SCOP superfamily Cu,Zn superoxide dismutase-like 4 domains in 4 proteins in SCOP superfamily Bacteriophage T7 lysozyme (Zn amidase) 4 domains in 4 proteins in SCOP superfamily Starch-binding domain 4 domains in 4 proteins in SCOP superfamily EPT/RTPC-like 4 domains in 4 proteins in SCOP superfamily Ribosomal protein S7 4 domains in 4 proteins in SCOP superfamily Citrate synthase 4 domains in 4 proteins in SCOP superfamily Quinolinic acid phosphoribosyltransferase, C-terminal domain 4 domains in 4 proteins in SCOP superfamily Epsilon subunit of F1F0-ATP synthase C-terminal domain 4 domains in 4 proteins in SCOP superfamily Rubredoxin-like 4 domains in 4 proteins in SCOP superfamily Cell cycle regulatory proteins 4 domains in 4 proteins in SCOP superfamily 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 4 domains in 4 proteins in SCOP superfamily PEP carboxykinase N-terminal domain 4 domains in 4 proteins in SCOP superfamily DNA repair protein MutS, domain II 4 domains in 4 proteins in SCOP superfamily RPB5-like RNA polymerase subunit 4 domains in 4 proteins in SCOP superfamily PFL-like glycyl radical enzymes 4 domains in 4 proteins in SCOP superfamily HRDC-like 4 domains in 4 proteins in SCOP superfamily PEP carboxykinase-like 4 domains in 4 proteins in SCOP superfamily FAD-linked oxidases, C-terminal domain 4 domains in 4 proteins in SCOP superfamily R1 subunit of ribonucleotide reductase, N-terminal domain 4 domains in 3 proteins in SCOP superfamily Thioesterase/thiol ester dehydrase-isomerase 4 domains in 4 proteins in SCOP superfamily Heparin-binding domain from vascular endothelial growth factor 4 domains in 4 proteins in SCOP superfamily Transcription factor IIA (TFIIA), N-terminal domain 4 domains in 4 proteins in SCOP superfamily PGBD-like 4 domains in 4 proteins in SCOP superfamily DNA breaking-rejoining enzymes 4 domains in 4 proteins in SCOP superfamily Zinc beta-ribbon 4 domains in 4 proteins in SCOP superfamily Pentein 4 domains in 4 proteins in SCOP superfamily CO dehydrogenase ISP C-domain like 4 domains in 4 proteins in SCOP superfamily SIS domain 4 domains in 4 proteins in SCOP superfamily Molybdemum cofactor-binding domain 4 domains in 4 proteins in SCOP superfamily alpha-helical ferredoxin 3 domains in 3 proteins in SCOP superfamily Chelatase 3 domains in 3 proteins in SCOP superfamily Pyruvate kinase, C-terminal domain 3 domains in 3 proteins in SCOP superfamily Hypothetical protein MTH1598 3 domains in 3 proteins in SCOP superfamily NAD-binding domain of HMG-CoA reductase 3 domains in 3 proteins in SCOP superfamily Cytosolic phospholipase A2 catalytic domain 3 domains in 3 proteins in SCOP superfamily Arp2/3 complex 16 kDa subunit ARPC5 3 domains in 3 proteins in SCOP superfamily Smac/diablo 3 domains in 3 proteins in SCOP superfamily Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain 3 domains in 3 proteins in SCOP superfamily Phosphotyrosine protein phosphatases I 3 domains in 3 proteins in SCOP superfamily Triosephosphate isomerase (TIM) 3 domains in 3 proteins in SCOP superfamily Anticodon-binding domain of PheRS 3 domains in 2 proteins in SCOP superfamily RNase III endonuclease domain 3 domains in 3 proteins in SCOP superfamily Cutinase-like 3 domains in 3 proteins in SCOP superfamily Signal recognition particle alu RNA binding heterodimer, SRP9/14 3 domains in 3 proteins in SCOP superfamily Hypothetical protein MT938 (MTH938) 3 domains in 3 proteins in SCOP superfamily Dihydrofolate reductases 3 domains in 3 proteins in SCOP superfamily Heme oxygenase 3 domains in 3 proteins in SCOP superfamily Maf/Ham1 3 domains in 3 proteins in SCOP superfamily Eukaryotic RPB5 N-terminal domain 3 domains in 3 proteins in SCOP superfamily Phosphoenolpyruvate/pyruvate domain 3 domains in 3 proteins in SCOP superfamily Quinolinic acid phosphoribosyltransferase, N-terminal domain 3 domains in 3 proteins in SCOP superfamily Ribosomal protein L25-like 3 domains in 3 proteins in SCOP superfamily Methyl-coenzyme M reductase alpha and beta chain C-terminal domain 3 domains in 3 proteins in SCOP superfamily Thymidylate synthase/dCMP hydroxymethylase 3 domains in 3 proteins in SCOP superfamily Glutamine synthetase, N-terminal domain 3 domains in 3 proteins in SCOP superfamily Copper amine oxidase, domains 1 and 2 3 domains in 3 proteins in SCOP superfamily Methylglyoxal synthase-like 3 domains in 3 proteins in SCOP superfamily SRP19 3 domains in 3 proteins in SCOP superfamily Head domain of nucleotide exchange factor GrpE 3 domains in 3 proteins in SCOP superfamily Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 3 domains in 3 proteins in SCOP superfamily SinR repressor dimerisation domain-like 3 domains in 3 proteins in SCOP superfamily GYF domain 3 domains in 3 proteins in SCOP superfamily Acidic mitochondrial matrix protein p32 3 domains in 3 proteins in SCOP superfamily FAT domain of focal adhesion kinase 3 domains in 3 proteins in SCOP superfamily Cytochrome c oxidase subunit h 3 domains in 2 proteins in SCOP superfamily TAZ domain 3 domains in 3 proteins in SCOP superfamily BAG domain 3 domains in 3 proteins in SCOP superfamily Cysteine hydrolase 3 domains in 3 proteins in SCOP superfamily Formate dehydrogenase/DMSO reductase, domains 1-3 3 domains in 3 proteins in SCOP superfamily Initiation factor IF2/eIF5b, domain 3 3 domains in 2 proteins in SCOP superfamily Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 3 domains in 3 proteins in SCOP superfamily Transthyretin (prealbumin) 3 domains in 3 proteins in SCOP superfamily Rap30/74 interaction domains 3 domains in 3 proteins in SCOP superfamily Ribosomal protein L5 3 domains in 3 proteins in SCOP superfamily Transcription factor IIA (TFIIA), N-terminal domain 3 domains in 3 proteins in SCOP superfamily Fe-only hydrogenase 3 domains in 3 proteins in SCOP superfamily Malate synthase G 3 domains in 3 proteins in SCOP superfamily Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain 3 domains in 3 proteins in SCOP superfamily Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 3 domains in 3 proteins in SCOP superfamily PMP inhibitors 3 domains in 3 proteins in SCOP superfamily N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 2 domains in 2 proteins in SCOP superfamily Phage fibre proteins 2 domains in 2 proteins in SCOP superfamily Succinate dehydrogenase/fumarate reductase catalytic domain 2 domains in 2 proteins in SCOP superfamily Pectin lyase-like 2 domains in 2 proteins in SCOP superfamily Cobalt precorrin-4 methyltransferase CbiF 2 domains in 2 proteins in SCOP superfamily Mitochondrial import receptor subunit Tom20 2 domains in 2 proteins in SCOP superfamily Barrier-to-autointegration factor, BAF 2 domains in 2 proteins in SCOP superfamily Neurophysin II 2 domains in 2 proteins in SCOP superfamily Cobalamin (vitamin B12)-dependent enzymes 2 domains in 2 proteins in SCOP superfamily Agouti-related protein 2 domains in 2 proteins in SCOP superfamily Cytochrome c oxidase subunit E 2 domains in 2 proteins in SCOP superfamily Peptide methionine sulfoxide reductase 2 domains in 2 proteins in SCOP superfamily Substrate-binding domain of HMG-CoA reductase 2 domains in 2 proteins in SCOP superfamily tRNA-guanine transglycosylase 2 domains in 2 proteins in SCOP superfamily Probable ACP-binding domain of malonyl-CoA ACP transacylase 2 domains in 2 proteins in SCOP superfamily Domain of the SRP/SRP receptor G-proteins 2 domains in 2 proteins in SCOP superfamily S-adenosylmethionine decarboxylase 2 domains in 2 proteins in SCOP superfamily Hypothetical protein MTH637 2 domains in 2 proteins in SCOP superfamily Type II DNA topoisomerase 2 domains in 2 proteins in SCOP superfamily N-terminal domain of DNA photolyase 2 domains in 2 proteins in SCOP superfamily Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain 2 domains in 2 proteins in SCOP superfamily YjeF-like 2 domains in 2 proteins in SCOP superfamily Ribosomal protein L39e 2 domains in 2 proteins in SCOP superfamily Heme-linked catalases 2 domains in 2 proteins in SCOP superfamily Functional domain of the splicing factor Prp18 2 domains in 2 proteins in SCOP superfamily Fe,Mn superoxide dismutase (SOD), N-terminal domain 2 domains in 2 proteins in SCOP superfamily Prokaryotic ribosomal protein L17 2 domains in 2 proteins in SCOP superfamily ATP syntase (F1-ATPase), gamma subunit 2 domains in 2 proteins in SCOP superfamily Ribosomal protein S8 2 domains in 2 proteins in SCOP superfamily GHMP Kinase 2 domains in 2 proteins in SCOP superfamily MHC class II-associated invariant chain ectoplasmic trimerization domain 2 domains in 2 proteins in SCOP superfamily Catalytic domain of malonyl-CoA ACP transacylase 2 domains in 2 proteins in SCOP superfamily Translation initiation factor IF3, C-terminal domain 2 domains in 2 proteins in SCOP superfamily Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains 2 domains in 2 proteins in SCOP superfamily Methylenetetrahydrofolate reductase 2 domains in 2 proteins in SCOP superfamily AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC 2 domains in 2 proteins in SCOP superfamily Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) 2 domains in 2 proteins in SCOP superfamily Fumarylacetoacetate hydrolase, FAH, N-terminal domain 2 domains in 2 proteins in SCOP superfamily DNA primase 2 domains in 2 proteins in SCOP superfamily Ribosomal protein L7/12, oligomerisation (N-terminal) domain 2 domains in 2 proteins in SCOP superfamily Penicillin-binding protein 5, C-terminal domain 2 domains in 2 proteins in SCOP superfamily Tautomerase/MIF 2 domains in 2 proteins in SCOP superfamily Aromatic compound dioxygenase 2 domains in 2 proteins in SCOP superfamily Cobalamin (vitamin B12)-binding domain 2 domains in 2 proteins in SCOP superfamily Ribosomal protein L10e 2 domains in 2 proteins in SCOP superfamily Ribosomal protein L31e 2 domains in 2 proteins in SCOP superfamily Carboxypeptidase G2, dimerisation domain 2 domains in 2 proteins in SCOP superfamily Ribosomal protein L19 (L19e) 2 domains in 2 proteins in SCOP superfamily Serine proteinase inhibitor lekti, domain one 2 domains in 2 proteins in SCOP superfamily Succinate dehydrogenase/fumarate reductase C-terminal domain 2 domains in 2 proteins in SCOP superfamily Kix domain of CBP (creb binding protein) 2 domains in 2 proteins in SCOP superfamily DNA topoisomerase IV, alpha subunit 2 domains in 2 proteins in SCOP superfamily Mss4-like 2 domains in 2 proteins in SCOP superfamily Endoplasmic reticulum protein ERP29, C-domain 2 domains in 2 proteins in SCOP superfamily FAD-binding (C-terminal) domain of DNA photolyase 2 domains in 2 proteins in SCOP superfamily Manganese-dependent inorganic pyrophosphatase (family II) 2 domains in 2 proteins in SCOP superfamily Fe,Mn superoxide dismutase (SOD), C-terminal domain 2 domains in 2 proteins in SCOP superfamily TRADD, N-terminal domain 2 domains in 2 proteins in SCOP superfamily Translation initiation factor IF3, N-terminal domain 2 domains in 1 proteins in SCOP superfamily Leech antihemostatic proteins 2 domains in 2 proteins in SCOP superfamily Ran-binding protein mog1p 2 domains in 2 proteins in SCOP superfamily Ribosomal protein L7/12, C-terminal domain 2 domains in 2 proteins in SCOP superfamily alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 2 domains in 2 proteins in SCOP superfamily Prokaryotic type I DNA topoisomerase 2 domains in 2 proteins in SCOP superfamily Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 2 domains in 2 proteins in SCOP superfamily Dehydroquinate synthase-like 2 domains in 2 proteins in SCOP superfamily Phosphoglucomutase, C-terminal domain 1 domains in 1 proteins in SCOP superfamily Bacteriochlorophyll A protein 1 domains in 1 proteins in SCOP superfamily Ribosomal protein L36 1 domains in 1 proteins in SCOP superfamily Invasin/intimin cell-adhesion fragments 1 domains in 1 proteins in SCOP superfamily Ribosomal protein S6 1 domains in 1 proteins in SCOP superfamily UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain 1 domains in 1 proteins in SCOP superfamily HSC20 (HSCB), C-terminal oligomerisation domain 1 domains in 1 proteins in SCOP superfamily Elongation factor Ts (EF-Ts), dimerisation domain 1 domains in 1 proteins in SCOP superfamily Scorpion toxin-like 1 domains in 1 proteins in SCOP superfamily Hsp33 domain 1 domains in 1 proteins in SCOP superfamily Ganglioside M2 (gm2) activator 1 domains in 1 proteins in SCOP superfamily Ribosomal protein L29 (L29p) 1 domains in 1 proteins in SCOP superfamily Rab geranylgeranyltransferase alpha-subunit, insert domain 1 domains in 1 proteins in SCOP superfamily Peptidyl-tRNA hydrolase 1 domains in 1 proteins in SCOP superfamily Arp2/3 complex 21 kDa subunit ARPC3 1 domains in 1 proteins in SCOP superfamily Prokaryotic AspRS, insert domain 1 domains in 1 proteins in SCOP superfamily Methionine synthase (activation domain) 1 domains in 1 proteins in SCOP superfamily C-terminal domain of RNA polymerase alpha subunit 1 domains in 1 proteins in SCOP superfamily Frataxin-like 1 domains in 1 proteins in SCOP superfamily GTP cyclohydrolase I feedback regulatory protein, GFRP 1 domains in 1 proteins in SCOP superfamily Duplicated hybrid motif 1 domains in 1 proteins in SCOP superfamily Xylose isomerase-like 1 domains in 1 proteins in SCOP superfamily Molybdenum cofactor biosynthesis protein C, MoaC 1 domains in 1 proteins in SCOP superfamily RNA polymerase subunit RPB10 1 domains in 1 proteins in SCOP superfamily FMN-binding split barrel 1 domains in 1 proteins in SCOP superfamily Ribosomal protein S16 1 domains in 1 proteins in SCOP superfamily Pyrimidine nucleoside phosphorylase N-terminal domain 1 domains in 1 proteins in SCOP superfamily Casein kinase II beta subunit 1 domains in 1 proteins in SCOP superfamily Carbamoyl phosphate synthetase, large subunit connection domain 1 domains in 1 proteins in SCOP superfamily Nickel-iron hydrogenase, small subunit 1 domains in 1 proteins in SCOP superfamily Uroporphyrinogen III synthase (U3S, HemD) 1 domains in 1 proteins in SCOP superfamily Antioxidant defence protein AhpD 1 domains in 1 proteins in SCOP superfamily Ribonuclease Rh-like 1 domains in 1 proteins in SCOP superfamily Hypothetical protein MTH1615 1 domains in 1 proteins in SCOP superfamily Anticodon-binding (C-terminal) domain of glutamyl-tRNA synthetase (GluRS) 1 domains in 1 proteins in SCOP superfamily NADH oxidase/flavin reductase 1 domains in 1 proteins in SCOP superfamily Epsilon subunit of mitochondrial F1F0-ATP synthase 1 domains in 1 proteins in SCOP superfamily MurD-like peptide ligases, peptide-binding domain 1 domains in 1 proteins in SCOP superfamily Sulfite oxidase, middle catalytic domain 1 domains in 1 proteins in SCOP superfamily Urease metallochaperone UreE, N-terminal domain 1 domains in 1 proteins in SCOP superfamily MurD-like peptide ligases, catalytic domain 1 domains in 1 proteins in SCOP superfamily Ribosomal protein S19 1 domains in 1 proteins in SCOP superfamily Tricorn protease N-terminal domain 1 domains in 1 proteins in SCOP superfamily Pyrimidine nucleoside phosphorylase C-terminal domain 1 domains in 1 proteins in SCOP superfamily Ribosomal protein S13 1 domains in 1 proteins in SCOP superfamily Purple acid phosphatase, N-terminal domain 1 domains in 1 proteins in SCOP superfamily Olfactory marker protein 1 domains in 1 proteins in SCOP superfamily VHL 1 domains in 1 proteins in SCOP superfamily beta-Tubulin binding post-chaperonin cofactor Rbl2p 1 domains in 1 proteins in SCOP superfamily N-terminal domain of the delta subunit of the F1F0-ATP synthase 1 domains in 1 proteins in SCOP superfamily Hypothetical protein HI1434 (YbaK homologue) 1 domains in 1 proteins in SCOP superfamily YjgF-like 1 domains in 1 proteins in SCOP superfamily Satiety factor CART (cocaine and amphetamine regulated transcript) 1 domains in 1 proteins in SCOP superfamily Quinoprotein amine dehydrogenase catalytic subunit 1 domains in 1 proteins in SCOP superfamily Ribosomal protein L32e 1 domains in 1 proteins in SCOP superfamily Argininosuccinate synthetase, C-terminal domain 1 domains in 1 proteins in SCOP superfamily Ribosome recycling factor, RRF 1 domains in 1 proteins in SCOP superfamily Signal peptide-binding domain 1 domains in 1 proteins in SCOP superfamily Prismane protein-like 1 domains in 1 proteins in SCOP superfamily Nitrile hydratase alpha chain 1 domains in 1 proteins in SCOP superfamily Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain 1 domains in 1 proteins in SCOP superfamily Tricorn protease N-terminal domain 1 domains in 1 proteins in SCOP superfamily Methylated DNA-protein cysteine methyltransferase, C-terminal domain 1 domains in 1 proteins in SCOP superfamily Type III antifreeze protein 1 domains in 1 proteins in SCOP superfamily Pyrimidine nucleoside phosphorylase central domain 1 domains in 1 proteins in SCOP superfamily Methylated DNA-protein cysteine methyltransferase domain 1 domains in 1 proteins in SCOP superfamily Transcriptional coactivator PC4 C-terminal domain 1 domains in 1 proteins in SCOP superfamily Nickel-iron hydrogenase, large subunit
Gough et al. 2001. "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure.." J. Mol. Biol., 313(4), 903-919. |