| Qualifier name | Description |
| Curated gene name | FANTOM gene name |
| Curated gene symbol | gene symbol, if available |
| Synonym | synonyms, if available |
| Match Status 1 | flags indicating whether a sequence represents a complete or partial gene, or a problem with the clone exists |
| Match Status 2 | flags for possible splice variants, and antisense transcripts |
| Match Status 3 | flags for possible frame shifts, unspliced introns, and chimeric sequences |
| CDS start | CDS start position within the clone, in bp |
| CDS stop | CDS stop position within the clone, in bp |
| CDS status 1 | flags for clones which may represent 5'UTR, 3'UTR, non-coding RNAs, or other artifacts |
| CDS status 2 | flags for possible reverse complemented, 5'-truncated, or 3'-truncated sequences |
| CDS status 3 | flags for possible frame shifts, immature transcripts or unexpected stop codon |
| CDS Note | curator's note about the CDS |
| UTR | curator's comment about UTR |
| Expression Note | curator's comment about expression profile |
| Antisense Hit | FANTOM gene names derived from a matched entry on the reverse compliment strand |
| Note | curator's general comments |
