* fantom3_noncoding.txt

34,030 potentially non-coding transcripts in FANTOM3 clones, as
determined by manual annotation.

Contact: Takeya Kasukawa, Norihiro Maeda and Martin Frith


* f3_ncRNA_conservative.txt

3,652 FANTOM3 clones that are annotated as noncoding, and in addition
have experimental support for completeness of their 5' and 3' ends,
and are not upstream of A-rich tracts in the genome. This set was
made by intersecting f3_ncRNA_liberal with f3_mm5_full-length in
the artifact/truncation directory.

Contact: Martin Frith


* f3_noncoding_vote.txt

38,129 FANTOM3 clones predicted to be noncoding by a majority vote of
CRITICA, mTRANS-040701, and rsCDS. Our most stringent set of 2,886
ncRNAs can be obtained by intersecting f3_ncRNA_conservative with
f3_noncoding_vote.

Contact: Martin Frith