| CAGE Basic Viewer |
| 1. Tags List |
| 2. CTSS Expression |
| 3. TC Expression |
| 4. TU Expression |
| No | Column | Description |
|---|---|---|
| 1. | tag_id | CAGE tag id. |
| 2. | tag_sequence | Sequence of the CAGE tag. |
| 3. | tag_length | Length of the CAGE tag. |
| 4. | tag_average_quality | Average of the CAGE tag's quality value. |
| 5. | tag_gc_content | GC(%) of the CAGE tag. |
| 6. | capped_g_number | Number of capped 'G'. |
| 7. | clone_id | CAGE clone id. |
| 8. | clone_length | Length of the clone. |
| 9. | clone_average_quality | Average of the CAGE clone's quality value. |
| 10. | clone_gc_content | GC(%) of the CAGE clone. |
| 11. | tag_order_no | Order of the CAGE tag on the clone. |
| 12. | clone_tag_number | Number of the CAGE tags on the clone. |
| 13. | tag_orientation | Orientation of the CAGE tag. (F:forward / R:reverse) |
| 14. | tag_start_position | Start position of the CAGE tag. |
| 15. | tag_end_position | End position of the CAGE tag. |
| 16. | library_id | cDNA library id. |
| 17. | rna_lib_id | RNA library id. |
| 18. | tissue_id | Tissue id. |
| 19. | dev_stage_id | Developmental stage id. |
| 20. | mapped_tag_start_pos | Start position of the CAGE tags in the alignment of mapping. |
| 21. | mapped_tag_end_pos | End position of the CAGE tags in the alignment of mapping. |
| 22. | mapped_genome_chr_no | Chromosome Number in the alignment of mapping. |
| 23. | mapped_genome_strand | Strand in the alignment of mapping. |
| 24. | mapped_genome_start_pos | Start position of chromosome sequence in the alignment of mapping. |
| 25. | mapped_genome_end_pos | End position of chromosome sequence in the alignment of mapping. |
| 26. | matched_base_pair | Number of aligned bases. (# of matched base pairs) |
| 27. | gapped_base_pair | Number of gapped bases. |
| 28. | ctss_id | CTSS id |
| 29. | gene_id | related mRNA sequence |
| 30. | tss_id | TC id |
| 31. | tu_id | TU id |
| No | Column | Description |
|---|---|---|
| 1. | ctss_id | CTSS id. |
| 2. | chr_no | Chromosome number of CTSS. |
| 3. | strand | Strand of CTSS. |
| 4. | start_position | Position on the chromosome. |
| 5. | public_db | Public Database Name. |
| 6. | public_id | Public ID. |
| 7. | mrna_evidence | mRNA relation evidence. |
| 8. | tu_id | related TU id. |
| 9. | tss_id | TC id. |
| 10. | tss_chr_no | Representative position on the chromosome of TC. |
| 11. | tss_start_position | Start position on the chromosome of TC covering region. |
| 12. | tss_end_pos | End position of the chromosome of TC covering region. |
| 13. | mapped_tag_number | Number of Mapped Cage Tags. |
| No | Column | Description |
|---|---|---|
| 1. | tss_id | TC id. |
| 2. | chr_no | Chemosome number of TC. |
| 3. | strand | Strand of TC |
| 4. | represent_position | Representative position on the chromosome of TC. |
| 5. | start_position | Start position on the chromosome of TC covering region. |
| 6. | end_position | End position on the chromosome of TC covering region. |
| 7. | mapped_tag_number | Number of Mapped Cage tags. |
| 8. | ctss_number | Number of CTSSs. |
| No | Column | Description |
|---|---|---|
| 1. | tu_id | TU id. |
| 2. | represent_public_db | Public Database Name of representative mRNA. |
| 3. | represent_public_id | Representative mRNA. |
| 4. | represent_chr_no | Chromosome Number of representative mRNA. |
| 5. | represent_strand | Strand of representative mRNA. |
| 6. | represent_start_pos | Start position on the chromosome of representative mRNA. |
| 7. | represent_end_pos | End position on the chromosome of representative mRNA. |
| 8. | mapped_tag_number | Number of Mapped Cage tags. |
| 9. | ctss_number | Number of CTSSs. |
| 10. | tss_number | Number of TCs. |