digraph sample {
graph [rankdir = LR];
 "Hybridization|RIKEN6_PMA_72h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN6_PMA_72h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Data|RIKEN6_PMA_72h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN6_PMA_72h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Extract|RIKEN6_PMA_72h.RNA" [shape = box] ; 
 "Hybridization|RIKEN1_PMA_2h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN1_PMA_2h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Data|RIKEN1_PMA_2h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN1_PMA_2h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Data|RIKEN3_PMA_96h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN3_PMA_96h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Data|illumina_hg6v2_pma_timecourse" [shape = box,URL="http://fantom.gsc.riken.jp/4/download/Tables/human/Microarray/"] ; 
 "Data|RIKEN1_PMA_0h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN1_PMA_0h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Sample|RIKEN1_PMA_4h" [shape = box,label="Sample|RIKEN1_PMA_4h\n(rna_sample_id:2125)\n(condition_name:cultured 4 hours after PMA)"] ; 
 "Extract|RIKEN1_PMA_4h.RNA" [shape = box,label="Extract|RIKEN1_PMA_4h.RNA\n(rna_lib_id:HFI )"] ; 
 "Hybridization|RIKEN6_PMA_48h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN6_PMA_48h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Data|RIKEN6_PMA_48h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN6_PMA_48h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Data|RIKEN6_PMA_12h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN6_PMA_12h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Data|RIKEN3_PMA_0h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN3_PMA_0h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Sample|RIKEN3_PMA_0h" [shape = box,label="Sample|RIKEN3_PMA_0h\n(rna_sample_id:2196)\n(condition_name:untreated cells)"] ; 
 "Extract|RIKEN3_PMA_0h.RNA" [shape = box,label="Extract|RIKEN3_PMA_0h.RNA\n(rna_lib_id:HHA)"] ; 
 "Data|RIKEN1_PMA_1h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN1_PMA_1h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Sample|RIKEN1_PMA_72h" [shape = box,label="Sample|RIKEN1_PMA_72h\n(rna_sample_id:NA)\n(condition_name:cultured 72 hours after PMA)"] ; 
 "Extract|RIKEN1_PMA_72h.RNA" [shape = box] ; 
 "Sample|RIKEN1_PMA_24h" [shape = box,label="Sample|RIKEN1_PMA_24h\n(rna_sample_id:2128)\n(condition_name:cultured 24 hours after PMA)"] ; 
 "Extract|RIKEN1_PMA_24h.RNA" [shape = box,label="Extract|RIKEN1_PMA_24h.RNA\n(rna_lib_id:HFK)"] ; 
 "Data|RIKEN1_PMA_72h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN1_PMA_72h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Sample|RIKEN6_PMA_48h" [shape = box,label="Sample|RIKEN6_PMA_48h\n(rna_sample_id:NA)\n(condition_name:cultured 48 hours after PMA)"] ; 
 "Extract|RIKEN6_PMA_48h.RNA" [shape = box] ; 
 "Data|RIKEN1_PMA_4h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN1_PMA_4h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Data|RIKEN3_PMA_1h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN3_PMA_1h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Sample|RIKEN6_PMA_96h" [shape = box,label="Sample|RIKEN6_PMA_96h\n(rna_sample_id:2256)\n(condition_name:cultured 96 hours after PMA and then 0 hours after LPS stimulation)"] ; 
 "Extract|RIKEN6_PMA_96h.RNA" [shape = box,label="Extract|RIKEN6_PMA_96h.RNA\n(rna_lib_id:HHL)"] ; 
 "Data|RIKEN1_PMA_96h.RNA.TFqRTPCR" [shape = box,URL="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15528",label="Data|RIKEN1_PMA_96h.RNA.TFqRTPCR\n(GEO:GSE15528)"] ; 
 "Data|qrtpcr_pma_timecourse" [shape = box] ; 
 "Sample|RIKEN6_PMA_0h" [shape = box,label="Sample|RIKEN6_PMA_0h\n(rna_sample_id:2245)\n(condition_name:untreated cells)"] ; 
 "Extract|RIKEN6_PMA_0h.RNA" [shape = box,label="Extract|RIKEN6_PMA_0h.RNA\n(rna_lib_id:HHG)"] ; 
 "Data|RIKEN3_PMA_4h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN3_PMA_4h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Extract|RIKEN3_PMA_48h.RNA" [shape = box] ; 
 "Hybridization|RIKEN3_PMA_48h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN3_PMA_48h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Data|RIKEN3_PMA_48h.RNA.TFqRTPCR" [shape = box,URL="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15528",label="Data|RIKEN3_PMA_48h.RNA.TFqRTPCR\n(GEO:GSE15528)"] ; 
 "Extract|RIKEN3_PMA_4h.RNA" [shape = box,label="Extract|RIKEN3_PMA_4h.RNA\n(rna_lib_id:HHC)"] ; 
 "Hybridization|RIKEN3_PMA_4h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN3_PMA_4h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Data|RIKEN3_PMA_4h.RNA.TFqRTPCR" [shape = box,URL="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15528",label="Data|RIKEN3_PMA_4h.RNA.TFqRTPCR\n(GEO:GSE15528)"] ; 
 "Sample|RIKEN3_PMA.CAGE" [shape = box] ; 
 "Extract|RIKEN1_PMA_2h.RNA" [shape = box] ; 
 "Data|RIKEN1_PMA_2h.RNA.TFqRTPCR" [shape = box,URL="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15528",label="Data|RIKEN1_PMA_2h.RNA.TFqRTPCR\n(GEO:GSE15528)"] ; 
 "Sample|RIKEN3_PMA_6h" [shape = box,label="Sample|RIKEN3_PMA_6h\n(rna_sample_id:NA)\n(condition_name:cultured 6 hours after PMA)"] ; 
 "Extract|RIKEN3_PMA_6h.RNA" [shape = box] ; 
 "Extract|RIKEN3_PMA_96h.RNA" [shape = box,label="Extract|RIKEN3_PMA_96h.RNA\n(rna_lib_id:HHF)"] ; 
 "Hybridization|RIKEN3_PMA_96h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN3_PMA_96h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Data|RIKEN3_PMA_96h.RNA.TFqRTPCR" [shape = box,URL="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15528",label="Data|RIKEN3_PMA_96h.RNA.TFqRTPCR\n(GEO:GSE15528)"] ; 
 "Data|RIKEN1_PMA_24h.RNA.TFqRTPCR" [shape = box,URL="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15528",label="Data|RIKEN1_PMA_24h.RNA.TFqRTPCR\n(GEO:GSE15528)"] ; 
 "Hybridization|RIKEN6_PMA_96h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN6_PMA_96h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Data|RIKEN6_PMA_96h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN6_PMA_96h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Extract|RIKEN3_PMA_1h.RNA" [shape = box,label="Extract|RIKEN3_PMA_1h.RNA\n(rna_lib_id:HHB)"] ; 
 "Data|RIKEN3_PMA_1h.RNA.TFqRTPCR" [shape = box,URL="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15528",label="Data|RIKEN3_PMA_1h.RNA.TFqRTPCR\n(GEO:GSE15528)"] ; 
 "Hybridization|RIKEN3_PMA_1h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN3_PMA_1h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Hybridization|RIKEN1_PMA_12h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN1_PMA_12h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Data|RIKEN1_PMA_12h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN1_PMA_12h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Data|RIKEN3_PMA_12h.RNA.TFqRTPCR" [shape = box,URL="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15528",label="Data|RIKEN3_PMA_12h.RNA.TFqRTPCR\n(GEO:GSE15528)"] ; 
 "Data|RIKEN3_PMA_24h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN3_PMA_24h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Sample|RIKEN1_PMA.CAGE" [shape = box] ; 
 "Sample|H93" [shape = box,label="Sample|H93\n(sublib_id:H93-CA)"] ; 
 "Data|RIKEN3_PMA_24h.RNA.TFqRTPCR" [shape = box,URL="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15528",label="Data|RIKEN3_PMA_24h.RNA.TFqRTPCR\n(GEO:GSE15528)"] ; 
 "Sample|RIKEN6_PMA_6h" [shape = box,label="Sample|RIKEN6_PMA_6h\n(rna_sample_id:NA)\n(condition_name:cultured 6 hours after PMA)"] ; 
 "Extract|RIKEN6_PMA_6h.RNA" [shape = box] ; 
 "Extract|RIKEN1_PMA_48h.RNA" [shape = box] ; 
 "Data|RIKEN1_PMA_48h.RNA.TFqRTPCR" [shape = box,URL="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15528",label="Data|RIKEN1_PMA_48h.RNA.TFqRTPCR\n(GEO:GSE15528)"] ; 
 "Hybridization|RIKEN1_PMA_48h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN1_PMA_48h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Hybridization|RIKEN6_PMA_1h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN6_PMA_1h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Data|RIKEN6_PMA_1h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN6_PMA_1h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Data|RIKEN1_PMA_6h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN1_PMA_6h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Data|H93_454_RAW_DATA" [shape = box,URL="http://fantom.gsc.riken.jp/4/download/Tables/human/CAGE/raw_data/"] ; 
 "Data|h93_tag_counts" [shape = box,URL="http://fantom.gsc.riken.jp/4/download/Tables/human/CAGE/tag_counts"] ; 
 "Sample|RIKEN3_PMA_12h" [shape = box,label="Sample|RIKEN3_PMA_12h\n(rna_sample_id:2201)\n(condition_name:cultured 12 hours after PMA)"] ; 
 "Extract|RIKEN3_PMA_12h.RNA" [shape = box,label="Extract|RIKEN3_PMA_12h.RNA\n(rna_lib_id:HHD)"] ; 
 "Sample|I02" [shape = box,label="Sample|I02\n(sublib_id:I02-CA)"] ; 
 "Data|I02_454_RAW_DATA" [shape = box,URL="http://fantom.gsc.riken.jp/4/download/Tables/human/CAGE/raw_data/"] ; 
 "File|h93_mapping" [shape = box,URL="http://fantom.gsc.riken.jp/4/download/Tables/human/CAGE/mapping/"] ; 
 "Extract|RIKEN1_PMA_96h.RNA" [shape = box,label="Extract|RIKEN1_PMA_96h.RNA\n(rna_lib_id:HGC)"] ; 
 "Hybridization|RIKEN1_PMA_96h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN1_PMA_96h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Hybridization|RIKEN6_PMA_4h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN6_PMA_4h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Data|RIKEN6_PMA_4h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN6_PMA_4h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Data|RIKEN1_PMA_48h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN1_PMA_48h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Data|i03_tag_counts" [shape = box,URL="http://fantom.gsc.riken.jp/4/download/Tables/human/CAGE/tag_counts"] ; 
 "File|i03_mapping" [shape = box,URL="http://fantom.gsc.riken.jp/4/download/Tables/human/CAGE/mapping/"] ; 
 "Hybridization|RIKEN1_PMA_72h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN1_PMA_72h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Data|I03_454_RAW_DATA" [shape = box,URL="http://fantom.gsc.riken.jp/4/download/Tables/human/CAGE/raw_data/"] ; 
 "Sample|I03" [shape = box,label="Sample|I03\n(sublib_id:I03-CA)"] ; 
 "Data|RIKEN1_PMA_4h.RNA.TFqRTPCR" [shape = box,URL="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15528",label="Data|RIKEN1_PMA_4h.RNA.TFqRTPCR\n(GEO:GSE15528)"] ; 
 "Hybridization|RIKEN1_PMA_4h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN1_PMA_4h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Sample|RIKEN6_PMA.CAGE" [shape = box] ; 
 "Extract|RIKEN6_PMA_2h.RNA" [shape = box] ; 
 "Hybridization|RIKEN6_PMA_2h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN6_PMA_2h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Sample|RIKEN1_PMA_2h" [shape = box,label="Sample|RIKEN1_PMA_2h\n(rna_sample_id:NA)\n(condition_name:cultured 2 hour after PMA)"] ; 
 "Data|RIKEN3_PMA_48h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN3_PMA_48h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Hybridization|RIKEN3_PMA_0h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN3_PMA_0h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Extract|RIKEN1_PMA_1h.RNA" [shape = box,label="Extract|RIKEN1_PMA_1h.RNA\n(rna_lib_id:HFH)"] ; 
 "Hybridization|RIKEN1_PMA_1h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN1_PMA_1h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Data|RIKEN1_PMA_1h.RNA.TFqRTPCR" [shape = box,URL="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15528",label="Data|RIKEN1_PMA_1h.RNA.TFqRTPCR\n(GEO:GSE15528)"] ; 
 "Sample|RIKEN6_PMA_12h" [shape = box,label="Sample|RIKEN6_PMA_12h\n(rna_sample_id:2252)\n(condition_name:cultured 12 hours after PMA)"] ; 
 "Extract|RIKEN6_PMA_12h.RNA" [shape = box,label="Extract|RIKEN6_PMA_12h.RNA\n(rna_lib_id:HHJ)"] ; 
 "Data|i02_tag_counts" [shape = box,URL="http://fantom.gsc.riken.jp/4/download/Tables/human/CAGE/tag_counts"] ; 
 "File|i02_mapping" [shape = box,URL="http://fantom.gsc.riken.jp/4/download/Tables/human/CAGE/mapping/"] ; 
 "Data|RIKEN3_PMA_2h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN3_PMA_2h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Data|RIKEN3_PMA_2h.RNA.TFqRTPCR" [shape = box,URL="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15528",label="Data|RIKEN3_PMA_2h.RNA.TFqRTPCR\n(GEO:GSE15528)"] ; 
 "Hybridization|RIKEN3_PMA_2h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN3_PMA_2h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Data|RIKEN3_PMA_0h.RNA.TFqRTPCR" [shape = box,URL="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15528",label="Data|RIKEN3_PMA_0h.RNA.TFqRTPCR\n(GEO:GSE15528)"] ; 
 "Hybridization|RIKEN3_PMA_12h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN3_PMA_12h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Data|RIKEN3_PMA_12h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN3_PMA_12h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Sample|RIKEN3_PMA_1h" [shape = box,label="Sample|RIKEN3_PMA_1h\n(rna_sample_id:2197)\n(condition_name:cultured 1 hour after PMA)"] ; 
 "Data|RIKEN1_PMA_96h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN1_PMA_96h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Sample|RIKEN3_PMA_4h" [shape = box,label="Sample|RIKEN3_PMA_4h\n(rna_sample_id:2199)\n(condition_name:cultured 4 hours after PMA)"] ; 
 "Source|F4-THP1" [shape = box,label="Source|F4-THP1\n(tissue_id:237)\n(tissue_type:blood)\n(dev_stage_id:357)\n(days.of.dev_stage:1 year)\n(development.dimensions:NA)\n(cell_line_id:99)\n(cell_line_name:TIB-202 THP-1)\n(collaboration_name:David Hume, Univ. of Queensland)"] ; 
 "Sample|RIKEN3" [shape = box,label="Sample|RIKEN3\n(comment:experimental_name:RIKEN_cell_3rd,rna_batch_name:LOT-No.4)"] ; 
 "Sample|RIKEN6" [shape = box,label="Sample|RIKEN6\n(comment:experimental_name:RIKEN_cell_6th,rna_batch_name:LOT-No.7)"] ; 
 "Sample|RIKEN1" [shape = box,label="Sample|RIKEN1\n(comment:experimental_name:RIKEN_cell_1st,rna_batch_name:LOT-No.2)"] ; 
 "Data|RIKEN3_PMA_6h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN3_PMA_6h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Data|RIKEN6_PMA_24h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN6_PMA_24h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Sample|RIKEN6_PMA_1h" [shape = box,label="Sample|RIKEN6_PMA_1h\n(rna_sample_id:2245)\n(condition_name:cultured 1 hour after PMA)"] ; 
 "Extract|RIKEN6_PMA_1h.RNA" [shape = box,label="Extract|RIKEN6_PMA_1h.RNA\n(rna_lib_id:HHH)"] ; 
 "File|level_123_clusters" [shape = box,URL="http://fantom.gsc.riken.jp/4/download/Tables/human/CAGE/promoters/level_123_clusters/"] ; 
 "Hybridization|RIKEN3_PMA_72h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN3_PMA_72h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Data|RIKEN3_PMA_72h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN3_PMA_72h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Hybridization|RIKEN6_PMA_6h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN6_PMA_6h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Data|RIKEN6_PMA_6h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN6_PMA_6h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Sample|RIKEN3_PMA_72h" [shape = box,label="Sample|RIKEN3_PMA_72h\n(rna_sample_id:NA)\n(condition_name:cultured 72 hours after PMA)"] ; 
 "Extract|RIKEN3_PMA_72h.RNA" [shape = box] ; 
 "Sample|RIKEN3_PMA_24h" [shape = box,label="Sample|RIKEN3_PMA_24h\n(rna_sample_id:2202)\n(condition_name:cultured 24 hours after PMA)"] ; 
 "Extract|RIKEN3_PMA_24h.RNA" [shape = box,label="Extract|RIKEN3_PMA_24h.RNA\n(rna_lib_id:HHE)"] ; 
 "Hybridization|RIKEN3_PMA_24h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN3_PMA_24h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Hybridization|RIKEN3_PMA_6h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN3_PMA_6h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Data|RIKEN3_PMA_6h.RNA.TFqRTPCR" [shape = box,URL="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15528",label="Data|RIKEN3_PMA_6h.RNA.TFqRTPCR\n(GEO:GSE15528)"] ; 
 "Sample|RIKEN6_PMA_4h" [shape = box,label="Sample|RIKEN6_PMA_4h\n(rna_sample_id:2250)\n(condition_name:cultured 4 hours after PMA)"] ; 
 "Extract|RIKEN6_PMA_4h.RNA" [shape = box,label="Extract|RIKEN6_PMA_4h.RNA\n(rna_lib_id:HHI)"] ; 
 "Sample|RIKEN1_PMA_96h" [shape = box,label="Sample|RIKEN1_PMA_96h\n(rna_sample_id:2174)\n(condition_name:cultured 96 hours after PMA and then 0 hours after LPS stimulation)"] ; 
 "Extract|RIKEN3_PMA_2h.RNA" [shape = box] ; 
 "Extract|RIKEN1_PMA_0h.RNA" [shape = box,label="Extract|RIKEN1_PMA_0h.RNA\n(rna_lib_id:HGS)"] ; 
 "Data|RIKEN1_PMA_0h.RNA.TFqRTPCR" [shape = box,URL="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15528",label="Data|RIKEN1_PMA_0h.RNA.TFqRTPCR\n(GEO:GSE15528)"] ; 
 "Hybridization|RIKEN1_PMA_0h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN1_PMA_0h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Sample|RIKEN1_PMA_48h" [shape = box,label="Sample|RIKEN1_PMA_48h\n(rna_sample_id:NA)\n(condition_name:cultured 48 hours after PMA)"] ; 
 "Extract|RIKEN1_PMA_12h.RNA" [shape = box,label="Extract|RIKEN1_PMA_12h.RNA\n(rna_lib_id:HFJ )"] ; 
 "Data|RIKEN1_PMA_12h.RNA.TFqRTPCR" [shape = box,URL="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15528",label="Data|RIKEN1_PMA_12h.RNA.TFqRTPCR\n(GEO:GSE15528)"] ; 
 "Sample|RIKEN1_PMA_1h" [shape = box,label="Sample|RIKEN1_PMA_1h\n(rna_sample_id:2123)\n(condition_name:cultured 1 hour after PMA)"] ; 
 "Sample|RIKEN1_PMA_12h" [shape = box,label="Sample|RIKEN1_PMA_12h\n(rna_sample_id:2127)\n(condition_name:cultured 12 hours after PMA)"] ; 
 "Sample|RIKEN1_PMA_0h" [shape = box,label="Sample|RIKEN1_PMA_0h\n(rna_sample_id:2173)\n(condition_name:untreated cells)"] ; 
 "Sample|RIKEN1_PMA_6h" [shape = box,label="Sample|RIKEN1_PMA_6h\n(rna_sample_id:NA)\n(condition_name:cultured 6 hours after PMA)"] ; 
 "Sample|RIKEN6_PMA_24h" [shape = box,label="Sample|RIKEN6_PMA_24h\n(rna_sample_id:2253)\n(condition_name:cultured 24 hours after PMA)"] ; 
 "Extract|RIKEN6_PMA_24h.RNA" [shape = box,label="Extract|RIKEN6_PMA_24h.RNA\n(rna_lib_id:HHK)"] ; 
 "Sample|RIKEN6_PMA_72h" [shape = box,label="Sample|RIKEN6_PMA_72h\n(rna_sample_id:NA)\n(condition_name:cultured 72 hours after PMA)"] ; 
 "Data|RIKEN6_PMA_2h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN6_PMA_2h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Hybridization|RIKEN6_PMA_0h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN6_PMA_0h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Data|RIKEN6_PMA_0h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN6_PMA_0h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Sample|RIKEN3_PMA_96h" [shape = box,label="Sample|RIKEN3_PMA_96h\n(rna_sample_id:2205)\n(condition_name:cultured 96 hours after PMA and then 0 hours after LPS stimulation)"] ; 
 "Sample|RIKEN3_PMA_48h" [shape = box,label="Sample|RIKEN3_PMA_48h\n(rna_sample_id:NA)\n(condition_name:cultured 48 hours after PMA)"] ; 
 "Sample|RIKEN3_PMA_2h" [shape = box,label="Sample|RIKEN3_PMA_2h\n(rna_sample_id:NA)\n(condition_name:cultured 2 hour after PMA)"] ; 
 "Data|RIKEN1_PMA_72h.RNA.TFqRTPCR" [shape = box,URL="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15528",label="Data|RIKEN1_PMA_72h.RNA.TFqRTPCR\n(GEO:GSE15528)"] ; 
 "Data|RIKEN1_PMA_6h.RNA.TFqRTPCR" [shape = box,URL="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15528",label="Data|RIKEN1_PMA_6h.RNA.TFqRTPCR\n(GEO:GSE15528)"] ; 
 "Extract|RIKEN1_PMA_6h.RNA" [shape = box] ; 
 "Hybridization|RIKEN1_PMA_6h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN1_PMA_6h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Data|RIKEN3_PMA_72h.RNA.TFqRTPCR" [shape = box,URL="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15528",label="Data|RIKEN3_PMA_72h.RNA.TFqRTPCR\n(GEO:GSE15528)"] ; 
 "Sample|RIKEN6_PMA_2h" [shape = box,label="Sample|RIKEN6_PMA_2h\n(rna_sample_id:NA)\n(condition_name:cultured 2 hour after PMA)"] ; 
 "Hybridization|RIKEN6_PMA_12h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN6_PMA_12h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Data|RIKEN1_PMA_24h.RNA_Hyb.Scan" [shape = box,URL="http://cibex.nig.ac.jp/cibex2/ExperimentMiame.do?queryExperimentalDesignAccession=CBX46",label="Data|RIKEN1_PMA_24h.RNA_Hyb.Scan\n(CIBEX:CBX46)"] ; 
 "Hybridization|RIKEN1_PMA_24h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN1_PMA_24h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "Hybridization|RIKEN6_PMA_24h.RNA_Hyb" [shape = box,label="Hybridization|RIKEN6_PMA_24h.RNA_Hyb\n(Array:Illumina Human-6 V2)\n(CIBEX:CAR215)\n(GEO:GPL6102)"] ; 
 "File|http://fantom.gsc.riken.jp/4/download/Tables/human/qRT-PCR/" [shape = box] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_72h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_72h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_72h.RNA)\n(to:Hybridization|RIKEN6_PMA_72h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_2h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_2h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_96h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_0h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_4h)\n(to:Extract|RIKEN1_PMA_4h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_48h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_48h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_12h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_0h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_0h)\n(to:Extract|RIKEN3_PMA_0h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_1h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_72h)\n(to:Extract|RIKEN1_PMA_72h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_24h)\n(to:Extract|RIKEN1_PMA_24h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_72h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_48h)\n(to:Extract|RIKEN6_PMA_48h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_4h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_1h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_96h)\n(to:Extract|RIKEN6_PMA_96h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_96h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [shape=none,URL="",label="TF-qRT-PCR-NORMALIZE"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_0h)\n(to:Extract|RIKEN6_PMA_0h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_4h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_48h.RNA)\n(to:Hybridization|RIKEN3_PMA_48h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_48h.RNA)\n(to:Data|RIKEN3_PMA_48h.RNA.TFqRTPCR) " [shape=none,URL="",label="TF-qRT-PCR"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_4h.RNA)\n(to:Hybridization|RIKEN3_PMA_4h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_4h.RNA)\n(to:Data|RIKEN3_PMA_4h.RNA.TFqRTPCR) " [shape=none,URL="",label="TF-qRT-PCR"] ; 
 " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CGTAA)\n(barcode_id:8)\n(house_keeping_gene:ACTB)\n(mixed_ratio:49)\n(from:Extract|RIKEN3_PMA_4h.RNA)\n(to:Sample|RIKEN3_PMA.CAGE) " [shape=none,URL="",label="454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CGTAA)\n(barcode_id:8)\n(house_keeping_gene:ACTB)\n(mixed_ratio:49)"] ; 
 " TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_2h.RNA)\n(to:Data|RIKEN1_PMA_2h.RNA.TFqRTPCR) " [shape=none,URL="",label="TF-qRT-PCR"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_2h.RNA)\n(to:Hybridization|RIKEN1_PMA_2h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_6h)\n(to:Extract|RIKEN3_PMA_6h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_96h.RNA)\n(to:Hybridization|RIKEN3_PMA_96h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_96h.RNA)\n(to:Data|RIKEN3_PMA_96h.RNA.TFqRTPCR) " [shape=none,URL="",label="TF-qRT-PCR"] ; 
 " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:TTGCA)\n(barcode_id:11)\n(house_keeping_gene:ACTB)\n(mixed_ratio:46.6)\n(from:Extract|RIKEN3_PMA_96h.RNA)\n(to:Sample|RIKEN3_PMA.CAGE) " [shape=none,URL="",label="454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:TTGCA)\n(barcode_id:11)\n(house_keeping_gene:ACTB)\n(mixed_ratio:46.6)"] ; 
 " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_96h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [shape=none,URL="",label="TF-qRT-PCR-NORMALIZE"] ; 
 " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_24h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [shape=none,URL="",label="TF-qRT-PCR-NORMALIZE"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_96h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_96h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_1h.RNA)\n(to:Data|RIKEN3_PMA_1h.RNA.TFqRTPCR) " [shape=none,URL="",label="TF-qRT-PCR"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_1h.RNA)\n(to:Hybridization|RIKEN3_PMA_1h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CATTG)\n(barcode_id:7)\n(house_keeping_gene:ACTB)\n(mixed_ratio:33.1)\n(from:Extract|RIKEN3_PMA_1h.RNA)\n(to:Sample|RIKEN3_PMA.CAGE) " [shape=none,URL="",label="454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CATTG)\n(barcode_id:7)\n(house_keeping_gene:ACTB)\n(mixed_ratio:33.1)"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_12h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_12h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_12h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [shape=none,URL="",label="TF-qRT-PCR-NORMALIZE"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_4h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_4h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_24h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " 454CAGE_step2\n(number_of_1stPCR_tubes:80)\n(number_of_1stPCR_cycles:20)\n(number_of_2ndPCR_tubes:100)\n(number_of_2ndPCR_cycles:8)\n(amount_of_tags_for_XmaJI_cut:84)\n(amount_of_ligated_CAGE_tags:1000)\n(from:Sample|RIKEN1_PMA.CAGE)\n(to:Sample|H93) " [shape=none,URL="",label="454CAGE_step2\n(number_of_1stPCR_tubes:80)\n(number_of_1stPCR_cycles:20)\n(number_of_2ndPCR_tubes:100)\n(number_of_2ndPCR_cycles:8)\n(amount_of_tags_for_XmaJI_cut:84)\n(amount_of_ligated_CAGE_tags:1000)"] ; 
 " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_24h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [shape=none,URL="",label="TF-qRT-PCR-NORMALIZE"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_6h)\n(to:Extract|RIKEN6_PMA_6h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_48h.RNA)\n(to:Data|RIKEN1_PMA_48h.RNA.TFqRTPCR) " [shape=none,URL="",label="TF-qRT-PCR"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_48h.RNA)\n(to:Hybridization|RIKEN1_PMA_48h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_96h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_1h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_1h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_6h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " TAG_EXTRACTION\n(barcode:TTGCA)\n(from:Data|H93_454_RAW_DATA)\n(to:Data|h93_tag_counts) " [shape=none,URL="",label="TAG_EXTRACTION\n(barcode:TTGCA)"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_12h)\n(to:Extract|RIKEN3_PMA_12h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " 454seq\n(from:Sample|I02)\n(to:Data|I02_454_RAW_DATA) " [shape=none,URL="",label="454seq"] ; 
 " MAPPING\n(genome_assemblies:hg18)\n(from:Data|h93_tag_counts)\n(to:File|h93_mapping) " [shape=none,URL="",label="MAPPING\n(genome_assemblies:hg18)"] ; 
 " 454CAGE_step2\n(number_of_1stPCR_tubes:40)\n(number_of_1stPCR_cycles:20)\n(number_of_2ndPCR_tubes:47)\n(number_of_2ndPCR_cycles:8)\n(amount_of_tags_for_XmaJI_cut:11.92)\n(amount_of_ligated_CAGE_tags:500)\n(from:Sample|RIKEN3_PMA.CAGE)\n(to:Sample|I02) " [shape=none,URL="",label="454CAGE_step2\n(number_of_1stPCR_tubes:40)\n(number_of_1stPCR_cycles:20)\n(number_of_2ndPCR_tubes:47)\n(number_of_2ndPCR_cycles:8)\n(amount_of_tags_for_XmaJI_cut:11.92)\n(amount_of_ligated_CAGE_tags:500)"] ; 
 " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:TTGCA)\n(barcode_id:11)\n(house_keeping_gene:ACTB)\n(mixed_ratio:41)\n(from:Extract|RIKEN1_PMA_96h.RNA)\n(to:Sample|RIKEN1_PMA.CAGE) " [shape=none,URL="",label="454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:TTGCA)\n(barcode_id:11)\n(house_keeping_gene:ACTB)\n(mixed_ratio:41)"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_96h.RNA)\n(to:Hybridization|RIKEN1_PMA_96h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_96h.RNA)\n(to:Data|RIKEN1_PMA_96h.RNA.TFqRTPCR) " [shape=none,URL="",label="TF-qRT-PCR"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_4h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_4h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_48h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_48h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " MAPPING\n(genome_assemblies:hg18)\n(from:Data|i03_tag_counts)\n(to:File|i03_mapping) " [shape=none,URL="",label="MAPPING\n(genome_assemblies:hg18)"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_72h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_72h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " TAG_EXTRACTION\n(barcode:TTGCA)\n(from:Data|I03_454_RAW_DATA)\n(to:Data|i03_tag_counts) " [shape=none,URL="",label="TAG_EXTRACTION\n(barcode:TTGCA)"] ; 
 " 454seq\n(from:Sample|I03)\n(to:Data|I03_454_RAW_DATA) " [shape=none,URL="",label="454seq"] ; 
 " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CGTAA)\n(barcode_id:8)\n(house_keeping_gene:ACTB)\n(mixed_ratio:19.399999999999999)\n(from:Extract|RIKEN1_PMA_4h.RNA)\n(to:Sample|RIKEN1_PMA.CAGE) " [shape=none,URL="",label="454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CGTAA)\n(barcode_id:8)\n(house_keeping_gene:ACTB)\n(mixed_ratio:19.399999999999999)"] ; 
 " TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_4h.RNA)\n(to:Data|RIKEN1_PMA_4h.RNA.TFqRTPCR) " [shape=none,URL="",label="TF-qRT-PCR"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_4h.RNA)\n(to:Hybridization|RIKEN1_PMA_4h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " 454CAGE_step2\n(number_of_1stPCR_tubes:100)\n(number_of_1stPCR_cycles:20)\n(number_of_2ndPCR_tubes:97)\n(number_of_2ndPCR_cycles:8)\n(amount_of_tags_for_XmaJI_cut:24.42)\n(amount_of_ligated_CAGE_tags:500)\n(from:Sample|RIKEN6_PMA.CAGE)\n(to:Sample|I03) " [shape=none,URL="",label="454CAGE_step2\n(number_of_1stPCR_tubes:100)\n(number_of_1stPCR_cycles:20)\n(number_of_2ndPCR_tubes:97)\n(number_of_2ndPCR_cycles:8)\n(amount_of_tags_for_XmaJI_cut:24.42)\n(amount_of_ligated_CAGE_tags:500)"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_2h.RNA)\n(to:Hybridization|RIKEN6_PMA_2h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_2h)\n(to:Extract|RIKEN1_PMA_2h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_48h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_0h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_0h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CATTG)\n(barcode_id:7)\n(house_keeping_gene:ACTB)\n(mixed_ratio:39.200000000000003)\n(from:Extract|RIKEN1_PMA_1h.RNA)\n(to:Sample|RIKEN1_PMA.CAGE) " [shape=none,URL="",label="454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CATTG)\n(barcode_id:7)\n(house_keeping_gene:ACTB)\n(mixed_ratio:39.200000000000003)"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_1h.RNA)\n(to:Hybridization|RIKEN1_PMA_1h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_1h.RNA)\n(to:Data|RIKEN1_PMA_1h.RNA.TFqRTPCR) " [shape=none,URL="",label="TF-qRT-PCR"] ; 
 " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_2h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [shape=none,URL="",label="TF-qRT-PCR-NORMALIZE"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_12h)\n(to:Extract|RIKEN6_PMA_12h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " MAPPING\n(genome_assemblies:hg18)\n(from:Data|i02_tag_counts)\n(to:File|i02_mapping) " [shape=none,URL="",label="MAPPING\n(genome_assemblies:hg18)"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_2h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_2h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [shape=none,URL="",label="TF-qRT-PCR-NORMALIZE"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_2h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_2h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_0h.RNA)\n(to:Data|RIKEN3_PMA_0h.RNA.TFqRTPCR) " [shape=none,URL="",label="TF-qRT-PCR"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_0h.RNA)\n(to:Hybridization|RIKEN3_PMA_0h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:GTTAC)\n(barcode_id:6)\n(house_keeping_gene:ACTB)\n(mixed_ratio:31.9)\n(from:Extract|RIKEN3_PMA_0h.RNA)\n(to:Sample|RIKEN3_PMA.CAGE) " [shape=none,URL="",label="454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:GTTAC)\n(barcode_id:6)\n(house_keeping_gene:ACTB)\n(mixed_ratio:31.9)"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_12h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_12h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_1h)\n(to:Extract|RIKEN3_PMA_1h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_48h.RNA)\n(to:Hybridization|RIKEN6_PMA_48h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_48h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [shape=none,URL="",label="TF-qRT-PCR-NORMALIZE"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_96h.RNA)\n(to:Hybridization|RIKEN6_PMA_96h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:TTGCA)\n(barcode_id:11)\n(house_keeping_gene:ACTB)\n(mixed_ratio:27.54)\n(from:Extract|RIKEN6_PMA_96h.RNA)\n(to:Sample|RIKEN6_PMA.CAGE) " [shape=none,URL="",label="454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:TTGCA)\n(barcode_id:11)\n(house_keeping_gene:ACTB)\n(mixed_ratio:27.54)"] ; 
 " TAG_EXTRACTION\n(barcode:TTGCA)\n(from:Data|I02_454_RAW_DATA)\n(to:Data|i02_tag_counts) " [shape=none,URL="",label="TAG_EXTRACTION\n(barcode:TTGCA)"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_96h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_96h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_4h)\n(to:Extract|RIKEN3_PMA_4h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " THP1_CULTIVATE\n(from:Source|F4-THP1)\n(to:Sample|RIKEN3) " [shape=none,URL="",label="THP1_CULTIVATE"] ; 
 " THP1_CULTIVATE\n(from:Source|F4-THP1)\n(to:Sample|RIKEN6) " [shape=none,URL="",label="THP1_CULTIVATE"] ; 
 " THP1_CULTIVATE\n(from:Source|F4-THP1)\n(to:Sample|RIKEN1) " [shape=none,URL="",label="THP1_CULTIVATE"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_6h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_1h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [shape=none,URL="",label="TF-qRT-PCR-NORMALIZE"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_24h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_1h)\n(to:Extract|RIKEN6_PMA_1h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " LEVEL123_CLUSTERING\n(from:File|h93_mapping)\n(to:File|level_123_clusters) " [shape=none,URL="",label="LEVEL123_CLUSTERING"] ; 
 " TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_12h.RNA)\n(to:Data|RIKEN3_PMA_12h.RNA.TFqRTPCR) " [shape=none,URL="",label="TF-qRT-PCR"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_12h.RNA)\n(to:Hybridization|RIKEN3_PMA_12h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CTAAC)\n(barcode_id:9)\n(house_keeping_gene:ACTB)\n(mixed_ratio:23.6)\n(from:Extract|RIKEN3_PMA_12h.RNA)\n(to:Sample|RIKEN3_PMA.CAGE) " [shape=none,URL="",label="454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CTAAC)\n(barcode_id:9)\n(house_keeping_gene:ACTB)\n(mixed_ratio:23.6)"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_72h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_72h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_6h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_6h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_72h)\n(to:Extract|RIKEN3_PMA_72h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_72h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_24h)\n(to:Extract|RIKEN3_PMA_24h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_24h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_24h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_6h.RNA)\n(to:Hybridization|RIKEN3_PMA_6h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_6h.RNA)\n(to:Data|RIKEN3_PMA_6h.RNA.TFqRTPCR) " [shape=none,URL="",label="TF-qRT-PCR"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_4h)\n(to:Extract|RIKEN6_PMA_4h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_1h.RNA)\n(to:Hybridization|RIKEN6_PMA_1h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CATTG)\n(barcode_id:7)\n(house_keeping_gene:ACTB)\n(mixed_ratio:15.93)\n(from:Extract|RIKEN6_PMA_1h.RNA)\n(to:Sample|RIKEN6_PMA.CAGE) " [shape=none,URL="",label="454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CATTG)\n(barcode_id:7)\n(house_keeping_gene:ACTB)\n(mixed_ratio:15.93)"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_96h)\n(to:Extract|RIKEN1_PMA_96h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_2h.RNA)\n(to:Data|RIKEN3_PMA_2h.RNA.TFqRTPCR) " [shape=none,URL="",label="TF-qRT-PCR"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_2h.RNA)\n(to:Hybridization|RIKEN3_PMA_2h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:GTTAC)\n(barcode_id:6)\n(house_keeping_gene:ACTB)\n(mixed_ratio:33.700000000000003)\n(from:Extract|RIKEN1_PMA_0h.RNA)\n(to:Sample|RIKEN1_PMA.CAGE) " [shape=none,URL="",label="454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:GTTAC)\n(barcode_id:6)\n(house_keeping_gene:ACTB)\n(mixed_ratio:33.700000000000003)"] ; 
 " TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_0h.RNA)\n(to:Data|RIKEN1_PMA_0h.RNA.TFqRTPCR) " [shape=none,URL="",label="TF-qRT-PCR"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_0h.RNA)\n(to:Hybridization|RIKEN1_PMA_0h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_48h)\n(to:Extract|RIKEN1_PMA_48h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_96h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CTAAC)\n(barcode_id:9)\n(house_keeping_gene:ACTB)\n(mixed_ratio:36.700000000000003)\n(from:Extract|RIKEN1_PMA_12h.RNA)\n(to:Sample|RIKEN1_PMA.CAGE) " [shape=none,URL="",label="454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CTAAC)\n(barcode_id:9)\n(house_keeping_gene:ACTB)\n(mixed_ratio:36.700000000000003)"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_12h.RNA)\n(to:Hybridization|RIKEN1_PMA_12h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_12h.RNA)\n(to:Data|RIKEN1_PMA_12h.RNA.TFqRTPCR) " [shape=none,URL="",label="TF-qRT-PCR"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_1h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_1h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " PMA_STIMULATION\n(hour:24)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_24h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:24)"] ; 
 " PMA_STIMULATION\n(hour:1)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_1h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:1)"] ; 
 " PMA_STIMULATION\n(hour:12)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_12h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:12)"] ; 
 " PMA_STIMULATION\n(hour:0)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_0h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:0)"] ; 
 " PMA_STIMULATION\n(hour:96)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_96h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:96)"] ; 
 " PMA_STIMULATION\n(hour:6)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_6h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:6)"] ; 
 " PMA_STIMULATION\n(hour:72)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_72h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:72)"] ; 
 " PMA_STIMULATION\n(hour:4)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_4h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:4)"] ; 
 " PMA_STIMULATION\n(hour:48)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_48h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:48)"] ; 
 " PMA_STIMULATION\n(hour:2)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_2h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:2)"] ; 
 " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_0h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [shape=none,URL="",label="TF-qRT-PCR-NORMALIZE"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_24h)\n(to:Extract|RIKEN6_PMA_24h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_0h)\n(to:Extract|RIKEN1_PMA_0h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_72h)\n(to:Extract|RIKEN6_PMA_72h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_0h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [shape=none,URL="",label="TF-qRT-PCR-NORMALIZE"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_2h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_2h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_0h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_0h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " PMA_STIMULATION\n(hour:24)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_24h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:24)"] ; 
 " PMA_STIMULATION\n(hour:1)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_1h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:1)"] ; 
 " PMA_STIMULATION\n(hour:12)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_12h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:12)"] ; 
 " PMA_STIMULATION\n(hour:0)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_0h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:0)"] ; 
 " PMA_STIMULATION\n(hour:96)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_96h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:96)"] ; 
 " PMA_STIMULATION\n(hour:6)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_6h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:6)"] ; 
 " PMA_STIMULATION\n(hour:72)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_72h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:72)"] ; 
 " PMA_STIMULATION\n(hour:4)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_4h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:4)"] ; 
 " PMA_STIMULATION\n(hour:48)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_48h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:48)"] ; 
 " PMA_STIMULATION\n(hour:2)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_2h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:2)"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_96h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_96h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_72h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [shape=none,URL="",label="TF-qRT-PCR-NORMALIZE"] ; 
 " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_6h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [shape=none,URL="",label="TF-qRT-PCR-NORMALIZE"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_0h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_6h.RNA)\n(to:Data|RIKEN1_PMA_6h.RNA.TFqRTPCR) " [shape=none,URL="",label="TF-qRT-PCR"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_6h.RNA)\n(to:Hybridization|RIKEN1_PMA_6h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_48h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_48h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_6h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [shape=none,URL="",label="TF-qRT-PCR-NORMALIZE"] ; 
 " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_1h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [shape=none,URL="",label="TF-qRT-PCR-NORMALIZE"] ; 
 " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_4h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [shape=none,URL="",label="TF-qRT-PCR-NORMALIZE"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_4h.RNA)\n(to:Hybridization|RIKEN6_PMA_4h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CGTAA)\n(barcode_id:8)\n(house_keeping_gene:ACTB)\n(mixed_ratio:49)\n(from:Extract|RIKEN6_PMA_4h.RNA)\n(to:Sample|RIKEN6_PMA.CAGE) " [shape=none,URL="",label="454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CGTAA)\n(barcode_id:8)\n(house_keeping_gene:ACTB)\n(mixed_ratio:49)"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_24h.RNA)\n(to:Hybridization|RIKEN3_PMA_24h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_24h.RNA)\n(to:Data|RIKEN3_PMA_24h.RNA.TFqRTPCR) " [shape=none,URL="",label="TF-qRT-PCR"] ; 
 " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:TTAGT)\n(barcode_id:10)\n(house_keeping_gene:ACTB)\n(mixed_ratio:32.6)\n(from:Extract|RIKEN3_PMA_24h.RNA)\n(to:Sample|RIKEN3_PMA.CAGE) " [shape=none,URL="",label="454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:TTAGT)\n(barcode_id:10)\n(house_keeping_gene:ACTB)\n(mixed_ratio:32.6)"] ; 
 " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_4h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [shape=none,URL="",label="TF-qRT-PCR-NORMALIZE"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_1h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_72h.RNA)\n(to:Hybridization|RIKEN3_PMA_72h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_72h.RNA)\n(to:Data|RIKEN3_PMA_72h.RNA.TFqRTPCR) " [shape=none,URL="",label="TF-qRT-PCR"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_12h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " PMA_STIMULATION\n(hour:72)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_72h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:72)"] ; 
 " PMA_STIMULATION\n(hour:48)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_48h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:48)"] ; 
 " PMA_STIMULATION\n(hour:6)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_6h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:6)"] ; 
 " PMA_STIMULATION\n(hour:24)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_24h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:24)"] ; 
 " PMA_STIMULATION\n(hour:4)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_4h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:4)"] ; 
 " PMA_STIMULATION\n(hour:12)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_12h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:12)"] ; 
 " PMA_STIMULATION\n(hour:2)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_2h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:2)"] ; 
 " PMA_STIMULATION\n(hour:1)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_1h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:1)"] ; 
 " PMA_STIMULATION\n(hour:0)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_0h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:0)"] ; 
 " PMA_STIMULATION\n(hour:96)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_96h) " [shape=none,URL="",label="PMA_STIMULATION\n(hour:96)"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_6h)\n(to:Extract|RIKEN1_PMA_6h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_12h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [shape=none,URL="",label="TF-qRT-PCR-NORMALIZE"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_48h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_12h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_12h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_4h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_24h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_2h)\n(to:Extract|RIKEN3_PMA_2h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_0h.RNA)\n(to:Hybridization|RIKEN6_PMA_0h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:GTTAC)\n(barcode_id:6)\n(house_keeping_gene:ACTB)\n(mixed_ratio:11.96)\n(from:Extract|RIKEN6_PMA_0h.RNA)\n(to:Sample|RIKEN6_PMA.CAGE) " [shape=none,URL="",label="454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:GTTAC)\n(barcode_id:6)\n(house_keeping_gene:ACTB)\n(mixed_ratio:11.96)"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_12h.RNA)\n(to:Hybridization|RIKEN6_PMA_12h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CTAAC)\n(barcode_id:9)\n(house_keeping_gene:ACTB)\n(mixed_ratio:21.32)\n(from:Extract|RIKEN6_PMA_12h.RNA)\n(to:Sample|RIKEN6_PMA.CAGE) " [shape=none,URL="",label="454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CTAAC)\n(barcode_id:9)\n(house_keeping_gene:ACTB)\n(mixed_ratio:21.32)"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_12h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_1h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_1h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:TTAGT)\n(barcode_id:10)\n(house_keeping_gene:ACTB)\n(mixed_ratio:32.700000000000003)\n(from:Extract|RIKEN1_PMA_24h.RNA)\n(to:Sample|RIKEN1_PMA.CAGE) " [shape=none,URL="",label="454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:TTAGT)\n(barcode_id:10)\n(house_keeping_gene:ACTB)\n(mixed_ratio:32.700000000000003)"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_24h.RNA)\n(to:Hybridization|RIKEN1_PMA_24h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_24h.RNA)\n(to:Data|RIKEN1_PMA_24h.RNA.TFqRTPCR) " [shape=none,URL="",label="TF-qRT-PCR"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_2h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_4h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_4h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_72h.RNA)\n(to:Data|RIKEN1_PMA_72h.RNA.TFqRTPCR) " [shape=none,URL="",label="TF-qRT-PCR"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_72h.RNA)\n(to:Hybridization|RIKEN1_PMA_72h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_2h)\n(to:Extract|RIKEN6_PMA_2h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_6h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_6h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_12h)\n(to:Extract|RIKEN1_PMA_12h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_6h.RNA)\n(to:Hybridization|RIKEN6_PMA_6h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_48h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_6h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_6h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_24h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_24h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " LEVEL123_CLUSTERING\n(from:File|i02_mapping)\n(to:File|level_123_clusters) " [shape=none,URL="",label="LEVEL123_CLUSTERING"] ; 
 " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_72h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [shape=none,URL="",label="TF-qRT-PCR-NORMALIZE"] ; 
 " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_48h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [shape=none,URL="",label="TF-qRT-PCR-NORMALIZE"] ; 
 " 454seq\n(from:Sample|H93)\n(to:Data|H93_454_RAW_DATA) " [shape=none,URL="",label="454seq"] ; 
 " LEVEL123_CLUSTERING\n(from:File|i03_mapping)\n(to:File|level_123_clusters) " [shape=none,URL="",label="LEVEL123_CLUSTERING"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_6h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_2h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_24h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_24h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_1h)\n(to:Extract|RIKEN1_PMA_1h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_0h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_0h.RNA_Hyb.Scan) " [shape=none,URL="",label="ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS"] ; 
 " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_72h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [shape=none,URL="",label="ILLUMINA_QUANTILE_NORMALIZATION"] ; 
 " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_24h.RNA)\n(to:Hybridization|RIKEN6_PMA_24h.RNA_Hyb) " [shape=none,URL="",label="ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION"] ; 
 " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:TTAGT)\n(barcode_id:10)\n(house_keeping_gene:ACTB)\n(mixed_ratio:17.98)\n(from:Extract|RIKEN6_PMA_24h.RNA)\n(to:Sample|RIKEN6_PMA.CAGE) " [shape=none,URL="",label="454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:TTAGT)\n(barcode_id:10)\n(house_keeping_gene:ACTB)\n(mixed_ratio:17.98)"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_96h)\n(to:Extract|RIKEN3_PMA_96h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
 " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_48h)\n(to:Extract|RIKEN3_PMA_48h.RNA) " [shape=none,URL="",label="TRIZOL_RNA_EXTRACTION"] ; 
"Hybridization|RIKEN6_PMA_72h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_72h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_72h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_72h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_72h.RNA_Hyb.Scan) " -> "Data|RIKEN6_PMA_72h.RNA_Hyb.Scan" ;
"Extract|RIKEN6_PMA_72h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_72h.RNA)\n(to:Hybridization|RIKEN6_PMA_72h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_72h.RNA)\n(to:Hybridization|RIKEN6_PMA_72h.RNA_Hyb) " -> "Hybridization|RIKEN6_PMA_72h.RNA_Hyb" ;
"Hybridization|RIKEN1_PMA_2h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_2h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_2h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_2h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_2h.RNA_Hyb.Scan) " -> "Data|RIKEN1_PMA_2h.RNA_Hyb.Scan" ;
"Data|RIKEN3_PMA_96h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_96h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_96h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Data|RIKEN1_PMA_0h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_0h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_0h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Sample|RIKEN1_PMA_4h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_4h)\n(to:Extract|RIKEN1_PMA_4h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_4h)\n(to:Extract|RIKEN1_PMA_4h.RNA) " -> "Extract|RIKEN1_PMA_4h.RNA" ;
"Hybridization|RIKEN6_PMA_48h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_48h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_48h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_48h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_48h.RNA_Hyb.Scan) " -> "Data|RIKEN6_PMA_48h.RNA_Hyb.Scan" ;
"Data|RIKEN6_PMA_12h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_12h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_12h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Data|RIKEN3_PMA_0h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_0h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_0h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Sample|RIKEN3_PMA_0h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_0h)\n(to:Extract|RIKEN3_PMA_0h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_0h)\n(to:Extract|RIKEN3_PMA_0h.RNA) " -> "Extract|RIKEN3_PMA_0h.RNA" ;
"Data|RIKEN1_PMA_1h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_1h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_1h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Sample|RIKEN1_PMA_72h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_72h)\n(to:Extract|RIKEN1_PMA_72h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_72h)\n(to:Extract|RIKEN1_PMA_72h.RNA) " -> "Extract|RIKEN1_PMA_72h.RNA" ;
"Sample|RIKEN1_PMA_24h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_24h)\n(to:Extract|RIKEN1_PMA_24h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_24h)\n(to:Extract|RIKEN1_PMA_24h.RNA) " -> "Extract|RIKEN1_PMA_24h.RNA" ;
"Data|RIKEN1_PMA_72h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_72h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_72h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Sample|RIKEN6_PMA_48h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_48h)\n(to:Extract|RIKEN6_PMA_48h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_48h)\n(to:Extract|RIKEN6_PMA_48h.RNA) " -> "Extract|RIKEN6_PMA_48h.RNA" ;
"Data|RIKEN1_PMA_4h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_4h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_4h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Data|RIKEN3_PMA_1h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_1h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_1h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Sample|RIKEN6_PMA_96h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_96h)\n(to:Extract|RIKEN6_PMA_96h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_96h)\n(to:Extract|RIKEN6_PMA_96h.RNA) " -> "Extract|RIKEN6_PMA_96h.RNA" ;
"Data|RIKEN1_PMA_96h.RNA.TFqRTPCR" -> " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_96h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [arrowhead = none] ;
" TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_96h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " -> "Data|qrtpcr_pma_timecourse" ;
"Sample|RIKEN6_PMA_0h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_0h)\n(to:Extract|RIKEN6_PMA_0h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_0h)\n(to:Extract|RIKEN6_PMA_0h.RNA) " -> "Extract|RIKEN6_PMA_0h.RNA" ;
"Data|RIKEN3_PMA_4h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_4h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_4h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Extract|RIKEN3_PMA_48h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_48h.RNA)\n(to:Hybridization|RIKEN3_PMA_48h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_48h.RNA)\n(to:Hybridization|RIKEN3_PMA_48h.RNA_Hyb) " -> "Hybridization|RIKEN3_PMA_48h.RNA_Hyb" ;
"Extract|RIKEN3_PMA_48h.RNA" -> " TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_48h.RNA)\n(to:Data|RIKEN3_PMA_48h.RNA.TFqRTPCR) " [arrowhead = none] ;
" TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_48h.RNA)\n(to:Data|RIKEN3_PMA_48h.RNA.TFqRTPCR) " -> "Data|RIKEN3_PMA_48h.RNA.TFqRTPCR" ;
"Extract|RIKEN3_PMA_4h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_4h.RNA)\n(to:Hybridization|RIKEN3_PMA_4h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_4h.RNA)\n(to:Hybridization|RIKEN3_PMA_4h.RNA_Hyb) " -> "Hybridization|RIKEN3_PMA_4h.RNA_Hyb" ;
"Extract|RIKEN3_PMA_4h.RNA" -> " TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_4h.RNA)\n(to:Data|RIKEN3_PMA_4h.RNA.TFqRTPCR) " [arrowhead = none] ;
" TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_4h.RNA)\n(to:Data|RIKEN3_PMA_4h.RNA.TFqRTPCR) " -> "Data|RIKEN3_PMA_4h.RNA.TFqRTPCR" ;
"Extract|RIKEN3_PMA_4h.RNA" -> " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CGTAA)\n(barcode_id:8)\n(house_keeping_gene:ACTB)\n(mixed_ratio:49)\n(from:Extract|RIKEN3_PMA_4h.RNA)\n(to:Sample|RIKEN3_PMA.CAGE) " [arrowhead = none] ;
" 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CGTAA)\n(barcode_id:8)\n(house_keeping_gene:ACTB)\n(mixed_ratio:49)\n(from:Extract|RIKEN3_PMA_4h.RNA)\n(to:Sample|RIKEN3_PMA.CAGE) " -> "Sample|RIKEN3_PMA.CAGE" ;
"Extract|RIKEN1_PMA_2h.RNA" -> " TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_2h.RNA)\n(to:Data|RIKEN1_PMA_2h.RNA.TFqRTPCR) " [arrowhead = none] ;
" TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_2h.RNA)\n(to:Data|RIKEN1_PMA_2h.RNA.TFqRTPCR) " -> "Data|RIKEN1_PMA_2h.RNA.TFqRTPCR" ;
"Extract|RIKEN1_PMA_2h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_2h.RNA)\n(to:Hybridization|RIKEN1_PMA_2h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_2h.RNA)\n(to:Hybridization|RIKEN1_PMA_2h.RNA_Hyb) " -> "Hybridization|RIKEN1_PMA_2h.RNA_Hyb" ;
"Sample|RIKEN3_PMA_6h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_6h)\n(to:Extract|RIKEN3_PMA_6h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_6h)\n(to:Extract|RIKEN3_PMA_6h.RNA) " -> "Extract|RIKEN3_PMA_6h.RNA" ;
"Extract|RIKEN3_PMA_96h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_96h.RNA)\n(to:Hybridization|RIKEN3_PMA_96h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_96h.RNA)\n(to:Hybridization|RIKEN3_PMA_96h.RNA_Hyb) " -> "Hybridization|RIKEN3_PMA_96h.RNA_Hyb" ;
"Extract|RIKEN3_PMA_96h.RNA" -> " TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_96h.RNA)\n(to:Data|RIKEN3_PMA_96h.RNA.TFqRTPCR) " [arrowhead = none] ;
" TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_96h.RNA)\n(to:Data|RIKEN3_PMA_96h.RNA.TFqRTPCR) " -> "Data|RIKEN3_PMA_96h.RNA.TFqRTPCR" ;
"Extract|RIKEN3_PMA_96h.RNA" -> " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:TTGCA)\n(barcode_id:11)\n(house_keeping_gene:ACTB)\n(mixed_ratio:46.6)\n(from:Extract|RIKEN3_PMA_96h.RNA)\n(to:Sample|RIKEN3_PMA.CAGE) " [arrowhead = none] ;
" 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:TTGCA)\n(barcode_id:11)\n(house_keeping_gene:ACTB)\n(mixed_ratio:46.6)\n(from:Extract|RIKEN3_PMA_96h.RNA)\n(to:Sample|RIKEN3_PMA.CAGE) " -> "Sample|RIKEN3_PMA.CAGE" ;
"Data|RIKEN3_PMA_96h.RNA.TFqRTPCR" -> " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_96h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [arrowhead = none] ;
" TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_96h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " -> "Data|qrtpcr_pma_timecourse" ;
"Data|RIKEN1_PMA_24h.RNA.TFqRTPCR" -> " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_24h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [arrowhead = none] ;
" TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_24h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " -> "Data|qrtpcr_pma_timecourse" ;
"Hybridization|RIKEN6_PMA_96h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_96h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_96h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_96h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_96h.RNA_Hyb.Scan) " -> "Data|RIKEN6_PMA_96h.RNA_Hyb.Scan" ;
"Extract|RIKEN3_PMA_1h.RNA" -> " TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_1h.RNA)\n(to:Data|RIKEN3_PMA_1h.RNA.TFqRTPCR) " [arrowhead = none] ;
" TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_1h.RNA)\n(to:Data|RIKEN3_PMA_1h.RNA.TFqRTPCR) " -> "Data|RIKEN3_PMA_1h.RNA.TFqRTPCR" ;
"Extract|RIKEN3_PMA_1h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_1h.RNA)\n(to:Hybridization|RIKEN3_PMA_1h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_1h.RNA)\n(to:Hybridization|RIKEN3_PMA_1h.RNA_Hyb) " -> "Hybridization|RIKEN3_PMA_1h.RNA_Hyb" ;
"Extract|RIKEN3_PMA_1h.RNA" -> " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CATTG)\n(barcode_id:7)\n(house_keeping_gene:ACTB)\n(mixed_ratio:33.1)\n(from:Extract|RIKEN3_PMA_1h.RNA)\n(to:Sample|RIKEN3_PMA.CAGE) " [arrowhead = none] ;
" 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CATTG)\n(barcode_id:7)\n(house_keeping_gene:ACTB)\n(mixed_ratio:33.1)\n(from:Extract|RIKEN3_PMA_1h.RNA)\n(to:Sample|RIKEN3_PMA.CAGE) " -> "Sample|RIKEN3_PMA.CAGE" ;
"Hybridization|RIKEN1_PMA_12h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_12h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_12h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_12h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_12h.RNA_Hyb.Scan) " -> "Data|RIKEN1_PMA_12h.RNA_Hyb.Scan" ;
"Data|RIKEN3_PMA_12h.RNA.TFqRTPCR" -> " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_12h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [arrowhead = none] ;
" TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_12h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " -> "Data|qrtpcr_pma_timecourse" ;
"Hybridization|RIKEN3_PMA_4h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_4h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_4h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_4h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_4h.RNA_Hyb.Scan) " -> "Data|RIKEN3_PMA_4h.RNA_Hyb.Scan" ;
"Data|RIKEN3_PMA_24h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_24h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_24h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Sample|RIKEN1_PMA.CAGE" -> " 454CAGE_step2\n(number_of_1stPCR_tubes:80)\n(number_of_1stPCR_cycles:20)\n(number_of_2ndPCR_tubes:100)\n(number_of_2ndPCR_cycles:8)\n(amount_of_tags_for_XmaJI_cut:84)\n(amount_of_ligated_CAGE_tags:1000)\n(from:Sample|RIKEN1_PMA.CAGE)\n(to:Sample|H93) " [arrowhead = none] ;
" 454CAGE_step2\n(number_of_1stPCR_tubes:80)\n(number_of_1stPCR_cycles:20)\n(number_of_2ndPCR_tubes:100)\n(number_of_2ndPCR_cycles:8)\n(amount_of_tags_for_XmaJI_cut:84)\n(amount_of_ligated_CAGE_tags:1000)\n(from:Sample|RIKEN1_PMA.CAGE)\n(to:Sample|H93) " -> "Sample|H93" ;
"Data|RIKEN3_PMA_24h.RNA.TFqRTPCR" -> " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_24h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [arrowhead = none] ;
" TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_24h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " -> "Data|qrtpcr_pma_timecourse" ;
"Sample|RIKEN6_PMA_6h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_6h)\n(to:Extract|RIKEN6_PMA_6h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_6h)\n(to:Extract|RIKEN6_PMA_6h.RNA) " -> "Extract|RIKEN6_PMA_6h.RNA" ;
"Extract|RIKEN1_PMA_48h.RNA" -> " TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_48h.RNA)\n(to:Data|RIKEN1_PMA_48h.RNA.TFqRTPCR) " [arrowhead = none] ;
" TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_48h.RNA)\n(to:Data|RIKEN1_PMA_48h.RNA.TFqRTPCR) " -> "Data|RIKEN1_PMA_48h.RNA.TFqRTPCR" ;
"Extract|RIKEN1_PMA_48h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_48h.RNA)\n(to:Hybridization|RIKEN1_PMA_48h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_48h.RNA)\n(to:Hybridization|RIKEN1_PMA_48h.RNA_Hyb) " -> "Hybridization|RIKEN1_PMA_48h.RNA_Hyb" ;
"Data|RIKEN6_PMA_96h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_96h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_96h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Hybridization|RIKEN6_PMA_1h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_1h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_1h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_1h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_1h.RNA_Hyb.Scan) " -> "Data|RIKEN6_PMA_1h.RNA_Hyb.Scan" ;
"Data|RIKEN1_PMA_6h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_6h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_6h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Data|H93_454_RAW_DATA" -> " TAG_EXTRACTION\n(barcode:TTGCA)\n(from:Data|H93_454_RAW_DATA)\n(to:Data|h93_tag_counts) " [arrowhead = none] ;
" TAG_EXTRACTION\n(barcode:TTGCA)\n(from:Data|H93_454_RAW_DATA)\n(to:Data|h93_tag_counts) " -> "Data|h93_tag_counts" ;
"Sample|RIKEN3_PMA_12h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_12h)\n(to:Extract|RIKEN3_PMA_12h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_12h)\n(to:Extract|RIKEN3_PMA_12h.RNA) " -> "Extract|RIKEN3_PMA_12h.RNA" ;
"Sample|I02" -> " 454seq\n(from:Sample|I02)\n(to:Data|I02_454_RAW_DATA) " [arrowhead = none] ;
" 454seq\n(from:Sample|I02)\n(to:Data|I02_454_RAW_DATA) " -> "Data|I02_454_RAW_DATA" ;
"Data|h93_tag_counts" -> " MAPPING\n(genome_assemblies:hg18)\n(from:Data|h93_tag_counts)\n(to:File|h93_mapping) " [arrowhead = none] ;
" MAPPING\n(genome_assemblies:hg18)\n(from:Data|h93_tag_counts)\n(to:File|h93_mapping) " -> "File|h93_mapping" ;
"Sample|RIKEN3_PMA.CAGE" -> " 454CAGE_step2\n(number_of_1stPCR_tubes:40)\n(number_of_1stPCR_cycles:20)\n(number_of_2ndPCR_tubes:47)\n(number_of_2ndPCR_cycles:8)\n(amount_of_tags_for_XmaJI_cut:11.92)\n(amount_of_ligated_CAGE_tags:500)\n(from:Sample|RIKEN3_PMA.CAGE)\n(to:Sample|I02) " [arrowhead = none] ;
" 454CAGE_step2\n(number_of_1stPCR_tubes:40)\n(number_of_1stPCR_cycles:20)\n(number_of_2ndPCR_tubes:47)\n(number_of_2ndPCR_cycles:8)\n(amount_of_tags_for_XmaJI_cut:11.92)\n(amount_of_ligated_CAGE_tags:500)\n(from:Sample|RIKEN3_PMA.CAGE)\n(to:Sample|I02) " -> "Sample|I02" ;
"Extract|RIKEN1_PMA_96h.RNA" -> " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:TTGCA)\n(barcode_id:11)\n(house_keeping_gene:ACTB)\n(mixed_ratio:41)\n(from:Extract|RIKEN1_PMA_96h.RNA)\n(to:Sample|RIKEN1_PMA.CAGE) " [arrowhead = none] ;
" 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:TTGCA)\n(barcode_id:11)\n(house_keeping_gene:ACTB)\n(mixed_ratio:41)\n(from:Extract|RIKEN1_PMA_96h.RNA)\n(to:Sample|RIKEN1_PMA.CAGE) " -> "Sample|RIKEN1_PMA.CAGE" ;
"Extract|RIKEN1_PMA_96h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_96h.RNA)\n(to:Hybridization|RIKEN1_PMA_96h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_96h.RNA)\n(to:Hybridization|RIKEN1_PMA_96h.RNA_Hyb) " -> "Hybridization|RIKEN1_PMA_96h.RNA_Hyb" ;
"Extract|RIKEN1_PMA_96h.RNA" -> " TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_96h.RNA)\n(to:Data|RIKEN1_PMA_96h.RNA.TFqRTPCR) " [arrowhead = none] ;
" TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_96h.RNA)\n(to:Data|RIKEN1_PMA_96h.RNA.TFqRTPCR) " -> "Data|RIKEN1_PMA_96h.RNA.TFqRTPCR" ;
"Hybridization|RIKEN6_PMA_4h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_4h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_4h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_4h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_4h.RNA_Hyb.Scan) " -> "Data|RIKEN6_PMA_4h.RNA_Hyb.Scan" ;
"Hybridization|RIKEN1_PMA_48h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_48h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_48h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_48h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_48h.RNA_Hyb.Scan) " -> "Data|RIKEN1_PMA_48h.RNA_Hyb.Scan" ;
"Data|i03_tag_counts" -> " MAPPING\n(genome_assemblies:hg18)\n(from:Data|i03_tag_counts)\n(to:File|i03_mapping) " [arrowhead = none] ;
" MAPPING\n(genome_assemblies:hg18)\n(from:Data|i03_tag_counts)\n(to:File|i03_mapping) " -> "File|i03_mapping" ;
"Hybridization|RIKEN1_PMA_72h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_72h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_72h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_72h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_72h.RNA_Hyb.Scan) " -> "Data|RIKEN1_PMA_72h.RNA_Hyb.Scan" ;
"Data|I03_454_RAW_DATA" -> " TAG_EXTRACTION\n(barcode:TTGCA)\n(from:Data|I03_454_RAW_DATA)\n(to:Data|i03_tag_counts) " [arrowhead = none] ;
" TAG_EXTRACTION\n(barcode:TTGCA)\n(from:Data|I03_454_RAW_DATA)\n(to:Data|i03_tag_counts) " -> "Data|i03_tag_counts" ;
"Sample|I03" -> " 454seq\n(from:Sample|I03)\n(to:Data|I03_454_RAW_DATA) " [arrowhead = none] ;
" 454seq\n(from:Sample|I03)\n(to:Data|I03_454_RAW_DATA) " -> "Data|I03_454_RAW_DATA" ;
"Extract|RIKEN1_PMA_4h.RNA" -> " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CGTAA)\n(barcode_id:8)\n(house_keeping_gene:ACTB)\n(mixed_ratio:19.399999999999999)\n(from:Extract|RIKEN1_PMA_4h.RNA)\n(to:Sample|RIKEN1_PMA.CAGE) " [arrowhead = none] ;
" 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CGTAA)\n(barcode_id:8)\n(house_keeping_gene:ACTB)\n(mixed_ratio:19.399999999999999)\n(from:Extract|RIKEN1_PMA_4h.RNA)\n(to:Sample|RIKEN1_PMA.CAGE) " -> "Sample|RIKEN1_PMA.CAGE" ;
"Extract|RIKEN1_PMA_4h.RNA" -> " TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_4h.RNA)\n(to:Data|RIKEN1_PMA_4h.RNA.TFqRTPCR) " [arrowhead = none] ;
" TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_4h.RNA)\n(to:Data|RIKEN1_PMA_4h.RNA.TFqRTPCR) " -> "Data|RIKEN1_PMA_4h.RNA.TFqRTPCR" ;
"Extract|RIKEN1_PMA_4h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_4h.RNA)\n(to:Hybridization|RIKEN1_PMA_4h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_4h.RNA)\n(to:Hybridization|RIKEN1_PMA_4h.RNA_Hyb) " -> "Hybridization|RIKEN1_PMA_4h.RNA_Hyb" ;
"Sample|RIKEN6_PMA.CAGE" -> " 454CAGE_step2\n(number_of_1stPCR_tubes:100)\n(number_of_1stPCR_cycles:20)\n(number_of_2ndPCR_tubes:97)\n(number_of_2ndPCR_cycles:8)\n(amount_of_tags_for_XmaJI_cut:24.42)\n(amount_of_ligated_CAGE_tags:500)\n(from:Sample|RIKEN6_PMA.CAGE)\n(to:Sample|I03) " [arrowhead = none] ;
" 454CAGE_step2\n(number_of_1stPCR_tubes:100)\n(number_of_1stPCR_cycles:20)\n(number_of_2ndPCR_tubes:97)\n(number_of_2ndPCR_cycles:8)\n(amount_of_tags_for_XmaJI_cut:24.42)\n(amount_of_ligated_CAGE_tags:500)\n(from:Sample|RIKEN6_PMA.CAGE)\n(to:Sample|I03) " -> "Sample|I03" ;
"Extract|RIKEN6_PMA_2h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_2h.RNA)\n(to:Hybridization|RIKEN6_PMA_2h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_2h.RNA)\n(to:Hybridization|RIKEN6_PMA_2h.RNA_Hyb) " -> "Hybridization|RIKEN6_PMA_2h.RNA_Hyb" ;
"Sample|RIKEN1_PMA_2h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_2h)\n(to:Extract|RIKEN1_PMA_2h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_2h)\n(to:Extract|RIKEN1_PMA_2h.RNA) " -> "Extract|RIKEN1_PMA_2h.RNA" ;
"Data|RIKEN3_PMA_48h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_48h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_48h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Hybridization|RIKEN3_PMA_0h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_0h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_0h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_0h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_0h.RNA_Hyb.Scan) " -> "Data|RIKEN3_PMA_0h.RNA_Hyb.Scan" ;
"Extract|RIKEN1_PMA_1h.RNA" -> " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CATTG)\n(barcode_id:7)\n(house_keeping_gene:ACTB)\n(mixed_ratio:39.200000000000003)\n(from:Extract|RIKEN1_PMA_1h.RNA)\n(to:Sample|RIKEN1_PMA.CAGE) " [arrowhead = none] ;
" 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CATTG)\n(barcode_id:7)\n(house_keeping_gene:ACTB)\n(mixed_ratio:39.200000000000003)\n(from:Extract|RIKEN1_PMA_1h.RNA)\n(to:Sample|RIKEN1_PMA.CAGE) " -> "Sample|RIKEN1_PMA.CAGE" ;
"Extract|RIKEN1_PMA_1h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_1h.RNA)\n(to:Hybridization|RIKEN1_PMA_1h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_1h.RNA)\n(to:Hybridization|RIKEN1_PMA_1h.RNA_Hyb) " -> "Hybridization|RIKEN1_PMA_1h.RNA_Hyb" ;
"Extract|RIKEN1_PMA_1h.RNA" -> " TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_1h.RNA)\n(to:Data|RIKEN1_PMA_1h.RNA.TFqRTPCR) " [arrowhead = none] ;
" TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_1h.RNA)\n(to:Data|RIKEN1_PMA_1h.RNA.TFqRTPCR) " -> "Data|RIKEN1_PMA_1h.RNA.TFqRTPCR" ;
"Data|RIKEN1_PMA_2h.RNA.TFqRTPCR" -> " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_2h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [arrowhead = none] ;
" TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_2h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " -> "Data|qrtpcr_pma_timecourse" ;
"Sample|RIKEN6_PMA_12h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_12h)\n(to:Extract|RIKEN6_PMA_12h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_12h)\n(to:Extract|RIKEN6_PMA_12h.RNA) " -> "Extract|RIKEN6_PMA_12h.RNA" ;
"Data|i02_tag_counts" -> " MAPPING\n(genome_assemblies:hg18)\n(from:Data|i02_tag_counts)\n(to:File|i02_mapping) " [arrowhead = none] ;
" MAPPING\n(genome_assemblies:hg18)\n(from:Data|i02_tag_counts)\n(to:File|i02_mapping) " -> "File|i02_mapping" ;
"Data|RIKEN3_PMA_2h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_2h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_2h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Data|RIKEN3_PMA_2h.RNA.TFqRTPCR" -> " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_2h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [arrowhead = none] ;
" TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_2h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " -> "Data|qrtpcr_pma_timecourse" ;
"Hybridization|RIKEN3_PMA_2h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_2h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_2h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_2h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_2h.RNA_Hyb.Scan) " -> "Data|RIKEN3_PMA_2h.RNA_Hyb.Scan" ;
"Extract|RIKEN3_PMA_0h.RNA" -> " TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_0h.RNA)\n(to:Data|RIKEN3_PMA_0h.RNA.TFqRTPCR) " [arrowhead = none] ;
" TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_0h.RNA)\n(to:Data|RIKEN3_PMA_0h.RNA.TFqRTPCR) " -> "Data|RIKEN3_PMA_0h.RNA.TFqRTPCR" ;
"Extract|RIKEN3_PMA_0h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_0h.RNA)\n(to:Hybridization|RIKEN3_PMA_0h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_0h.RNA)\n(to:Hybridization|RIKEN3_PMA_0h.RNA_Hyb) " -> "Hybridization|RIKEN3_PMA_0h.RNA_Hyb" ;
"Extract|RIKEN3_PMA_0h.RNA" -> " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:GTTAC)\n(barcode_id:6)\n(house_keeping_gene:ACTB)\n(mixed_ratio:31.9)\n(from:Extract|RIKEN3_PMA_0h.RNA)\n(to:Sample|RIKEN3_PMA.CAGE) " [arrowhead = none] ;
" 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:GTTAC)\n(barcode_id:6)\n(house_keeping_gene:ACTB)\n(mixed_ratio:31.9)\n(from:Extract|RIKEN3_PMA_0h.RNA)\n(to:Sample|RIKEN3_PMA.CAGE) " -> "Sample|RIKEN3_PMA.CAGE" ;
"Hybridization|RIKEN3_PMA_12h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_12h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_12h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_12h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_12h.RNA_Hyb.Scan) " -> "Data|RIKEN3_PMA_12h.RNA_Hyb.Scan" ;
"Sample|RIKEN3_PMA_1h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_1h)\n(to:Extract|RIKEN3_PMA_1h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_1h)\n(to:Extract|RIKEN3_PMA_1h.RNA) " -> "Extract|RIKEN3_PMA_1h.RNA" ;
"Extract|RIKEN6_PMA_48h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_48h.RNA)\n(to:Hybridization|RIKEN6_PMA_48h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_48h.RNA)\n(to:Hybridization|RIKEN6_PMA_48h.RNA_Hyb) " -> "Hybridization|RIKEN6_PMA_48h.RNA_Hyb" ;
"Data|RIKEN1_PMA_48h.RNA.TFqRTPCR" -> " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_48h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [arrowhead = none] ;
" TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_48h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " -> "Data|qrtpcr_pma_timecourse" ;
"Extract|RIKEN6_PMA_96h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_96h.RNA)\n(to:Hybridization|RIKEN6_PMA_96h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_96h.RNA)\n(to:Hybridization|RIKEN6_PMA_96h.RNA_Hyb) " -> "Hybridization|RIKEN6_PMA_96h.RNA_Hyb" ;
"Extract|RIKEN6_PMA_96h.RNA" -> " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:TTGCA)\n(barcode_id:11)\n(house_keeping_gene:ACTB)\n(mixed_ratio:27.54)\n(from:Extract|RIKEN6_PMA_96h.RNA)\n(to:Sample|RIKEN6_PMA.CAGE) " [arrowhead = none] ;
" 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:TTGCA)\n(barcode_id:11)\n(house_keeping_gene:ACTB)\n(mixed_ratio:27.54)\n(from:Extract|RIKEN6_PMA_96h.RNA)\n(to:Sample|RIKEN6_PMA.CAGE) " -> "Sample|RIKEN6_PMA.CAGE" ;
"Data|I02_454_RAW_DATA" -> " TAG_EXTRACTION\n(barcode:TTGCA)\n(from:Data|I02_454_RAW_DATA)\n(to:Data|i02_tag_counts) " [arrowhead = none] ;
" TAG_EXTRACTION\n(barcode:TTGCA)\n(from:Data|I02_454_RAW_DATA)\n(to:Data|i02_tag_counts) " -> "Data|i02_tag_counts" ;
"Hybridization|RIKEN1_PMA_96h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_96h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_96h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_96h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_96h.RNA_Hyb.Scan) " -> "Data|RIKEN1_PMA_96h.RNA_Hyb.Scan" ;
"Sample|RIKEN3_PMA_4h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_4h)\n(to:Extract|RIKEN3_PMA_4h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_4h)\n(to:Extract|RIKEN3_PMA_4h.RNA) " -> "Extract|RIKEN3_PMA_4h.RNA" ;
"Source|F4-THP1" -> " THP1_CULTIVATE\n(from:Source|F4-THP1)\n(to:Sample|RIKEN3) " [arrowhead = none] ;
" THP1_CULTIVATE\n(from:Source|F4-THP1)\n(to:Sample|RIKEN3) " -> "Sample|RIKEN3" ;
"Source|F4-THP1" -> " THP1_CULTIVATE\n(from:Source|F4-THP1)\n(to:Sample|RIKEN6) " [arrowhead = none] ;
" THP1_CULTIVATE\n(from:Source|F4-THP1)\n(to:Sample|RIKEN6) " -> "Sample|RIKEN6" ;
"Source|F4-THP1" -> " THP1_CULTIVATE\n(from:Source|F4-THP1)\n(to:Sample|RIKEN1) " [arrowhead = none] ;
" THP1_CULTIVATE\n(from:Source|F4-THP1)\n(to:Sample|RIKEN1) " -> "Sample|RIKEN1" ;
"Data|RIKEN3_PMA_6h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_6h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_6h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Data|RIKEN1_PMA_1h.RNA.TFqRTPCR" -> " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_1h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [arrowhead = none] ;
" TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_1h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " -> "Data|qrtpcr_pma_timecourse" ;
"Data|RIKEN6_PMA_24h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_24h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_24h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Sample|RIKEN6_PMA_1h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_1h)\n(to:Extract|RIKEN6_PMA_1h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_1h)\n(to:Extract|RIKEN6_PMA_1h.RNA) " -> "Extract|RIKEN6_PMA_1h.RNA" ;
"File|h93_mapping" -> " LEVEL123_CLUSTERING\n(from:File|h93_mapping)\n(to:File|level_123_clusters) " [arrowhead = none] ;
" LEVEL123_CLUSTERING\n(from:File|h93_mapping)\n(to:File|level_123_clusters) " -> "File|level_123_clusters" ;
"Extract|RIKEN3_PMA_12h.RNA" -> " TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_12h.RNA)\n(to:Data|RIKEN3_PMA_12h.RNA.TFqRTPCR) " [arrowhead = none] ;
" TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_12h.RNA)\n(to:Data|RIKEN3_PMA_12h.RNA.TFqRTPCR) " -> "Data|RIKEN3_PMA_12h.RNA.TFqRTPCR" ;
"Extract|RIKEN3_PMA_12h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_12h.RNA)\n(to:Hybridization|RIKEN3_PMA_12h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_12h.RNA)\n(to:Hybridization|RIKEN3_PMA_12h.RNA_Hyb) " -> "Hybridization|RIKEN3_PMA_12h.RNA_Hyb" ;
"Extract|RIKEN3_PMA_12h.RNA" -> " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CTAAC)\n(barcode_id:9)\n(house_keeping_gene:ACTB)\n(mixed_ratio:23.6)\n(from:Extract|RIKEN3_PMA_12h.RNA)\n(to:Sample|RIKEN3_PMA.CAGE) " [arrowhead = none] ;
" 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CTAAC)\n(barcode_id:9)\n(house_keeping_gene:ACTB)\n(mixed_ratio:23.6)\n(from:Extract|RIKEN3_PMA_12h.RNA)\n(to:Sample|RIKEN3_PMA.CAGE) " -> "Sample|RIKEN3_PMA.CAGE" ;
"Hybridization|RIKEN3_PMA_72h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_72h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_72h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_72h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_72h.RNA_Hyb.Scan) " -> "Data|RIKEN3_PMA_72h.RNA_Hyb.Scan" ;
"Hybridization|RIKEN6_PMA_6h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_6h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_6h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_6h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_6h.RNA_Hyb.Scan) " -> "Data|RIKEN6_PMA_6h.RNA_Hyb.Scan" ;
"Sample|RIKEN3_PMA_72h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_72h)\n(to:Extract|RIKEN3_PMA_72h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_72h)\n(to:Extract|RIKEN3_PMA_72h.RNA) " -> "Extract|RIKEN3_PMA_72h.RNA" ;
"Data|RIKEN3_PMA_72h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_72h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_72h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Sample|RIKEN3_PMA_24h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_24h)\n(to:Extract|RIKEN3_PMA_24h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_24h)\n(to:Extract|RIKEN3_PMA_24h.RNA) " -> "Extract|RIKEN3_PMA_24h.RNA" ;
"Hybridization|RIKEN3_PMA_24h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_24h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_24h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_24h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_24h.RNA_Hyb.Scan) " -> "Data|RIKEN3_PMA_24h.RNA_Hyb.Scan" ;
"Extract|RIKEN3_PMA_6h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_6h.RNA)\n(to:Hybridization|RIKEN3_PMA_6h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_6h.RNA)\n(to:Hybridization|RIKEN3_PMA_6h.RNA_Hyb) " -> "Hybridization|RIKEN3_PMA_6h.RNA_Hyb" ;
"Extract|RIKEN3_PMA_6h.RNA" -> " TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_6h.RNA)\n(to:Data|RIKEN3_PMA_6h.RNA.TFqRTPCR) " [arrowhead = none] ;
" TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_6h.RNA)\n(to:Data|RIKEN3_PMA_6h.RNA.TFqRTPCR) " -> "Data|RIKEN3_PMA_6h.RNA.TFqRTPCR" ;
"Sample|RIKEN6_PMA_4h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_4h)\n(to:Extract|RIKEN6_PMA_4h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_4h)\n(to:Extract|RIKEN6_PMA_4h.RNA) " -> "Extract|RIKEN6_PMA_4h.RNA" ;
"Extract|RIKEN6_PMA_1h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_1h.RNA)\n(to:Hybridization|RIKEN6_PMA_1h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_1h.RNA)\n(to:Hybridization|RIKEN6_PMA_1h.RNA_Hyb) " -> "Hybridization|RIKEN6_PMA_1h.RNA_Hyb" ;
"Extract|RIKEN6_PMA_1h.RNA" -> " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CATTG)\n(barcode_id:7)\n(house_keeping_gene:ACTB)\n(mixed_ratio:15.93)\n(from:Extract|RIKEN6_PMA_1h.RNA)\n(to:Sample|RIKEN6_PMA.CAGE) " [arrowhead = none] ;
" 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CATTG)\n(barcode_id:7)\n(house_keeping_gene:ACTB)\n(mixed_ratio:15.93)\n(from:Extract|RIKEN6_PMA_1h.RNA)\n(to:Sample|RIKEN6_PMA.CAGE) " -> "Sample|RIKEN6_PMA.CAGE" ;
"Sample|RIKEN1_PMA_96h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_96h)\n(to:Extract|RIKEN1_PMA_96h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_96h)\n(to:Extract|RIKEN1_PMA_96h.RNA) " -> "Extract|RIKEN1_PMA_96h.RNA" ;
"Extract|RIKEN3_PMA_2h.RNA" -> " TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_2h.RNA)\n(to:Data|RIKEN3_PMA_2h.RNA.TFqRTPCR) " [arrowhead = none] ;
" TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_2h.RNA)\n(to:Data|RIKEN3_PMA_2h.RNA.TFqRTPCR) " -> "Data|RIKEN3_PMA_2h.RNA.TFqRTPCR" ;
"Extract|RIKEN3_PMA_2h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_2h.RNA)\n(to:Hybridization|RIKEN3_PMA_2h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_2h.RNA)\n(to:Hybridization|RIKEN3_PMA_2h.RNA_Hyb) " -> "Hybridization|RIKEN3_PMA_2h.RNA_Hyb" ;
"Extract|RIKEN1_PMA_0h.RNA" -> " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:GTTAC)\n(barcode_id:6)\n(house_keeping_gene:ACTB)\n(mixed_ratio:33.700000000000003)\n(from:Extract|RIKEN1_PMA_0h.RNA)\n(to:Sample|RIKEN1_PMA.CAGE) " [arrowhead = none] ;
" 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:GTTAC)\n(barcode_id:6)\n(house_keeping_gene:ACTB)\n(mixed_ratio:33.700000000000003)\n(from:Extract|RIKEN1_PMA_0h.RNA)\n(to:Sample|RIKEN1_PMA.CAGE) " -> "Sample|RIKEN1_PMA.CAGE" ;
"Extract|RIKEN1_PMA_0h.RNA" -> " TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_0h.RNA)\n(to:Data|RIKEN1_PMA_0h.RNA.TFqRTPCR) " [arrowhead = none] ;
" TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_0h.RNA)\n(to:Data|RIKEN1_PMA_0h.RNA.TFqRTPCR) " -> "Data|RIKEN1_PMA_0h.RNA.TFqRTPCR" ;
"Extract|RIKEN1_PMA_0h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_0h.RNA)\n(to:Hybridization|RIKEN1_PMA_0h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_0h.RNA)\n(to:Hybridization|RIKEN1_PMA_0h.RNA_Hyb) " -> "Hybridization|RIKEN1_PMA_0h.RNA_Hyb" ;
"Sample|RIKEN1_PMA_48h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_48h)\n(to:Extract|RIKEN1_PMA_48h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_48h)\n(to:Extract|RIKEN1_PMA_48h.RNA) " -> "Extract|RIKEN1_PMA_48h.RNA" ;
"Data|RIKEN1_PMA_96h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_96h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_96h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Extract|RIKEN1_PMA_12h.RNA" -> " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CTAAC)\n(barcode_id:9)\n(house_keeping_gene:ACTB)\n(mixed_ratio:36.700000000000003)\n(from:Extract|RIKEN1_PMA_12h.RNA)\n(to:Sample|RIKEN1_PMA.CAGE) " [arrowhead = none] ;
" 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CTAAC)\n(barcode_id:9)\n(house_keeping_gene:ACTB)\n(mixed_ratio:36.700000000000003)\n(from:Extract|RIKEN1_PMA_12h.RNA)\n(to:Sample|RIKEN1_PMA.CAGE) " -> "Sample|RIKEN1_PMA.CAGE" ;
"Extract|RIKEN1_PMA_12h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_12h.RNA)\n(to:Hybridization|RIKEN1_PMA_12h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_12h.RNA)\n(to:Hybridization|RIKEN1_PMA_12h.RNA_Hyb) " -> "Hybridization|RIKEN1_PMA_12h.RNA_Hyb" ;
"Extract|RIKEN1_PMA_12h.RNA" -> " TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_12h.RNA)\n(to:Data|RIKEN1_PMA_12h.RNA.TFqRTPCR) " [arrowhead = none] ;
" TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_12h.RNA)\n(to:Data|RIKEN1_PMA_12h.RNA.TFqRTPCR) " -> "Data|RIKEN1_PMA_12h.RNA.TFqRTPCR" ;
"Hybridization|RIKEN1_PMA_1h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_1h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_1h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_1h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_1h.RNA_Hyb.Scan) " -> "Data|RIKEN1_PMA_1h.RNA_Hyb.Scan" ;
"Sample|RIKEN1" -> " PMA_STIMULATION\n(hour:24)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_24h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:24)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_24h) " -> "Sample|RIKEN1_PMA_24h" ;
"Sample|RIKEN1" -> " PMA_STIMULATION\n(hour:1)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_1h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:1)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_1h) " -> "Sample|RIKEN1_PMA_1h" ;
"Sample|RIKEN1" -> " PMA_STIMULATION\n(hour:12)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_12h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:12)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_12h) " -> "Sample|RIKEN1_PMA_12h" ;
"Sample|RIKEN1" -> " PMA_STIMULATION\n(hour:0)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_0h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:0)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_0h) " -> "Sample|RIKEN1_PMA_0h" ;
"Sample|RIKEN1" -> " PMA_STIMULATION\n(hour:96)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_96h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:96)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_96h) " -> "Sample|RIKEN1_PMA_96h" ;
"Sample|RIKEN1" -> " PMA_STIMULATION\n(hour:6)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_6h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:6)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_6h) " -> "Sample|RIKEN1_PMA_6h" ;
"Sample|RIKEN1" -> " PMA_STIMULATION\n(hour:72)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_72h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:72)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_72h) " -> "Sample|RIKEN1_PMA_72h" ;
"Sample|RIKEN1" -> " PMA_STIMULATION\n(hour:4)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_4h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:4)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_4h) " -> "Sample|RIKEN1_PMA_4h" ;
"Sample|RIKEN1" -> " PMA_STIMULATION\n(hour:48)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_48h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:48)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_48h) " -> "Sample|RIKEN1_PMA_48h" ;
"Sample|RIKEN1" -> " PMA_STIMULATION\n(hour:2)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_2h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:2)\n(from:Sample|RIKEN1)\n(to:Sample|RIKEN1_PMA_2h) " -> "Sample|RIKEN1_PMA_2h" ;
"Data|RIKEN1_PMA_0h.RNA.TFqRTPCR" -> " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_0h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [arrowhead = none] ;
" TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_0h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " -> "Data|qrtpcr_pma_timecourse" ;
"Sample|RIKEN6_PMA_24h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_24h)\n(to:Extract|RIKEN6_PMA_24h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_24h)\n(to:Extract|RIKEN6_PMA_24h.RNA) " -> "Extract|RIKEN6_PMA_24h.RNA" ;
"Sample|RIKEN1_PMA_0h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_0h)\n(to:Extract|RIKEN1_PMA_0h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_0h)\n(to:Extract|RIKEN1_PMA_0h.RNA) " -> "Extract|RIKEN1_PMA_0h.RNA" ;
"Sample|RIKEN6_PMA_72h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_72h)\n(to:Extract|RIKEN6_PMA_72h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_72h)\n(to:Extract|RIKEN6_PMA_72h.RNA) " -> "Extract|RIKEN6_PMA_72h.RNA" ;
"Data|RIKEN3_PMA_0h.RNA.TFqRTPCR" -> " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_0h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [arrowhead = none] ;
" TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_0h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " -> "Data|qrtpcr_pma_timecourse" ;
"Hybridization|RIKEN6_PMA_2h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_2h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_2h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_2h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_2h.RNA_Hyb.Scan) " -> "Data|RIKEN6_PMA_2h.RNA_Hyb.Scan" ;
"Hybridization|RIKEN6_PMA_0h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_0h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_0h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_0h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_0h.RNA_Hyb.Scan) " -> "Data|RIKEN6_PMA_0h.RNA_Hyb.Scan" ;
"Sample|RIKEN3" -> " PMA_STIMULATION\n(hour:24)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_24h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:24)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_24h) " -> "Sample|RIKEN3_PMA_24h" ;
"Sample|RIKEN3" -> " PMA_STIMULATION\n(hour:1)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_1h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:1)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_1h) " -> "Sample|RIKEN3_PMA_1h" ;
"Sample|RIKEN3" -> " PMA_STIMULATION\n(hour:12)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_12h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:12)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_12h) " -> "Sample|RIKEN3_PMA_12h" ;
"Sample|RIKEN3" -> " PMA_STIMULATION\n(hour:0)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_0h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:0)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_0h) " -> "Sample|RIKEN3_PMA_0h" ;
"Sample|RIKEN3" -> " PMA_STIMULATION\n(hour:96)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_96h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:96)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_96h) " -> "Sample|RIKEN3_PMA_96h" ;
"Sample|RIKEN3" -> " PMA_STIMULATION\n(hour:6)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_6h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:6)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_6h) " -> "Sample|RIKEN3_PMA_6h" ;
"Sample|RIKEN3" -> " PMA_STIMULATION\n(hour:72)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_72h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:72)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_72h) " -> "Sample|RIKEN3_PMA_72h" ;
"Sample|RIKEN3" -> " PMA_STIMULATION\n(hour:4)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_4h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:4)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_4h) " -> "Sample|RIKEN3_PMA_4h" ;
"Sample|RIKEN3" -> " PMA_STIMULATION\n(hour:48)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_48h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:48)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_48h) " -> "Sample|RIKEN3_PMA_48h" ;
"Sample|RIKEN3" -> " PMA_STIMULATION\n(hour:2)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_2h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:2)\n(from:Sample|RIKEN3)\n(to:Sample|RIKEN3_PMA_2h) " -> "Sample|RIKEN3_PMA_2h" ;
"Hybridization|RIKEN3_PMA_96h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_96h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_96h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_96h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_96h.RNA_Hyb.Scan) " -> "Data|RIKEN3_PMA_96h.RNA_Hyb.Scan" ;
"Data|RIKEN1_PMA_72h.RNA.TFqRTPCR" -> " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_72h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [arrowhead = none] ;
" TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_72h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " -> "Data|qrtpcr_pma_timecourse" ;
"Data|RIKEN1_PMA_6h.RNA.TFqRTPCR" -> " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_6h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [arrowhead = none] ;
" TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_6h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " -> "Data|qrtpcr_pma_timecourse" ;
"Data|RIKEN6_PMA_0h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_0h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_0h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Extract|RIKEN1_PMA_6h.RNA" -> " TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_6h.RNA)\n(to:Data|RIKEN1_PMA_6h.RNA.TFqRTPCR) " [arrowhead = none] ;
" TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_6h.RNA)\n(to:Data|RIKEN1_PMA_6h.RNA.TFqRTPCR) " -> "Data|RIKEN1_PMA_6h.RNA.TFqRTPCR" ;
"Extract|RIKEN1_PMA_6h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_6h.RNA)\n(to:Hybridization|RIKEN1_PMA_6h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_6h.RNA)\n(to:Hybridization|RIKEN1_PMA_6h.RNA_Hyb) " -> "Hybridization|RIKEN1_PMA_6h.RNA_Hyb" ;
"Hybridization|RIKEN3_PMA_48h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_48h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_48h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_48h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_48h.RNA_Hyb.Scan) " -> "Data|RIKEN3_PMA_48h.RNA_Hyb.Scan" ;
"Data|RIKEN3_PMA_6h.RNA.TFqRTPCR" -> " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_6h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [arrowhead = none] ;
" TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_6h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " -> "Data|qrtpcr_pma_timecourse" ;
"Data|RIKEN3_PMA_1h.RNA.TFqRTPCR" -> " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_1h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [arrowhead = none] ;
" TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_1h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " -> "Data|qrtpcr_pma_timecourse" ;
"Data|RIKEN1_PMA_4h.RNA.TFqRTPCR" -> " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_4h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [arrowhead = none] ;
" TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_4h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " -> "Data|qrtpcr_pma_timecourse" ;
"Extract|RIKEN6_PMA_4h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_4h.RNA)\n(to:Hybridization|RIKEN6_PMA_4h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_4h.RNA)\n(to:Hybridization|RIKEN6_PMA_4h.RNA_Hyb) " -> "Hybridization|RIKEN6_PMA_4h.RNA_Hyb" ;
"Extract|RIKEN6_PMA_4h.RNA" -> " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CGTAA)\n(barcode_id:8)\n(house_keeping_gene:ACTB)\n(mixed_ratio:49)\n(from:Extract|RIKEN6_PMA_4h.RNA)\n(to:Sample|RIKEN6_PMA.CAGE) " [arrowhead = none] ;
" 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CGTAA)\n(barcode_id:8)\n(house_keeping_gene:ACTB)\n(mixed_ratio:49)\n(from:Extract|RIKEN6_PMA_4h.RNA)\n(to:Sample|RIKEN6_PMA.CAGE) " -> "Sample|RIKEN6_PMA.CAGE" ;
"Extract|RIKEN3_PMA_24h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_24h.RNA)\n(to:Hybridization|RIKEN3_PMA_24h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_24h.RNA)\n(to:Hybridization|RIKEN3_PMA_24h.RNA_Hyb) " -> "Hybridization|RIKEN3_PMA_24h.RNA_Hyb" ;
"Extract|RIKEN3_PMA_24h.RNA" -> " TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_24h.RNA)\n(to:Data|RIKEN3_PMA_24h.RNA.TFqRTPCR) " [arrowhead = none] ;
" TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_24h.RNA)\n(to:Data|RIKEN3_PMA_24h.RNA.TFqRTPCR) " -> "Data|RIKEN3_PMA_24h.RNA.TFqRTPCR" ;
"Extract|RIKEN3_PMA_24h.RNA" -> " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:TTAGT)\n(barcode_id:10)\n(house_keeping_gene:ACTB)\n(mixed_ratio:32.6)\n(from:Extract|RIKEN3_PMA_24h.RNA)\n(to:Sample|RIKEN3_PMA.CAGE) " [arrowhead = none] ;
" 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:TTAGT)\n(barcode_id:10)\n(house_keeping_gene:ACTB)\n(mixed_ratio:32.6)\n(from:Extract|RIKEN3_PMA_24h.RNA)\n(to:Sample|RIKEN3_PMA.CAGE) " -> "Sample|RIKEN3_PMA.CAGE" ;
"Data|RIKEN3_PMA_4h.RNA.TFqRTPCR" -> " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_4h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [arrowhead = none] ;
" TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_4h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " -> "Data|qrtpcr_pma_timecourse" ;
"Data|RIKEN6_PMA_1h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_1h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_1h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Extract|RIKEN3_PMA_72h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_72h.RNA)\n(to:Hybridization|RIKEN3_PMA_72h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN3_PMA_72h.RNA)\n(to:Hybridization|RIKEN3_PMA_72h.RNA_Hyb) " -> "Hybridization|RIKEN3_PMA_72h.RNA_Hyb" ;
"Extract|RIKEN3_PMA_72h.RNA" -> " TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_72h.RNA)\n(to:Data|RIKEN3_PMA_72h.RNA.TFqRTPCR) " [arrowhead = none] ;
" TF-qRT-PCR\n(from:Extract|RIKEN3_PMA_72h.RNA)\n(to:Data|RIKEN3_PMA_72h.RNA.TFqRTPCR) " -> "Data|RIKEN3_PMA_72h.RNA.TFqRTPCR" ;
"Data|RIKEN1_PMA_12h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_12h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_12h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Sample|RIKEN6" -> " PMA_STIMULATION\n(hour:72)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_72h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:72)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_72h) " -> "Sample|RIKEN6_PMA_72h" ;
"Sample|RIKEN6" -> " PMA_STIMULATION\n(hour:48)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_48h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:48)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_48h) " -> "Sample|RIKEN6_PMA_48h" ;
"Sample|RIKEN6" -> " PMA_STIMULATION\n(hour:6)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_6h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:6)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_6h) " -> "Sample|RIKEN6_PMA_6h" ;
"Sample|RIKEN6" -> " PMA_STIMULATION\n(hour:24)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_24h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:24)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_24h) " -> "Sample|RIKEN6_PMA_24h" ;
"Sample|RIKEN6" -> " PMA_STIMULATION\n(hour:4)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_4h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:4)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_4h) " -> "Sample|RIKEN6_PMA_4h" ;
"Sample|RIKEN6" -> " PMA_STIMULATION\n(hour:12)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_12h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:12)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_12h) " -> "Sample|RIKEN6_PMA_12h" ;
"Sample|RIKEN6" -> " PMA_STIMULATION\n(hour:2)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_2h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:2)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_2h) " -> "Sample|RIKEN6_PMA_2h" ;
"Sample|RIKEN6" -> " PMA_STIMULATION\n(hour:1)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_1h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:1)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_1h) " -> "Sample|RIKEN6_PMA_1h" ;
"Sample|RIKEN6" -> " PMA_STIMULATION\n(hour:0)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_0h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:0)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_0h) " -> "Sample|RIKEN6_PMA_0h" ;
"Sample|RIKEN6" -> " PMA_STIMULATION\n(hour:96)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_96h) " [arrowhead = none] ;
" PMA_STIMULATION\n(hour:96)\n(from:Sample|RIKEN6)\n(to:Sample|RIKEN6_PMA_96h) " -> "Sample|RIKEN6_PMA_96h" ;
"Sample|RIKEN1_PMA_6h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_6h)\n(to:Extract|RIKEN1_PMA_6h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_6h)\n(to:Extract|RIKEN1_PMA_6h.RNA) " -> "Extract|RIKEN1_PMA_6h.RNA" ;
"Data|RIKEN1_PMA_12h.RNA.TFqRTPCR" -> " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_12h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [arrowhead = none] ;
" TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN1_PMA_12h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " -> "Data|qrtpcr_pma_timecourse" ;
"Data|RIKEN6_PMA_48h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_48h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_48h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Hybridization|RIKEN6_PMA_12h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_12h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_12h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_12h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_12h.RNA_Hyb.Scan) " -> "Data|RIKEN6_PMA_12h.RNA_Hyb.Scan" ;
"Data|RIKEN6_PMA_4h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_4h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_4h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Data|RIKEN1_PMA_24h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_24h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_24h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Sample|RIKEN3_PMA_2h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_2h)\n(to:Extract|RIKEN3_PMA_2h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_2h)\n(to:Extract|RIKEN3_PMA_2h.RNA) " -> "Extract|RIKEN3_PMA_2h.RNA" ;
"Extract|RIKEN6_PMA_0h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_0h.RNA)\n(to:Hybridization|RIKEN6_PMA_0h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_0h.RNA)\n(to:Hybridization|RIKEN6_PMA_0h.RNA_Hyb) " -> "Hybridization|RIKEN6_PMA_0h.RNA_Hyb" ;
"Extract|RIKEN6_PMA_0h.RNA" -> " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:GTTAC)\n(barcode_id:6)\n(house_keeping_gene:ACTB)\n(mixed_ratio:11.96)\n(from:Extract|RIKEN6_PMA_0h.RNA)\n(to:Sample|RIKEN6_PMA.CAGE) " [arrowhead = none] ;
" 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:GTTAC)\n(barcode_id:6)\n(house_keeping_gene:ACTB)\n(mixed_ratio:11.96)\n(from:Extract|RIKEN6_PMA_0h.RNA)\n(to:Sample|RIKEN6_PMA.CAGE) " -> "Sample|RIKEN6_PMA.CAGE" ;
"Extract|RIKEN6_PMA_12h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_12h.RNA)\n(to:Hybridization|RIKEN6_PMA_12h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_12h.RNA)\n(to:Hybridization|RIKEN6_PMA_12h.RNA_Hyb) " -> "Hybridization|RIKEN6_PMA_12h.RNA_Hyb" ;
"Extract|RIKEN6_PMA_12h.RNA" -> " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CTAAC)\n(barcode_id:9)\n(house_keeping_gene:ACTB)\n(mixed_ratio:21.32)\n(from:Extract|RIKEN6_PMA_12h.RNA)\n(to:Sample|RIKEN6_PMA.CAGE) " [arrowhead = none] ;
" 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:CTAAC)\n(barcode_id:9)\n(house_keeping_gene:ACTB)\n(mixed_ratio:21.32)\n(from:Extract|RIKEN6_PMA_12h.RNA)\n(to:Sample|RIKEN6_PMA.CAGE) " -> "Sample|RIKEN6_PMA.CAGE" ;
"Data|RIKEN3_PMA_12h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_12h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN3_PMA_12h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Hybridization|RIKEN3_PMA_1h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_1h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_1h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_1h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_1h.RNA_Hyb.Scan) " -> "Data|RIKEN3_PMA_1h.RNA_Hyb.Scan" ;
"Extract|RIKEN1_PMA_24h.RNA" -> " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:TTAGT)\n(barcode_id:10)\n(house_keeping_gene:ACTB)\n(mixed_ratio:32.700000000000003)\n(from:Extract|RIKEN1_PMA_24h.RNA)\n(to:Sample|RIKEN1_PMA.CAGE) " [arrowhead = none] ;
" 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:TTAGT)\n(barcode_id:10)\n(house_keeping_gene:ACTB)\n(mixed_ratio:32.700000000000003)\n(from:Extract|RIKEN1_PMA_24h.RNA)\n(to:Sample|RIKEN1_PMA.CAGE) " -> "Sample|RIKEN1_PMA.CAGE" ;
"Extract|RIKEN1_PMA_24h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_24h.RNA)\n(to:Hybridization|RIKEN1_PMA_24h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_24h.RNA)\n(to:Hybridization|RIKEN1_PMA_24h.RNA_Hyb) " -> "Hybridization|RIKEN1_PMA_24h.RNA_Hyb" ;
"Extract|RIKEN1_PMA_24h.RNA" -> " TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_24h.RNA)\n(to:Data|RIKEN1_PMA_24h.RNA.TFqRTPCR) " [arrowhead = none] ;
" TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_24h.RNA)\n(to:Data|RIKEN1_PMA_24h.RNA.TFqRTPCR) " -> "Data|RIKEN1_PMA_24h.RNA.TFqRTPCR" ;
"Data|RIKEN6_PMA_2h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_2h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_2h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Hybridization|RIKEN1_PMA_4h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_4h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_4h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_4h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_4h.RNA_Hyb.Scan) " -> "Data|RIKEN1_PMA_4h.RNA_Hyb.Scan" ;
"Extract|RIKEN1_PMA_72h.RNA" -> " TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_72h.RNA)\n(to:Data|RIKEN1_PMA_72h.RNA.TFqRTPCR) " [arrowhead = none] ;
" TF-qRT-PCR\n(from:Extract|RIKEN1_PMA_72h.RNA)\n(to:Data|RIKEN1_PMA_72h.RNA.TFqRTPCR) " -> "Data|RIKEN1_PMA_72h.RNA.TFqRTPCR" ;
"Extract|RIKEN1_PMA_72h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_72h.RNA)\n(to:Hybridization|RIKEN1_PMA_72h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN1_PMA_72h.RNA)\n(to:Hybridization|RIKEN1_PMA_72h.RNA_Hyb) " -> "Hybridization|RIKEN1_PMA_72h.RNA_Hyb" ;
"Sample|RIKEN6_PMA_2h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_2h)\n(to:Extract|RIKEN6_PMA_2h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN6_PMA_2h)\n(to:Extract|RIKEN6_PMA_2h.RNA) " -> "Extract|RIKEN6_PMA_2h.RNA" ;
"Hybridization|RIKEN1_PMA_6h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_6h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_6h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_6h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_6h.RNA_Hyb.Scan) " -> "Data|RIKEN1_PMA_6h.RNA_Hyb.Scan" ;
"Sample|RIKEN1_PMA_12h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_12h)\n(to:Extract|RIKEN1_PMA_12h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_12h)\n(to:Extract|RIKEN1_PMA_12h.RNA) " -> "Extract|RIKEN1_PMA_12h.RNA" ;
"Extract|RIKEN6_PMA_6h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_6h.RNA)\n(to:Hybridization|RIKEN6_PMA_6h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_6h.RNA)\n(to:Hybridization|RIKEN6_PMA_6h.RNA_Hyb) " -> "Hybridization|RIKEN6_PMA_6h.RNA_Hyb" ;
"Data|RIKEN1_PMA_48h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_48h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_48h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Hybridization|RIKEN3_PMA_6h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_6h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_6h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN3_PMA_6h.RNA_Hyb)\n(to:Data|RIKEN3_PMA_6h.RNA_Hyb.Scan) " -> "Data|RIKEN3_PMA_6h.RNA_Hyb.Scan" ;
"Hybridization|RIKEN6_PMA_24h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_24h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_24h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN6_PMA_24h.RNA_Hyb)\n(to:Data|RIKEN6_PMA_24h.RNA_Hyb.Scan) " -> "Data|RIKEN6_PMA_24h.RNA_Hyb.Scan" ;
"File|i02_mapping" -> " LEVEL123_CLUSTERING\n(from:File|i02_mapping)\n(to:File|level_123_clusters) " [arrowhead = none] ;
" LEVEL123_CLUSTERING\n(from:File|i02_mapping)\n(to:File|level_123_clusters) " -> "File|level_123_clusters" ;
"Data|RIKEN3_PMA_72h.RNA.TFqRTPCR" -> " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_72h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [arrowhead = none] ;
" TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_72h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " -> "Data|qrtpcr_pma_timecourse" ;
"Data|RIKEN3_PMA_48h.RNA.TFqRTPCR" -> " TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_48h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " [arrowhead = none] ;
" TF-qRT-PCR-NORMALIZE\n(from:Data|RIKEN3_PMA_48h.RNA.TFqRTPCR)\n(to:Data|qrtpcr_pma_timecourse) " -> "Data|qrtpcr_pma_timecourse" ;
"Sample|H93" -> " 454seq\n(from:Sample|H93)\n(to:Data|H93_454_RAW_DATA) " [arrowhead = none] ;
" 454seq\n(from:Sample|H93)\n(to:Data|H93_454_RAW_DATA) " -> "Data|H93_454_RAW_DATA" ;
"File|i03_mapping" -> " LEVEL123_CLUSTERING\n(from:File|i03_mapping)\n(to:File|level_123_clusters) " [arrowhead = none] ;
" LEVEL123_CLUSTERING\n(from:File|i03_mapping)\n(to:File|level_123_clusters) " -> "File|level_123_clusters" ;
"Data|qrtpcr_pma_timecourse" -> "File|http://fantom.gsc.riken.jp/4/download/Tables/human/qRT-PCR/" ;
"Data|RIKEN6_PMA_6h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_6h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_6h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Data|RIKEN1_PMA_2h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_2h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN1_PMA_2h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Hybridization|RIKEN1_PMA_24h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_24h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_24h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_24h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_24h.RNA_Hyb.Scan) " -> "Data|RIKEN1_PMA_24h.RNA_Hyb.Scan" ;
"Sample|RIKEN1_PMA_1h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_1h)\n(to:Extract|RIKEN1_PMA_1h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN1_PMA_1h)\n(to:Extract|RIKEN1_PMA_1h.RNA) " -> "Extract|RIKEN1_PMA_1h.RNA" ;
"Hybridization|RIKEN1_PMA_0h.RNA_Hyb" -> " ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_0h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_0h.RNA_Hyb.Scan) " [arrowhead = none] ;
" ILLUMINA_SCANNING\nILLUMINA_IMAGE_ANALYSIS\n(from:Hybridization|RIKEN1_PMA_0h.RNA_Hyb)\n(to:Data|RIKEN1_PMA_0h.RNA_Hyb.Scan) " -> "Data|RIKEN1_PMA_0h.RNA_Hyb.Scan" ;
"Data|RIKEN6_PMA_72h.RNA_Hyb.Scan" -> " ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_72h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " [arrowhead = none] ;
" ILLUMINA_QUANTILE_NORMALIZATION\n(from:Data|RIKEN6_PMA_72h.RNA_Hyb.Scan)\n(to:Data|illumina_hg6v2_pma_timecourse) " -> "Data|illumina_hg6v2_pma_timecourse" ;
"Extract|RIKEN6_PMA_24h.RNA" -> " ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_24h.RNA)\n(to:Hybridization|RIKEN6_PMA_24h.RNA_Hyb) " [arrowhead = none] ;
" ILLUMINA_LABELING\nILLUMINA_HYBRIDIZATION\n(from:Extract|RIKEN6_PMA_24h.RNA)\n(to:Hybridization|RIKEN6_PMA_24h.RNA_Hyb) " -> "Hybridization|RIKEN6_PMA_24h.RNA_Hyb" ;
"Extract|RIKEN6_PMA_24h.RNA" -> " 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:TTAGT)\n(barcode_id:10)\n(house_keeping_gene:ACTB)\n(mixed_ratio:17.98)\n(from:Extract|RIKEN6_PMA_24h.RNA)\n(to:Sample|RIKEN6_PMA.CAGE) " [arrowhead = none] ;
" 454CAGE_step1\n(amount_of_RNA:50)\n(RT_primer:random primer)\n(barcode_sequence:TTAGT)\n(barcode_id:10)\n(house_keeping_gene:ACTB)\n(mixed_ratio:17.98)\n(from:Extract|RIKEN6_PMA_24h.RNA)\n(to:Sample|RIKEN6_PMA.CAGE) " -> "Sample|RIKEN6_PMA.CAGE" ;
"Sample|RIKEN3_PMA_96h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_96h)\n(to:Extract|RIKEN3_PMA_96h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_96h)\n(to:Extract|RIKEN3_PMA_96h.RNA) " -> "Extract|RIKEN3_PMA_96h.RNA" ;
"Sample|RIKEN3_PMA_48h" -> " TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_48h)\n(to:Extract|RIKEN3_PMA_48h.RNA) " [arrowhead = none] ;
" TRIZOL_RNA_EXTRACTION\n(from:Sample|RIKEN3_PMA_48h)\n(to:Extract|RIKEN3_PMA_48h.RNA) " -> "Extract|RIKEN3_PMA_48h.RNA" ;
}