2014-02-19
Marina Lizio (marina.lizio@riken.jp)
This folder contains sample ontology, ontology terms and enrichment. (hideya.kawaji@riken.jp), (erik.arner@riken.jp), (hisashi.shimoji@dnaform.jp)
Chris Mungall, Terry Meehan, and Alex Diehl created a FANTOM5 (F5) sample ontology that is meant to be overlaid the disease ontology (DOID), the Cell Ontology (CL), and the pan-vertebrate UBERON ontology. 
"FF:[1-9].*" indicate individual samples profiled, and "FF:0.*" are the terms to group individual samples.

*hg19_GOstats.tar.gz is an archive containing a tab-separated file with GOstat enrichment analysis per each sample. For each file, GO_id, GO_term, pvalue and entrez_geneid(rank) are reported. The last column is a list of all significantly enriched entrez gene ids and their rank relative to expression.
*ff-phase1-prerelease-20130717.obo is the full ontology classification tree in .obo format.