This folder contains CAGE peaks expression tables for the robust set of peaks.

mm10.fair+new_CAGE_peaks_phase1and2_ann.txt.gz - CAGE peak based table with annotated peaks for mouse samples (fairly remapped)
mm10.fair+new_CAGE_peaks_phase1and2_liftover_ann.txt.gz - CAGE peak based table with annotated peaks for mouse samples (all liftover)

mm10.fair+new_CAGE_peaks_phase1and2_counts.osc.txt.gz - CAGE peak based expression table (tag counts) for mouse samples
mm10.fair+new_CAGE_peaks_phase1and2_tpm.osc.txt.gz - CAGE peak based expression table (RLE normalized) for mouse samples [see edgeR documentation for further details about normalization method]
mm10.fair+new_CAGE_peaks_phase1and2_counts_ann.osc.txt.gz - CAGE peak based expression table (tag counts) for mouse with annotation
mm10.fair+new_CAGE_peaks_phase1and2_tpm_ann.osc.txt.gz - CAGE peak based expression table (RLE normalized) for mouse with annotation

mm10.fair+new_genes_phase1and2_counts.osc.txt.gz - gene based expression table (tag counts) for mouse samples
mm10.fair+new_genes_phase1and2_tpm.osc.txt.gz - gene based expression table (RLE normalized) for mouse samples