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Difference between revisions of "CL:0000036"

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{{CL
 
{{CL
|id=CL:0000036
+
|alt_id=
|name=epithelial fate stem cell
 
|namespace=cell
 
|def=
 
|xref=
 
|is_a=CL:0000035
 
|synonym=
 
 
|comment=
 
|comment=
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def=
|subset=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=CL:0000036
 +
|is_a=CL:0000035
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=epithelial fate stem cell
 +
|namespace=cell
 +
|obo_creation_date=
 
|part_of=
 
|part_of=
 +
|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
+
|subset=
|preceded_by=
+
|synonym=
 +
|union_of=
 +
|xref=
 
}}
 
}}

Revision as of 01:11, 12 September 2014

Name:epithelial fate stem cell
Namespace:cell


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000035(single fate stem cell)



Children


is a:CL:0000357 (stratified epithelial stem cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.




Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000036 (epithelial fate stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
2.83e-66FFCP PHASE2:Hg19::chr1:216595350..216595395,-#_1808b242ca8532633d4d747e1f24bac6p@chr1:216595350..216595395, -
2.83e-66FFCP PHASE1:Hg19::chr1:40770344..40770353,-#_1808b242ca8532633d4d747e1f24bac6p29@COL9A2
2.83e-66FFCP PHASE2:Hg19::chr15:46610897..46610904,+#_1808b242ca8532633d4d747e1f24bac6p@chr15:46610897..46610904, +
2.83e-66FFCP PHASE2:Hg19::chr4:6356121..6356152,-#_1808b242ca8532633d4d747e1f24bac6p@chr4:6356121..6356152, -
2.83e-66FFCP PHASE2:Hg19::chr9:139089234..139089236,-#_1808b242ca8532633d4d747e1f24bac6p@chr9:139089234..139089236, -
2.83e-66FFCP PHASE2:Hg19::chr1:242843433..242843446,-#_1808b242ca8532633d4d747e1f24bac6p@chr1:242843433..242843446, -
2.83e-66FFCP PHASE1:Hg19::chr20:49727833..49727839,-#_1808b242ca8532633d4d747e1f24bac6p@chr20:49727833..49727839, -
2.83e-66FFCP PHASE1:Hg19::chr22:27043104..27043111,+#_1808b242ca8532633d4d747e1f24bac6p27@MIAT
2.83e-66FFCP PHASE1:Hg19::chr3:66452082..66452087,-#_1808b242ca8532633d4d747e1f24bac6p@chr3:66452082..66452087, -
2.83e-66FFCP PHASE2:Hg19::chr11:79659052..79659060,-#_1808b242ca8532633d4d747e1f24bac6p@chr11:79659052..79659060, -
2.83e-66FFCP PHASE2:Hg19::chr9:33719626..33719633,-#_1808b242ca8532633d4d747e1f24bac6p@chr9:33719626..33719633, -
2.83e-66FFCP PHASE1:Hg19::chr1:201288895..201288902,+#_1808b242ca8532633d4d747e1f24bac6p@chr1:201288895..201288902, +
2.83e-66FFCP PHASE2:Hg19::chr6:112466463..112466468,+#_1808b242ca8532633d4d747e1f24bac6p@chr6:112466463..112466468, +
2.83e-66FFCP PHASE2:Hg19::chr15:46610951..46610964,+#_1808b242ca8532633d4d747e1f24bac6p@chr15:46610951..46610964, +
2.83e-66FFCP PHASE1:Hg19::chr1:216595350..216595395,-#_1808b242ca8532633d4d747e1f24bac6p@chr1:216595350..216595395, -
2.83e-66FFCP PHASE1:Hg19::chr4:6356121..6356152,-#_1808b242ca8532633d4d747e1f24bac6p@chr4:6356121..6356152, -
2.83e-66FFCP PHASE1:Hg19::chr1:242843433..242843446,-#_1808b242ca8532633d4d747e1f24bac6p@chr1:242843433..242843446, -
2.83e-66FFCP PHASE2:Hg19::chr1:216196797..216196801,-#_1808b242ca8532633d4d747e1f24bac6p@chr1:216196797..216196801, -
2.83e-66FFCP PHASE1:Hg19::chr9:139089234..139089236,-#_1808b242ca8532633d4d747e1f24bac6p@chr9:139089234..139089236, -
2.83e-66FFCP PHASE1:Hg19::chr15:46610847..46610851,+#_1808b242ca8532633d4d747e1f24bac6p@chr15:46610847..46610851, +
2.83e-66FFCP PHASE1:Hg19::chr11:79659013..79659021,-#_1808b242ca8532633d4d747e1f24bac6p@chr11:79659013..79659021, -
2.83e-66FFCP PHASE1:Hg19::chr6:112466463..112466468,+#_1808b242ca8532633d4d747e1f24bac6p@chr6:112466463..112466468, +
2.83e-66FFCP PHASE1:Hg19::chr9:33719626..33719633,-#_1808b242ca8532633d4d747e1f24bac6p@chr9:33719626..33719633, -
2.83e-66FFCP PHASE2:Hg19::chr5:64369097..64369105,+#_1808b242ca8532633d4d747e1f24bac6p@chr5:64369097..64369105, +
2.83e-66FFCP PHASE2:Hg19::chr19:39401676..39401683,-#_1808b242ca8532633d4d747e1f24bac6p@chr19:39401676..39401683, -
2.83e-66FFCP PHASE1:Hg19::chr1:216196797..216196801,-#_1808b242ca8532633d4d747e1f24bac6p@chr1:216196797..216196801, -
2.83e-66FFCP PHASE2:Hg19::chr1:40770344..40770353,-#_1808b242ca8532633d4d747e1f24bac6p29@COL9A2
2.83e-66FFCP PHASE1:Hg19::chr15:46610897..46610904,+#_1808b242ca8532633d4d747e1f24bac6p@chr15:46610897..46610904, +
2.83e-66FFCP PHASE1:Hg19::chr11:79659052..79659060,-#_1808b242ca8532633d4d747e1f24bac6p@chr11:79659052..79659060, -
2.83e-66FFCP PHASE2:Hg19::chr20:49727833..49727839,-#_1808b242ca8532633d4d747e1f24bac6p@chr20:49727833..49727839, -
2.83e-66FFCP PHASE1:Hg19::chr5:64369097..64369105,+#_1808b242ca8532633d4d747e1f24bac6p@chr5:64369097..64369105, +
2.83e-66FFCP PHASE2:Hg19::chr15:46610847..46610851,+#_1808b242ca8532633d4d747e1f24bac6p@chr15:46610847..46610851, +
2.83e-66FFCP PHASE2:Hg19::chr22:27043104..27043111,+#_1808b242ca8532633d4d747e1f24bac6p27@MIAT
2.83e-66FFCP PHASE2:Hg19::chr3:66452082..66452087,-#_1808b242ca8532633d4d747e1f24bac6p@chr3:66452082..66452087, -
2.83e-66FFCP PHASE1:Hg19::chr19:39401676..39401683,-#_1808b242ca8532633d4d747e1f24bac6p@chr19:39401676..39401683, -
2.83e-66FFCP PHASE1:Hg19::chr15:46610951..46610964,+#_1808b242ca8532633d4d747e1f24bac6p@chr15:46610951..46610964, +
2.83e-66FFCP PHASE2:Hg19::chr1:201288895..201288902,+#_1808b242ca8532633d4d747e1f24bac6p@chr1:201288895..201288902, +
2.83e-66FFCP PHASE2:Hg19::chr11:79659013..79659021,-#_1808b242ca8532633d4d747e1f24bac6p@chr11:79659013..79659021, -
4.55e-50FFCP PHASE2:Hg19::chr1:16090914..16090925,+#_24dcf5b318e8da2db733fc9c03d40b84p22@FBLIM1
4.55e-50FFCP PHASE1:Hg19::chr1:16090914..16090925,+#_24dcf5b318e8da2db733fc9c03d40b84p22@FBLIM1
9.76e-45FFCP PHASE2:Hg19::chr1:155048171..155048179,+#_64a347ae78c91069b5fa143830cbdedcp@chr1:155048171..155048179, +
9.76e-45FFCP PHASE2:Hg19::chr12:65175253..65175283,-#_64a347ae78c91069b5fa143830cbdedcp@chr12:65175253..65175283, -
9.76e-45FFCP PHASE1:Hg19::chr9:139096224..139096231,-#_64a347ae78c91069b5fa143830cbdedcp@chr9:139096224..139096231, -
9.76e-45FFCP PHASE1:Hg19::chr5:145722450..145722456,+#_64a347ae78c91069b5fa143830cbdedcp@chr5:145722450..145722456, +
9.76e-45FFCP PHASE2:Hg19::chr1:155048200..155048207,+#_64a347ae78c91069b5fa143830cbdedcp@chr1:155048200..155048207, +
9.76e-45FFCP PHASE1:Hg19::chr16:53653257..53653264,-#_64a347ae78c91069b5fa143830cbdedcp@chr16:53653257..53653264, -
9.76e-45FFCP PHASE1:Hg19::chr11:128634589..128634606,+#_64a347ae78c91069b5fa143830cbdedcp14@FLI1
9.76e-45FFCP PHASE2:Hg19::chr5:64369069..64369083,+#_64a347ae78c91069b5fa143830cbdedcp@chr5:64369069..64369083, +
9.76e-45FFCP PHASE1:Hg19::chr1:155048171..155048179,+#_64a347ae78c91069b5fa143830cbdedcp@chr1:155048171..155048179, +
9.76e-45FFCP PHASE2:Hg19::chr9:33719660..33719671,-#_64a347ae78c91069b5fa143830cbdedcp@chr9:33719660..33719671, -
9.76e-45FFCP PHASE1:Hg19::chr1:155048200..155048207,+#_64a347ae78c91069b5fa143830cbdedcp@chr1:155048200..155048207, +
9.76e-45FFCP PHASE2:Hg19::chr22:35921483..35921490,-#_64a347ae78c91069b5fa143830cbdedcp@chr22:35921483..35921490, -
9.76e-45FFCP PHASE1:Hg19::chr5:64369069..64369083,+#_64a347ae78c91069b5fa143830cbdedcp@chr5:64369069..64369083, +
9.76e-45FFCP PHASE2:Hg19::chr16:53653257..53653264,-#_64a347ae78c91069b5fa143830cbdedcp@chr16:53653257..53653264, -
9.76e-45FFCP PHASE1:Hg19::chr12:65175253..65175283,-#_64a347ae78c91069b5fa143830cbdedcp@chr12:65175253..65175283, -
9.76e-45FFCP PHASE1:Hg19::chr9:33719660..33719671,-#_64a347ae78c91069b5fa143830cbdedcp@chr9:33719660..33719671, -
9.76e-45FFCP PHASE2:Hg19::chr11:128634589..128634606,+#_64a347ae78c91069b5fa143830cbdedcp14@FLI1
9.76e-45FFCP PHASE2:Hg19::chr9:139096224..139096231,-#_64a347ae78c91069b5fa143830cbdedcp@chr9:139096224..139096231, -
9.76e-45FFCP PHASE1:Hg19::chr22:35921483..35921490,-#_64a347ae78c91069b5fa143830cbdedcp@chr22:35921483..35921490, -
9.76e-45FFCP PHASE2:Hg19::chr5:145722450..145722456,+#_64a347ae78c91069b5fa143830cbdedcp@chr5:145722450..145722456, +
1.22e-44FFCP PHASE2:Hg19::chr20:49727891..49727898,-#_e81f824ce68b344a3903cd9c5e150206p@chr20:49727891..49727898, -
1.22e-44FFCP PHASE2:Hg19::chr11:31312513..31312524,-#_e81f824ce68b344a3903cd9c5e150206p@chr11:31312513..31312524, -
1.22e-44FFCP PHASE2:Hg19::chr12:54786411..54786421,-#_e81f824ce68b344a3903cd9c5e150206p@chr12:54786411..54786421, -
1.22e-44FFCP PHASE1:Hg19::chr5:14742023..14742037,-#_e81f824ce68b344a3903cd9c5e150206p@chr5:14742023..14742037, -
1.22e-44FFCP PHASE2:Hg19::chr5:145724630..145724641,+#_e81f824ce68b344a3903cd9c5e150206p@chr5:145724630..145724641, +
1.22e-44FFCP PHASE2:Hg19::chr20:31116333..31116338,-#_e81f824ce68b344a3903cd9c5e150206p@chr20:31116333..31116338, -
1.22e-44FFCP PHASE1:Hg19::chr2:3152671..3152679,-#_e81f824ce68b344a3903cd9c5e150206p@chr2:3152671..3152679, -
1.22e-44FFCP PHASE1:Hg19::chr20:49727891..49727898,-#_e81f824ce68b344a3903cd9c5e150206p@chr20:49727891..49727898, -
1.22e-44FFCP PHASE2:Hg19::chr5:145724642..145724652,+#_e81f824ce68b344a3903cd9c5e150206p@chr5:145724642..145724652, +
1.22e-44FFCP PHASE2:Hg19::chr18:13165683..13165695,-#_e81f824ce68b344a3903cd9c5e150206p@chr18:13165683..13165695, -
1.22e-44FFCP PHASE1:Hg19::chr20:31116333..31116338,-#_e81f824ce68b344a3903cd9c5e150206p@chr20:31116333..31116338, -
1.22e-44FFCP PHASE1:Hg19::chr5:145724630..145724641,+#_e81f824ce68b344a3903cd9c5e150206p@chr5:145724630..145724641, +
1.22e-44FFCP PHASE1:Hg19::chr18:13165683..13165695,-#_e81f824ce68b344a3903cd9c5e150206p@chr18:13165683..13165695, -
1.22e-44FFCP PHASE2:Hg19::chr1:216286476..216286479,-#_e81f824ce68b344a3903cd9c5e150206p@chr1:216286476..216286479, -
1.22e-44FFCP PHASE1:Hg19::chr11:31312513..31312524,-#_e81f824ce68b344a3903cd9c5e150206p@chr11:31312513..31312524, -
1.22e-44FFCP PHASE1:Hg19::chr12:54786411..54786421,-#_e81f824ce68b344a3903cd9c5e150206p@chr12:54786411..54786421, -
1.22e-44FFCP PHASE1:Hg19::chr5:145724642..145724652,+#_e81f824ce68b344a3903cd9c5e150206p@chr5:145724642..145724652, +
1.22e-44FFCP PHASE2:Hg19::chr5:14742023..14742037,-#_e81f824ce68b344a3903cd9c5e150206p@chr5:14742023..14742037, -
1.22e-44FFCP PHASE1:Hg19::chr1:216286476..216286479,-#_e81f824ce68b344a3903cd9c5e150206p@chr1:216286476..216286479, -
1.22e-44FFCP PHASE2:Hg19::chr2:3152671..3152679,-#_e81f824ce68b344a3903cd9c5e150206p@chr2:3152671..3152679, -
1.52e-44FFCP PHASE1:Hg19::chr7:1327611..1327629,+#_3c11d5e1d670004380461ef52ab1ead6p@chr7:1327611..1327629, +
1.52e-44FFCP PHASE2:Hg19::chr3:77121235..77121260,+#_3c11d5e1d670004380461ef52ab1ead6p@chr3:77121235..77121260, +
1.52e-44FFCP PHASE2:Hg19::chr7:1327587..1327610,+#_3c11d5e1d670004380461ef52ab1ead6p@chr7:1327587..1327610, +
1.52e-44FFCP PHASE2:Hg19::chr7:1327611..1327629,+#_3c11d5e1d670004380461ef52ab1ead6p@chr7:1327611..1327629, +
1.52e-44FFCP PHASE1:Hg19::chr3:77121235..77121260,+#_3c11d5e1d670004380461ef52ab1ead6p@chr3:77121235..77121260, +
1.52e-44FFCP PHASE1:Hg19::chr7:1327587..1327610,+#_3c11d5e1d670004380461ef52ab1ead6p@chr7:1327587..1327610, +
5.62e-43FFCP PHASE2:Hg19::chr2:227008823..227008831,-#_af759514d7ea1bccd3c3580c2043d9d8p@chr2:227008823..227008831, -
5.62e-43FFCP PHASE1:Hg19::chr2:227008823..227008831,-#_af759514d7ea1bccd3c3580c2043d9d8p@chr2:227008823..227008831, -
1.33e-42FFCP PHASE2:Hg19::chr8:130798890..130798901,-#_74a020bc76ac0e4aec4ace7289da801ap3@GSDMC
1.33e-42FFCP PHASE1:Hg19::chr8:130798890..130798901,-#_74a020bc76ac0e4aec4ace7289da801ap3@GSDMC
7.14e-38FFCP PHASE2:Hg19::chr4:87770202..87770211,-#_78f808e0a7b11d157b921f4ce7123d1cp5@SLC10A6
7.14e-38FFCP PHASE1:Hg19::chr4:87770202..87770211,-#_78f808e0a7b11d157b921f4ce7123d1cp5@SLC10A6
2.34e-35FFCP PHASE2:Hg19::chr2:28785707..28785729,+#_c835d92ce16bb338cce9851cb06fed82p@chr2:28785707..28785729, +
2.34e-35FFCP PHASE1:Hg19::chr2:28785707..28785729,+#_c835d92ce16bb338cce9851cb06fed82p@chr2:28785707..28785729, +
4.27e-34FFCP PHASE1:Hg19::chr2:197081754..197081790,-#_44505d9784f0e30ac701362532b06e3dp@chr2:197081754..197081790, -
4.27e-34FFCP PHASE1:Hg19::chr3:182129807..182129809,-#_44505d9784f0e30ac701362532b06e3dp@chr3:182129807..182129809, -
4.27e-34FFCP PHASE2:Hg19::chr1:3844945..3844991,+#_44505d9784f0e30ac701362532b06e3dp@chr1:3844945..3844991, +
4.27e-34FFCP PHASE2:Hg19::chr18:77543021..77543032,-#_44505d9784f0e30ac701362532b06e3dp@chr18:77543021..77543032, -
4.27e-34FFCP PHASE1:Hg19::chr3:140784752..140784757,+#_44505d9784f0e30ac701362532b06e3dp10@SPSB4
4.27e-34FFCP PHASE2:Hg19::chr1:19403353..19403358,-#_44505d9784f0e30ac701362532b06e3dp@chr1:19403353..19403358, -