Personal tools

CL:0000055: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{CL
{{CL
|id=CL:0000055
|id=CL:0000055
|name=non-terminally differentiated cell
|name=blast cell;;non-terminally differentiated cell
|namespace=efo
|namespace=cell;;efo
|def="A precursor cell with a limited number of potential fates." [SANBI:mhl]
|def="A precursor cell with a limited number of potential fates." [SANBI:mhl]
|xref=BTO:0000125;;FMA:84782
|xref=BTO:0000125;;FMA:84782
|is_a=CL:0000012;;EFO:0000324
|is_a=CL:0000003;;EFO:0000324
|synonym="blast cell" EXACT []
|synonym="blast cell" EXACT []
|comment=
|comment=define using PATO mulit-potent or oligopotent?
|alt_id=
|alt_id=
|disjoint_from=
|disjoint_from=
Line 14: Line 14:
|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
Line 20: Line 19:
|located_in=
|located_in=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:24, 26 June 2012

Name:blast cell;;non-terminally differentiated cell
Namespace:cell;;efo
Definition:"A precursor cell with a limited number of potential fates." [SANBI:mhl]
Xrefs:
links:

BTO:0000125

FMA:84782
Synonyms: "blast cell" EXACT []
Comments:define using PATO mulit-potent or oligopotent?


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000003(native cell),EFO:0000324(cell type)



Children


is a:CL:0000030 (glioblast),CL:0000031 (neuroblast),CL:0000058 (chondroblast),CL:0000062 (osteoblast),CL:0000541 (melanoblast),CL:0000680 (muscle precursor cell),CL:0007009 (prechondroblast),CL:0007010 (preosteoblast)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000055 (blast cell;;non-terminally differentiated cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results for this cluster