Personal tools

CL:0000094: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:0000094
|alt_id=
|name=granulocyte
|namespace=efo
|def="A leukocyte with abundant granules in the cytoplasm." [GOC:amm, GOC:tfm, MESH:A.11.118.637.415]
|xref=BTO:0000539;;BTO:0001026;;FMA:62854
|is_a=CL:0000081;;CL:0000766
|synonym="granular leucocyte" EXACT [];;"granular leukocyte" EXACT [];;"polymorphonuclear leukocyte" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A leukocyte with abundant granules in the cytoplasm." [GOC:amm, GOC:tfm, MESH:A.11.118.637.415]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000094
|is_a=CL:0000081 ;;CL:0000766
|is_obsolete=
|located_in=
|located_in=
|name=granulocyte
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|subset=
|synonym="granular leucocyte" EXACT [];;"granular leukocyte" EXACT [];;"polymorphonuclear leukocyte" EXACT []
|union_of=
|xref=BTO:0000539;;BTO:0001026;;FMA:62854
}}
}}

Latest revision as of 16:29, 12 September 2014

Name:granulocyte
Namespace:FANTOM
Definition:"A leukocyte with abundant granules in the cytoplasm." [GOC:amm, GOC:tfm, MESH:A.11.118.637.415]
Xrefs:
links:

BTO:0000539
BTO:0001026

FMA:62854
Synonyms: "granular leucocyte" EXACT []
"granular leukocyte" EXACT []
"polymorphonuclear leukocyte" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000081(blood cell),CL:0000766(myeloid leukocyte)



Children


is a:FF:0000214 (CD15-positive granulocyte),CL:0000767 (basophil),CL:0000771 (eosinophil),CL:0000775 (neutrophil)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000094 (granulocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.98e-147FFCP PHASE2:Hg19::chr10:73530674..73530683,-#_35f68e732b63df04fbaac01a88d634c0p@chr10:73530674..73530683, -
8.98e-147FFCP PHASE2:Hg19::chr12:3827524..3827527,+#_35f68e732b63df04fbaac01a88d634c0p@chr12:3827524..3827527, +
8.98e-147FFCP PHASE1:Hg19::chr12:3827524..3827527,+#_35f68e732b63df04fbaac01a88d634c0p@chr12:3827524..3827527, +
8.98e-147FFCP PHASE1:Hg19::chr10:73530674..73530683,-#_35f68e732b63df04fbaac01a88d634c0p@chr10:73530674..73530683, -
1.36e-133FFCP PHASE1:Hg19::chr11:67055888..67055896,-#_92c8ec9850562704f66ee524730cc281p@chr11:67055888..67055896, -
1.36e-133FFCP PHASE2:Hg19::chr11:67055888..67055896,-#_92c8ec9850562704f66ee524730cc281p@chr11:67055888..67055896, -
1.5e-122FFCP PHASE1:Hg19::chr2:70246139..70246146,-#_494594e457aa50e4942936a77e67bb94p@chr2:70246139..70246146, -
1.5e-122FFCP PHASE2:Hg19::chr2:70246139..70246146,-#_494594e457aa50e4942936a77e67bb94p@chr2:70246139..70246146, -
1.5e-122FFCP PHASE2:Hg19::chr1:208712347..208712354,+#_494594e457aa50e4942936a77e67bb94p@chr1:208712347..208712354, +
1.5e-122FFCP PHASE2:Hg19::chr12:8720206..8720211,-#_494594e457aa50e4942936a77e67bb94p4@ENST00000542819
1.5e-122FFCP PHASE1:Hg19::chr1:182367189..182367199,+#_494594e457aa50e4942936a77e67bb94p@chr1:182367189..182367199, +
1.5e-122FFCP PHASE1:Hg19::chr7:128048285..128048310,-#_494594e457aa50e4942936a77e67bb94p@chr7:128048285..128048310, -
1.5e-122FFCP PHASE1:Hg19::chr2:103106370..103106380,+#_494594e457aa50e4942936a77e67bb94p@chr2:103106370..103106380, +
1.5e-122FFCP PHASE1:Hg19::chr2:120967895..120967903,-#_494594e457aa50e4942936a77e67bb94p@chr2:120967895..120967903, -
1.5e-122FFCP PHASE1:Hg19::chr2:120967889..120967892,-#_494594e457aa50e4942936a77e67bb94p@chr2:120967889..120967892, -
1.5e-122FFCP PHASE1:Hg19::chr7:112062470..112062479,+#_494594e457aa50e4942936a77e67bb94p@chr7:112062470..112062479, +
1.5e-122FFCP PHASE2:Hg19::chr2:103106370..103106380,+#_494594e457aa50e4942936a77e67bb94p@chr2:103106370..103106380, +
1.5e-122FFCP PHASE1:Hg19::chr12:8720206..8720211,-#_494594e457aa50e4942936a77e67bb94p4@ENST00000542819
1.5e-122FFCP PHASE1:Hg19::chr8:133774199..133774210,-#_494594e457aa50e4942936a77e67bb94p@chr8:133774199..133774210, -
1.5e-122FFCP PHASE2:Hg19::chr7:112062470..112062479,+#_494594e457aa50e4942936a77e67bb94p@chr7:112062470..112062479, +
1.5e-122FFCP PHASE2:Hg19::chr8:133774199..133774210,-#_494594e457aa50e4942936a77e67bb94p@chr8:133774199..133774210, -
1.5e-122FFCP PHASE2:Hg19::chr7:128048285..128048310,-#_494594e457aa50e4942936a77e67bb94p@chr7:128048285..128048310, -
1.5e-122FFCP PHASE2:Hg19::chr11:1865720..1865724,+#_494594e457aa50e4942936a77e67bb94p@chr11:1865720..1865724, +
1.5e-122FFCP PHASE1:Hg19::chr1:27155357..27155367,+#_494594e457aa50e4942936a77e67bb94p@chr1:27155357..27155367, +
1.5e-122FFCP PHASE1:Hg19::chr15:90579320..90579331,-#_494594e457aa50e4942936a77e67bb94p@chr15:90579320..90579331, -
1.5e-122FFCP PHASE2:Hg19::chr15:90579320..90579331,-#_494594e457aa50e4942936a77e67bb94p@chr15:90579320..90579331, -
1.5e-122FFCP PHASE2:Hg19::chr1:27155357..27155367,+#_494594e457aa50e4942936a77e67bb94p@chr1:27155357..27155367, +
1.5e-122FFCP PHASE1:Hg19::chr1:206731759..206731770,+#_494594e457aa50e4942936a77e67bb94p@chr1:206731759..206731770, +
1.5e-122FFCP PHASE2:Hg19::chr1:206731759..206731770,+#_494594e457aa50e4942936a77e67bb94p@chr1:206731759..206731770, +
1.5e-122FFCP PHASE2:Hg19::chr2:120967889..120967892,-#_494594e457aa50e4942936a77e67bb94p@chr2:120967889..120967892, -
1.5e-122FFCP PHASE2:Hg19::chr17:80187468..80187472,+#_494594e457aa50e4942936a77e67bb94p@chr17:80187468..80187472, +
1.5e-122FFCP PHASE1:Hg19::chr1:208712347..208712354,+#_494594e457aa50e4942936a77e67bb94p@chr1:208712347..208712354, +
1.5e-122FFCP PHASE2:Hg19::chr14:88469399..88469404,-#_494594e457aa50e4942936a77e67bb94p@chr14:88469399..88469404, -
1.5e-122FFCP PHASE1:Hg19::chr17:80187468..80187472,+#_494594e457aa50e4942936a77e67bb94p@chr17:80187468..80187472, +
1.5e-122FFCP PHASE1:Hg19::chr14:88469399..88469404,-#_494594e457aa50e4942936a77e67bb94p@chr14:88469399..88469404, -
1.5e-122FFCP PHASE2:Hg19::chr2:120967895..120967903,-#_494594e457aa50e4942936a77e67bb94p@chr2:120967895..120967903, -
1.5e-122FFCP PHASE1:Hg19::chr11:1865720..1865724,+#_494594e457aa50e4942936a77e67bb94p@chr11:1865720..1865724, +
1.5e-122FFCP PHASE2:Hg19::chr1:182367189..182367199,+#_494594e457aa50e4942936a77e67bb94p@chr1:182367189..182367199, +
2.1e-120FFCP PHASE1:Hg19::chr3:12689370..12689373,+#_2278f238825a3fd8e6e59f982bf8ec7ap@chr3:12689370..12689373, +
2.1e-120FFCP PHASE2:Hg19::chr3:12689370..12689373,+#_2278f238825a3fd8e6e59f982bf8ec7ap@chr3:12689370..12689373, +
3.57e-120FFCP PHASE1:Hg19::chrX:22015219..22015221,+#_ca294ad645e53555e4bf5c6c67d2f8a1p@chrX:22015219..22015221, +
3.57e-120FFCP PHASE2:Hg19::chrX:22015219..22015221,+#_ca294ad645e53555e4bf5c6c67d2f8a1p@chrX:22015219..22015221, +
7.05e-113FFCP PHASE2:Hg19::chr3:72150292..72150301,+#_38fe549a13597a457d1e3fd0ed19c59fp@chr3:72150292..72150301, +
7.05e-113FFCP PHASE1:Hg19::chr3:72150292..72150301,+#_38fe549a13597a457d1e3fd0ed19c59fp@chr3:72150292..72150301, +
1.26e-112FFCP PHASE2:Hg19::chr19:18613543..18613548,-#_656d29cd0c30396bcfaf80b10c6b8f2fp@chr19:18613543..18613548, -
1.26e-112FFCP PHASE1:Hg19::chr19:18613543..18613548,-#_656d29cd0c30396bcfaf80b10c6b8f2fp@chr19:18613543..18613548, -
5.34e-112FFCP PHASE1:Hg19::chr3:128946643..128946657,-#_3771b435811b4e1499cc73a96b9c4165p@chr3:128946643..128946657, -
5.34e-112FFCP PHASE2:Hg19::chr3:128946643..128946657,-#_3771b435811b4e1499cc73a96b9c4165p@chr3:128946643..128946657, -
9.87e-111FFCP PHASE2:Hg19::chr1:182367155..182367159,+#_ec7c24fc2c6d7e70ad881f2d36003e8fp@chr1:182367155..182367159, +
9.87e-111FFCP PHASE1:Hg19::chr1:182367155..182367159,+#_ec7c24fc2c6d7e70ad881f2d36003e8fp@chr1:182367155..182367159, +
3.07e-110FFCP PHASE1:Hg19::chr2:136971902..136971905,-#_f92cc306a2fa002cc8aee46a34258b8fp@chr2:136971902..136971905, -
3.07e-110FFCP PHASE2:Hg19::chr2:136971902..136971905,-#_f92cc306a2fa002cc8aee46a34258b8fp@chr2:136971902..136971905, -
6.86e-110FFCP PHASE1:Hg19::chr15:90574798..90574806,+#_51baa4f5a950f401ee23f146dd5ebd1fp@chr15:90574798..90574806, +
6.86e-110FFCP PHASE2:Hg19::chr15:90574798..90574806,+#_51baa4f5a950f401ee23f146dd5ebd1fp@chr15:90574798..90574806, +
1.67e-105FFCP PHASE1:Hg19::chr1:117057737..117057747,-#_10d2db52a38b844c17b56936818fec3bp@chr1:117057737..117057747, -
1.67e-105FFCP PHASE2:Hg19::chr1:117057737..117057747,-#_10d2db52a38b844c17b56936818fec3bp@chr1:117057737..117057747, -
1.77e-102FFCP PHASE2:Hg19::chr11:75482683..75482690,-#_3cbc8347b0c09536e1133bca241358f7p@chr11:75482683..75482690, -
1.77e-102FFCP PHASE1:Hg19::chr15:69075220..69075232,-#_3cbc8347b0c09536e1133bca241358f7p@chr15:69075220..69075232, -
1.77e-102FFCP PHASE2:Hg19::chr20:48963128..48963163,+#_3cbc8347b0c09536e1133bca241358f7p@chr20:48963128..48963163, +
1.77e-102FFCP PHASE2:Hg19::chr2:70274580..70274587,-#_3cbc8347b0c09536e1133bca241358f7p@chr2:70274580..70274587, -
1.77e-102FFCP PHASE1:Hg19::chr15:80189589..80189598,+#_3cbc8347b0c09536e1133bca241358f7p@chr15:80189589..80189598, +
1.77e-102FFCP PHASE2:Hg19::chr21:42739014..42739023,+#_3cbc8347b0c09536e1133bca241358f7p@chr21:42739014..42739023, +
1.77e-102FFCP PHASE1:Hg19::chr1:185389832..185389838,-#_3cbc8347b0c09536e1133bca241358f7p@chr1:185389832..185389838, -
1.77e-102FFCP PHASE1:Hg19::chr20:4792540..4792567,+#_3cbc8347b0c09536e1133bca241358f7p@chr20:4792540..4792567, +
1.77e-102FFCP PHASE2:Hg19::chr4:74702740..74702748,-#_3cbc8347b0c09536e1133bca241358f7p@chr4:74702740..74702748, -
1.77e-102FFCP PHASE1:Hg19::chr2:70246087..70246098,-#_3cbc8347b0c09536e1133bca241358f7p@chr2:70246087..70246098, -
1.77e-102FFCP PHASE2:Hg19::chr1:185389832..185389838,-#_3cbc8347b0c09536e1133bca241358f7p@chr1:185389832..185389838, -
1.77e-102FFCP PHASE1:Hg19::chr4:74702740..74702748,-#_3cbc8347b0c09536e1133bca241358f7p@chr4:74702740..74702748, -
1.77e-102FFCP PHASE1:Hg19::chr8:133774445..133774459,+#_3cbc8347b0c09536e1133bca241358f7p@chr8:133774445..133774459, +
1.77e-102FFCP PHASE2:Hg19::chr15:69075220..69075232,-#_3cbc8347b0c09536e1133bca241358f7p@chr15:69075220..69075232, -
1.77e-102FFCP PHASE2:Hg19::chr17:58247963..58247970,-#_3cbc8347b0c09536e1133bca241358f7p@chr17:58247963..58247970, -
1.77e-102FFCP PHASE2:Hg19::chr1:198610136..198610143,+#_3cbc8347b0c09536e1133bca241358f7p@chr1:198610136..198610143, +
1.77e-102FFCP PHASE1:Hg19::chr20:48963128..48963163,+#_3cbc8347b0c09536e1133bca241358f7p@chr20:48963128..48963163, +
1.77e-102FFCP PHASE1:Hg19::chr1:198610136..198610143,+#_3cbc8347b0c09536e1133bca241358f7p@chr1:198610136..198610143, +
1.77e-102FFCP PHASE1:Hg19::chr11:75484913..75484923,+#_3cbc8347b0c09536e1133bca241358f7p@chr11:75484913..75484923, +
1.77e-102FFCP PHASE1:Hg19::chr17:58247963..58247970,-#_3cbc8347b0c09536e1133bca241358f7p@chr17:58247963..58247970, -
1.77e-102FFCP PHASE2:Hg19::chr21:46334376..46334408,+#_3cbc8347b0c09536e1133bca241358f7p@chr21:46334376..46334408, +
1.77e-102FFCP PHASE2:Hg19::chr1:159047469..159047474,+#_3cbc8347b0c09536e1133bca241358f7p@chr1:159047469..159047474, +
1.77e-102FFCP PHASE1:Hg19::chr1:159047469..159047474,+#_3cbc8347b0c09536e1133bca241358f7p@chr1:159047469..159047474, +
1.77e-102FFCP PHASE1:Hg19::chr2:70274580..70274587,-#_3cbc8347b0c09536e1133bca241358f7p@chr2:70274580..70274587, -
1.77e-102FFCP PHASE2:Hg19::chr20:4792540..4792567,+#_3cbc8347b0c09536e1133bca241358f7p@chr20:4792540..4792567, +
1.77e-102FFCP PHASE1:Hg19::chr21:35570914..35570921,+#_3cbc8347b0c09536e1133bca241358f7p@chr21:35570914..35570921, +
1.77e-102FFCP PHASE1:Hg19::chr11:75482683..75482690,-#_3cbc8347b0c09536e1133bca241358f7p@chr11:75482683..75482690, -
1.77e-102FFCP PHASE2:Hg19::chr8:133774445..133774459,+#_3cbc8347b0c09536e1133bca241358f7p@chr8:133774445..133774459, +
1.77e-102FFCP PHASE1:Hg19::chr21:46334376..46334408,+#_3cbc8347b0c09536e1133bca241358f7p@chr21:46334376..46334408, +
1.77e-102FFCP PHASE2:Hg19::chr21:35570914..35570921,+#_3cbc8347b0c09536e1133bca241358f7p@chr21:35570914..35570921, +
1.77e-102FFCP PHASE1:Hg19::chr21:42739014..42739023,+#_3cbc8347b0c09536e1133bca241358f7p@chr21:42739014..42739023, +
1.77e-102FFCP PHASE2:Hg19::chr11:75484913..75484923,+#_3cbc8347b0c09536e1133bca241358f7p@chr11:75484913..75484923, +
1.77e-102FFCP PHASE2:Hg19::chr15:80189589..80189598,+#_3cbc8347b0c09536e1133bca241358f7p@chr15:80189589..80189598, +
1.77e-102FFCP PHASE2:Hg19::chr2:70246087..70246098,-#_3cbc8347b0c09536e1133bca241358f7p@chr2:70246087..70246098, -
2.19e-102FFCP PHASE1:Hg19::chr11:1865774..1865782,+#_f0484a24c3ed945f8d01afd4d2d2eef2p@chr11:1865774..1865782, +
2.19e-102FFCP PHASE2:Hg19::chr11:1865774..1865782,+#_f0484a24c3ed945f8d01afd4d2d2eef2p@chr11:1865774..1865782, +
2.19e-102FFCP PHASE2:Hg19::chr2:103039663..103039672,+#_f0484a24c3ed945f8d01afd4d2d2eef2p6@IL18RAP
2.19e-102FFCP PHASE1:Hg19::chr2:103039663..103039672,+#_f0484a24c3ed945f8d01afd4d2d2eef2p6@IL18RAP
1.5e-100FFCP PHASE2:Hg19::chr11:15601676..15601684,-#_1abd72802dd7a11cecf93fc53dc73736p@chr11:15601676..15601684, -
1.5e-100FFCP PHASE1:Hg19::chr11:15601676..15601684,-#_1abd72802dd7a11cecf93fc53dc73736p@chr11:15601676..15601684, -
4.2e-99FFCP PHASE1:Hg19::chr2:136971977..136971986,-#_d939fb6c3136a88e1c03abbea62062f8p@chr2:136971977..136971986, -
4.2e-99FFCP PHASE2:Hg19::chr2:136971977..136971986,-#_d939fb6c3136a88e1c03abbea62062f8p@chr2:136971977..136971986, -
1.03e-98FFCP PHASE2:Hg19::chr3:129546717..129546727,-#_463c34a6dcfd4d59effe77127658a578p29@TMCC1
1.03e-98FFCP PHASE1:Hg19::chr14:88468930..88468934,-#_463c34a6dcfd4d59effe77127658a578p@chr14:88468930..88468934, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0000094&oldid=3275189"