Personal tools

Difference between revisions of "CL:0000173"

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{CL |id=CL:0000173 |name=pancreatic D cell |namespace=cell |def="A D cell located in the pancreas. Peripherally placed within the islets like type A cells; contains somat...")
 
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
{{CL
 
{{CL
|id=CL:0000173
+
|alt_id=
|name=pancreatic D cell
 
|namespace=cell
 
|def="A D cell located in the pancreas. Peripherally placed within the islets like type A cells; contains somatostatin." [FMA:0517223651, GOC:tfm]
 
|xref=BTO:0000803;;FMA:70587
 
|is_a=CL:0000502
 
|synonym="D-cell of pancreatic islet" EXACT [];;"Delta cell of islet" EXACT [];;"Delta cell of pancreatic islet" EXACT [];;"Pancreatic D-cell" EXACT [];;"Pancreatic delta cell" EXACT [];;"pancreatic delta cell" EXACT [];;"Somatostatin-secreting pancreatic cell" EXACT []
 
 
|comment=
 
|comment=
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def="A D cell located in the pancreas. Peripherally placed within the islets like type A cells; contains somatostatin." [FMA:0517223651, GOC:tfm]
|subset=
 
|adjacent_to=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=CL:0002351
 
|develops_from=CL:0002351
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=CL:0000173
 +
|is_a=CL:0000083 ;;CL:0000502
 +
|is_obsolete=
 
|located_in=
 
|located_in=
|part_of=
+
|name=pancreatic D cell
 +
|namespace=FANTOM
 +
|obo_creation_date=
 +
|part_of=UBERON:0001264;;UBERON:0000006;;UBERON:0001264
 +
|preceded_by=
 +
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
 +
|subset=
 +
|synonym="D-cell of pancreatic islet" EXACT [];;"delta cell of islet" EXACT [];;"delta cell of pancreatic islet" EXACT [];;"pancreatic D-cell" EXACT [];;"pancreatic delta cell" EXACT [];;"somatostatin-secreting pancreatic cell" EXACT []
 +
|union_of=
 +
|xref=BTO:0000803;;FMA:70587
 
}}
 
}}

Latest revision as of 07:31, 12 September 2014

Name:pancreatic D cell
Namespace:FANTOM
Definition:"A D cell located in the pancreas. Peripherally placed within the islets like type A cells; contains somatostatin." [FMA:0517223651, GOC:tfm]
Xrefs:
links:

BTO:0000803

FMA:70587
Synonyms: "D-cell of pancreatic islet" EXACT []
"delta cell of islet" EXACT []
"delta cell of pancreatic islet" EXACT []
"pancreatic D-cell" EXACT []
"pancreatic delta cell" EXACT []
"somatostatin-secreting pancreatic cell" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000083(epithelial cell of pancreas),CL:0000502(type D enteroendocrine cell)
develops_from:CL:0002351(progenitor cell of endocrine pancreas)
part_of:UBERON:0001264(pancreas),UBERON:0000006(islet of Langerhans),UBERON:0001264(pancreas)



Children


is a:FF:10781-110G7 (somatostatinoma cell line:QGP-1)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000173 (pancreatic D cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr10:120200137..120200154,+#_979440b5f02d0251696bd3392c4c2f1bp@chr10:120200137..120200154, +
5.42e-195FFCP PHASE1:Hg19::chr1:193232079..193232084,+#_979440b5f02d0251696bd3392c4c2f1bp@chr1:193232079..193232084, +
5.42e-195FFCP PHASE1:Hg19::chr18:56815879..56815901,+#_979440b5f02d0251696bd3392c4c2f1bp@chr18:56815879..56815901, +
5.42e-195FFCP PHASE2:Hg19::chr1:193232079..193232084,+#_979440b5f02d0251696bd3392c4c2f1bp@chr1:193232079..193232084, +
5.42e-195FFCP PHASE1:Hg19::chr6:50692244..50692251,+#_979440b5f02d0251696bd3392c4c2f1bp@chr6:50692244..50692251, +
5.42e-195FFCP PHASE1:Hg19::chr12:70464665..70464668,+#_979440b5f02d0251696bd3392c4c2f1bp@chr12:70464665..70464668, +
5.42e-195FFCP PHASE1:Hg19::chr9:96678236..96678246,-#_979440b5f02d0251696bd3392c4c2f1bp@chr9:96678236..96678246, -
5.42e-195FFCP PHASE2:Hg19::chr6:50692244..50692251,+#_979440b5f02d0251696bd3392c4c2f1bp@chr6:50692244..50692251, +
5.42e-195FFCP PHASE2:Hg19::chr12:70464665..70464668,+#_979440b5f02d0251696bd3392c4c2f1bp@chr12:70464665..70464668, +
5.42e-195FFCP PHASE2:Hg19::chr18:56815879..56815901,+#_979440b5f02d0251696bd3392c4c2f1bp@chr18:56815879..56815901, +
5.42e-195FFCP PHASE1:Hg19::chr1:193232144..193232147,+#_979440b5f02d0251696bd3392c4c2f1bp@chr1:193232144..193232147, +
5.42e-195FFCP PHASE1:Hg19::chr9:77257468..77257474,-#_979440b5f02d0251696bd3392c4c2f1bp@chr9:77257468..77257474, -
5.42e-195FFCP PHASE2:Hg19::chr9:96678236..96678246,-#_979440b5f02d0251696bd3392c4c2f1bp@chr9:96678236..96678246, -
5.42e-195FFCP PHASE1:Hg19::chr20:20173664..20173680,+#_979440b5f02d0251696bd3392c4c2f1bp@chr20:20173664..20173680, +
5.42e-195FFCP PHASE1:Hg19::chr1:193186161..193186169,-#_979440b5f02d0251696bd3392c4c2f1bp@chr1:193186161..193186169, -
5.42e-195FFCP PHASE2:Hg19::chr9:77257468..77257474,-#_979440b5f02d0251696bd3392c4c2f1bp@chr9:77257468..77257474, -
5.42e-195FFCP PHASE2:Hg19::chr1:193232144..193232147,+#_979440b5f02d0251696bd3392c4c2f1bp@chr1:193232144..193232147, +
5.42e-195FFCP PHASE2:Hg19::chr20:20173664..20173680,+#_979440b5f02d0251696bd3392c4c2f1bp@chr20:20173664..20173680, +
5.42e-195FFCP PHASE1:Hg19::chr10:120200137..120200154,+#_979440b5f02d0251696bd3392c4c2f1bp@chr10:120200137..120200154, +
5.42e-195FFCP PHASE2:Hg19::chr1:193186161..193186169,-#_979440b5f02d0251696bd3392c4c2f1bp@chr1:193186161..193186169, -
9.37e-99FFCP PHASE1:Hg19::chr18:56813724..56813731,+#_73ca67628e2a909bbb92a023342283adp@chr18:56813724..56813731, +
9.37e-99FFCP PHASE1:Hg19::chr4:139208173..139208199,-#_73ca67628e2a909bbb92a023342283adp@chr4:139208173..139208199, -
9.37e-99FFCP PHASE2:Hg19::chr1:193186195..193186210,-#_73ca67628e2a909bbb92a023342283adp@chr1:193186195..193186210, -
9.37e-99FFCP PHASE2:Hg19::chr12:70464593..70464598,+#_73ca67628e2a909bbb92a023342283adp@chr12:70464593..70464598, +
9.37e-99FFCP PHASE2:Hg19::chr4:139208173..139208199,-#_73ca67628e2a909bbb92a023342283adp@chr4:139208173..139208199, -
9.37e-99FFCP PHASE1:Hg19::chr18:7955271..7955280,+#_73ca67628e2a909bbb92a023342283adp@chr18:7955271..7955280, +
9.37e-99FFCP PHASE1:Hg19::chr1:193232096..193232117,+#_73ca67628e2a909bbb92a023342283adp@chr1:193232096..193232117, +
9.37e-99FFCP PHASE1:Hg19::chr9:77257424..77257435,-#_73ca67628e2a909bbb92a023342283adp@chr9:77257424..77257435, -
9.37e-99FFCP PHASE1:Hg19::chr4:173014804..173014812,+#_73ca67628e2a909bbb92a023342283adp@chr4:173014804..173014812, +
9.37e-99FFCP PHASE1:Hg19::chr6:154858221..154858224,-#_73ca67628e2a909bbb92a023342283adp@chr6:154858221..154858224, -
9.37e-99FFCP PHASE2:Hg19::chr18:56813724..56813731,+#_73ca67628e2a909bbb92a023342283adp@chr18:56813724..56813731, +
9.37e-99FFCP PHASE1:Hg19::chr6:161970049..161970057,-#_73ca67628e2a909bbb92a023342283adp3@GU361471
9.37e-99FFCP PHASE2:Hg19::chr9:77257424..77257435,-#_73ca67628e2a909bbb92a023342283adp@chr9:77257424..77257435, -
9.37e-99FFCP PHASE2:Hg19::chr1:193232096..193232117,+#_73ca67628e2a909bbb92a023342283adp@chr1:193232096..193232117, +
9.37e-99FFCP PHASE2:Hg19::chr6:154858221..154858224,-#_73ca67628e2a909bbb92a023342283adp@chr6:154858221..154858224, -
9.37e-99FFCP PHASE1:Hg19::chr12:70464675..70464680,+#_73ca67628e2a909bbb92a023342283adp@chr12:70464675..70464680, +
9.37e-99FFCP PHASE2:Hg19::chr4:173014804..173014812,+#_73ca67628e2a909bbb92a023342283adp@chr4:173014804..173014812, +
9.37e-99FFCP PHASE1:Hg19::chr6:154858237..154858245,-#_73ca67628e2a909bbb92a023342283adp@chr6:154858237..154858245, -
9.37e-99FFCP PHASE2:Hg19::chr6:161970049..161970057,-#_73ca67628e2a909bbb92a023342283adp3@GU361471
9.37e-99FFCP PHASE2:Hg19::chr12:70464675..70464680,+#_73ca67628e2a909bbb92a023342283adp@chr12:70464675..70464680, +
9.37e-99FFCP PHASE2:Hg19::chr18:7955271..7955280,+#_73ca67628e2a909bbb92a023342283adp@chr18:7955271..7955280, +
9.37e-99FFCP PHASE2:Hg19::chr6:154858237..154858245,-#_73ca67628e2a909bbb92a023342283adp@chr6:154858237..154858245, -
9.37e-99FFCP PHASE1:Hg19::chr4:59982412..59982425,+#_73ca67628e2a909bbb92a023342283adp@chr4:59982412..59982425, +
9.37e-99FFCP PHASE1:Hg19::chr1:193186195..193186210,-#_73ca67628e2a909bbb92a023342283adp@chr1:193186195..193186210, -
9.37e-99FFCP PHASE1:Hg19::chr12:70464593..70464598,+#_73ca67628e2a909bbb92a023342283adp@chr12:70464593..70464598, +
9.37e-99FFCP PHASE2:Hg19::chr4:59982412..59982425,+#_73ca67628e2a909bbb92a023342283adp@chr4:59982412..59982425, +
2.55e-98FFCP PHASE2:Hg19::chr6:132980338..132980346,-#_fdb00b92d33f4ca01b4b8461e4ef4518p@chr6:132980338..132980346, -
2.55e-98FFCP PHASE1:Hg19::chr13:93508642..93508652,-#_fdb00b92d33f4ca01b4b8461e4ef4518p@chr13:93508642..93508652, -
2.55e-98FFCP PHASE1:Hg19::chr1:110661599..110661609,-#_fdb00b92d33f4ca01b4b8461e4ef4518p@chr1:110661599..110661609, -
2.55e-98FFCP PHASE1:Hg19::chr18:56816249..56816258,+#_fdb00b92d33f4ca01b4b8461e4ef4518p@chr18:56816249..56816258, +
2.55e-98FFCP PHASE2:Hg19::chr13:93508642..93508652,-#_fdb00b92d33f4ca01b4b8461e4ef4518p@chr13:93508642..93508652, -
2.55e-98FFCP PHASE2:Hg19::chr1:110661599..110661609,-#_fdb00b92d33f4ca01b4b8461e4ef4518p@chr1:110661599..110661609, -
2.55e-98FFCP PHASE2:Hg19::chr18:56816249..56816258,+#_fdb00b92d33f4ca01b4b8461e4ef4518p@chr18:56816249..56816258, +
2.55e-98FFCP PHASE1:Hg19::chr6:154858334..154858342,-#_fdb00b92d33f4ca01b4b8461e4ef4518p@chr6:154858334..154858342, -
2.55e-98FFCP PHASE2:Hg19::chr6:154858334..154858342,-#_fdb00b92d33f4ca01b4b8461e4ef4518p@chr6:154858334..154858342, -
2.55e-98FFCP PHASE1:Hg19::chr6:132980338..132980346,-#_fdb00b92d33f4ca01b4b8461e4ef4518p@chr6:132980338..132980346, -
1.23e-66FFCP PHASE2:Hg19::chr12:128108552..128108561,+#_705bc0482fb04ff542824f628e2257fcp1@ENST00000537470
1.23e-66FFCP PHASE2:Hg19::chr18:7955176..7955183,+#_705bc0482fb04ff542824f628e2257fcp@chr18:7955176..7955183, +
1.23e-66FFCP PHASE1:Hg19::chr12:70464652..70464662,+#_705bc0482fb04ff542824f628e2257fcp@chr12:70464652..70464662, +
1.23e-66FFCP PHASE2:Hg19::chr9:77257683..77257703,+#_705bc0482fb04ff542824f628e2257fcp@chr9:77257683..77257703, +
1.23e-66FFCP PHASE2:Hg19::chr1:110678228..110678236,+#_705bc0482fb04ff542824f628e2257fcp@chr1:110678228..110678236, +
1.23e-66FFCP PHASE2:Hg19::chr12:127385138..127385144,-#_705bc0482fb04ff542824f628e2257fcp@chr12:127385138..127385144, -
1.23e-66FFCP PHASE1:Hg19::chr19:7570269..7570273,+#_705bc0482fb04ff542824f628e2257fcp13@C19orf45
1.23e-66FFCP PHASE2:Hg19::chr12:70464652..70464662,+#_705bc0482fb04ff542824f628e2257fcp@chr12:70464652..70464662, +
1.23e-66FFCP PHASE2:Hg19::chr19:7570269..7570273,+#_705bc0482fb04ff542824f628e2257fcp13@C19orf45
1.23e-66FFCP PHASE1:Hg19::chr18:56815158..56815162,+#_705bc0482fb04ff542824f628e2257fcp@chr18:56815158..56815162, +
1.23e-66FFCP PHASE1:Hg19::chr1:110678110..110678115,+#_705bc0482fb04ff542824f628e2257fcp@chr1:110678110..110678115, +
1.23e-66FFCP PHASE1:Hg19::chr18:7955176..7955183,+#_705bc0482fb04ff542824f628e2257fcp@chr18:7955176..7955183, +
1.23e-66FFCP PHASE2:Hg19::chr1:110678110..110678115,+#_705bc0482fb04ff542824f628e2257fcp@chr1:110678110..110678115, +
1.23e-66FFCP PHASE1:Hg19::chr12:128108552..128108561,+#_705bc0482fb04ff542824f628e2257fcp1@ENST00000537470
1.23e-66FFCP PHASE2:Hg19::chr18:56815158..56815162,+#_705bc0482fb04ff542824f628e2257fcp@chr18:56815158..56815162, +
1.23e-66FFCP PHASE1:Hg19::chr1:110678228..110678236,+#_705bc0482fb04ff542824f628e2257fcp@chr1:110678228..110678236, +
1.23e-66FFCP PHASE1:Hg19::chr12:127385138..127385144,-#_705bc0482fb04ff542824f628e2257fcp@chr12:127385138..127385144, -
1.23e-66FFCP PHASE1:Hg19::chr9:77257683..77257703,+#_705bc0482fb04ff542824f628e2257fcp@chr9:77257683..77257703, +
2.39e-66FFCP PHASE2:Hg19::chr5:104246731..104246738,-#_762aa68cb60146fd5a9dcf4dc4bfcb47p3@ENST00000524336
2.39e-66FFCP PHASE1:Hg19::chr7:120381641..120381650,+#_762aa68cb60146fd5a9dcf4dc4bfcb47p@chr7:120381641..120381650, +
2.39e-66FFCP PHASE1:Hg19::chr1:165198157..165198181,-#_762aa68cb60146fd5a9dcf4dc4bfcb47p@chr1:165198157..165198181, -
2.39e-66FFCP PHASE2:Hg19::chr7:120381641..120381650,+#_762aa68cb60146fd5a9dcf4dc4bfcb47p@chr7:120381641..120381650, +
2.39e-66FFCP PHASE2:Hg19::chr1:165198157..165198181,-#_762aa68cb60146fd5a9dcf4dc4bfcb47p@chr1:165198157..165198181, -
2.39e-66FFCP PHASE1:Hg19::chr15:92459318..92459327,+#_762aa68cb60146fd5a9dcf4dc4bfcb47p@chr15:92459318..92459327, +
2.39e-66FFCP PHASE1:Hg19::chr13:93587956..93587973,+#_762aa68cb60146fd5a9dcf4dc4bfcb47p@chr13:93587956..93587973, +
2.39e-66FFCP PHASE1:Hg19::chr18:56816267..56816276,+#_762aa68cb60146fd5a9dcf4dc4bfcb47p@chr18:56816267..56816276, +
2.39e-66FFCP PHASE1:Hg19::chr12:128077388..128077416,+#_762aa68cb60146fd5a9dcf4dc4bfcb47p@chr12:128077388..128077416, +
2.39e-66FFCP PHASE2:Hg19::chr13:93587956..93587973,+#_762aa68cb60146fd5a9dcf4dc4bfcb47p@chr13:93587956..93587973, +
2.39e-66FFCP PHASE1:Hg19::chr4:3310694..3310716,-#_762aa68cb60146fd5a9dcf4dc4bfcb47p@chr4:3310694..3310716, -
2.39e-66FFCP PHASE1:Hg19::chr2:159855059..159855068,-#_762aa68cb60146fd5a9dcf4dc4bfcb47p@chr2:159855059..159855068, -
2.39e-66FFCP PHASE2:Hg19::chr15:92459318..92459327,+#_762aa68cb60146fd5a9dcf4dc4bfcb47p@chr15:92459318..92459327, +
2.39e-66FFCP PHASE1:Hg19::chr5:77683792..77683799,+#_762aa68cb60146fd5a9dcf4dc4bfcb47p@chr5:77683792..77683799, +
2.39e-66FFCP PHASE2:Hg19::chr12:128077388..128077416,+#_762aa68cb60146fd5a9dcf4dc4bfcb47p@chr12:128077388..128077416, +
2.39e-66FFCP PHASE1:Hg19::chr5:104246731..104246738,-#_762aa68cb60146fd5a9dcf4dc4bfcb47p3@ENST00000524336
2.39e-66FFCP PHASE2:Hg19::chr4:3310694..3310716,-#_762aa68cb60146fd5a9dcf4dc4bfcb47p@chr4:3310694..3310716, -
2.39e-66FFCP PHASE2:Hg19::chr5:77683792..77683799,+#_762aa68cb60146fd5a9dcf4dc4bfcb47p@chr5:77683792..77683799, +
2.39e-66FFCP PHASE2:Hg19::chr2:159855059..159855068,-#_762aa68cb60146fd5a9dcf4dc4bfcb47p@chr2:159855059..159855068, -
2.39e-66FFCP PHASE2:Hg19::chr18:56816267..56816276,+#_762aa68cb60146fd5a9dcf4dc4bfcb47p@chr18:56816267..56816276, +
4.66e-66FFCP PHASE2:Hg19::chr14:101165430..101165451,-#_44c43f50b7b0374dea2b1c8344947a27p@chr14:101165430..101165451, -
4.66e-66FFCP PHASE1:Hg19::chr7:100807523..100807543,+#_44c43f50b7b0374dea2b1c8344947a27p@chr7:100807523..100807543, +
4.66e-66FFCP PHASE1:Hg19::chr19:51412411..51412426,-#_44c43f50b7b0374dea2b1c8344947a27p4@KLK4
4.66e-66FFCP PHASE1:Hg19::chr20:11077086..11077098,+#_44c43f50b7b0374dea2b1c8344947a27p@chr20:11077086..11077098, +
4.66e-66FFCP PHASE2:Hg19::chr7:100807523..100807543,+#_44c43f50b7b0374dea2b1c8344947a27p@chr7:100807523..100807543, +
4.66e-66FFCP PHASE2:Hg19::chr19:51412411..51412426,-#_44c43f50b7b0374dea2b1c8344947a27p4@KLK4