Personal tools

CL:0000199: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:0000199
|alt_id=
|name=mechanoreceptor cell
|namespace=cell
|def="A cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system." [MESH:A.08.800.550.700.500]
|xref=
|is_a=CL:0000006
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system." [MESH:A.08.800.550.700.500]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000199
|is_a=CL:0000101
|is_obsolete=
|located_in=
|located_in=
|name=mechanoreceptor cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:31, 12 September 2014

Name:mechanoreceptor cell
Namespace:FANTOM
Definition:"A cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system." [MESH:A.08.800.550.700.500]


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000101(sensory neuron)



Children


is a:CL:0000855 (sensory hair cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)

Mouse (Mus musculus)

  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000199 (mechanoreceptor cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.07e-86FFCP PHASE2:Mm9::chr5:72652671..72652676,+#_226491ab2d1222970ccaee28dec49830p@chr5:72652671..72652676, +
3.07e-86FFCP PHASE1:Mm9::chr4:106770202..106770208,+#_226491ab2d1222970ccaee28dec49830p@chr4:106770202..106770208, +
3.07e-86FFCP PHASE1:Mm9::chr19:10535924..10535927,-#_226491ab2d1222970ccaee28dec49830p@chr19:10535924..10535927, -
3.07e-86FFCP PHASE2:Mm9::chr2:142906965..142906982,-#_226491ab2d1222970ccaee28dec49830p@chr2:142906965..142906982, -
3.07e-86FFCP PHASE1:Mm9::chr13:31171742..31171745,-#_226491ab2d1222970ccaee28dec49830p@chr13:31171742..31171745, -
3.07e-86FFCP PHASE1:Mm9::chr17:34185343..34185356,+#_226491ab2d1222970ccaee28dec49830p7@Col11a2
3.07e-86FFCP PHASE1:Mm9::chr6:83129695..83129696,+#_226491ab2d1222970ccaee28dec49830p24@Dctn1
3.07e-86FFCP PHASE1:Mm9::chr10:18246142..18246145,+#_226491ab2d1222970ccaee28dec49830p@chr10:18246142..18246145, +
3.07e-86FFCP PHASE1:Mm9::chr9:92087990..92087995,+#_226491ab2d1222970ccaee28dec49830p3@Plscr5
3.07e-86FFCP PHASE1:Mm9::chr11:114652018..114652020,+#_226491ab2d1222970ccaee28dec49830p@chr11:114652018..114652020, +
3.07e-86FFCP PHASE2:Mm9::chr6:36966723..36966734,-#_226491ab2d1222970ccaee28dec49830p@chr6:36966723..36966734, -
3.07e-86FFCP PHASE2:Mm9::chr9:92087990..92087995,+#_226491ab2d1222970ccaee28dec49830p3@Plscr5
3.07e-86FFCP PHASE2:Mm9::chr17:34185389..34185401,+#_226491ab2d1222970ccaee28dec49830p8@Col11a2
3.07e-86FFCP PHASE1:Mm9::chr15:97828021..97828028,-#_226491ab2d1222970ccaee28dec49830p@chr15:97828021..97828028, -
3.07e-86FFCP PHASE1:Mm9::chr8:94283075..94283082,+#_226491ab2d1222970ccaee28dec49830p@chr8:94283075..94283082, +
3.07e-86FFCP PHASE2:Mm9::chr11:94371110..94371111,-#_226491ab2d1222970ccaee28dec49830p@chr11:94371110..94371111, -
3.07e-86FFCP PHASE2:Mm9::chr3:127520184..127520191,-#_226491ab2d1222970ccaee28dec49830p@chr3:127520184..127520191, -
3.07e-86FFCP PHASE1:Mm9::chr2:12032746..12032751,-#_226491ab2d1222970ccaee28dec49830p@chr2:12032746..12032751, -
3.07e-86FFCP PHASE2:Mm9::chr6:83129695..83129696,+#_226491ab2d1222970ccaee28dec49830p24@Dctn1
3.07e-86FFCP PHASE2:Mm9::chr17:15466888..15466898,-#_226491ab2d1222970ccaee28dec49830p@chr17:15466888..15466898, -
3.07e-86FFCP PHASE2:Mm9::chr2:142907424..142907448,-#_226491ab2d1222970ccaee28dec49830p@chr2:142907424..142907448, -
3.07e-86FFCP PHASE1:Mm9::chr6:64684505..64684512,+#_226491ab2d1222970ccaee28dec49830p@chr6:64684505..64684512, +
3.07e-86FFCP PHASE1:Mm9::chr17:34185362..34185370,+#_226491ab2d1222970ccaee28dec49830p10@Col11a2
3.07e-86FFCP PHASE2:Mm9::chr11:114652018..114652020,+#_226491ab2d1222970ccaee28dec49830p@chr11:114652018..114652020, +
3.07e-86FFCP PHASE1:Mm9::chr2:180335744..180335746,+#_226491ab2d1222970ccaee28dec49830p@chr2:180335744..180335746, +
3.07e-86FFCP PHASE1:Mm9::chr17:15466888..15466898,-#_226491ab2d1222970ccaee28dec49830p@chr17:15466888..15466898, -
3.07e-86FFCP PHASE1:Mm9::chr5:72652671..72652676,+#_226491ab2d1222970ccaee28dec49830p@chr5:72652671..72652676, +
3.07e-86FFCP PHASE2:Mm9::chr6:36966993..36966996,-#_226491ab2d1222970ccaee28dec49830p@chr6:36966993..36966996, -
3.07e-86FFCP PHASE1:Mm9::chr6:36966723..36966734,-#_226491ab2d1222970ccaee28dec49830p@chr6:36966723..36966734, -
3.07e-86FFCP PHASE2:Mm9::chr9:87599703..87599714,-#_226491ab2d1222970ccaee28dec49830p@chr9:87599703..87599714, -
3.07e-86FFCP PHASE1:Mm9::chr3:127520184..127520191,-#_226491ab2d1222970ccaee28dec49830p@chr3:127520184..127520191, -
3.07e-86FFCP PHASE2:Mm9::chr6:64684505..64684512,+#_226491ab2d1222970ccaee28dec49830p@chr6:64684505..64684512, +
3.07e-86FFCP PHASE2:Mm9::chr8:94283075..94283082,+#_226491ab2d1222970ccaee28dec49830p@chr8:94283075..94283082, +
3.07e-86FFCP PHASE1:Mm9::chr9:87599703..87599714,-#_226491ab2d1222970ccaee28dec49830p@chr9:87599703..87599714, -
3.07e-86FFCP PHASE2:Mm9::chr17:34185343..34185356,+#_226491ab2d1222970ccaee28dec49830p7@Col11a2
3.07e-86FFCP PHASE1:Mm9::chr17:34185378..34185383,+#_226491ab2d1222970ccaee28dec49830p11@Col11a2
3.07e-86FFCP PHASE2:Mm9::chr15:91379135..91379143,-#_226491ab2d1222970ccaee28dec49830p@chr15:91379135..91379143, -
3.07e-86FFCP PHASE1:Mm9::chr2:142906965..142906982,-#_226491ab2d1222970ccaee28dec49830p@chr2:142906965..142906982, -
3.07e-86FFCP PHASE2:Mm9::chr19:10535924..10535927,-#_226491ab2d1222970ccaee28dec49830p@chr19:10535924..10535927, -
3.07e-86FFCP PHASE1:Mm9::chr11:94371110..94371111,-#_226491ab2d1222970ccaee28dec49830p@chr11:94371110..94371111, -
3.07e-86FFCP PHASE1:Mm9::chr2:53464193..53464197,+#_226491ab2d1222970ccaee28dec49830p@chr2:53464193..53464197, +
3.07e-86FFCP PHASE1:Mm9::chr6:36966993..36966996,-#_226491ab2d1222970ccaee28dec49830p@chr6:36966993..36966996, -
3.07e-86FFCP PHASE2:Mm9::chr18:66033513..66033517,-#_226491ab2d1222970ccaee28dec49830p@chr18:66033513..66033517, -
3.07e-86FFCP PHASE2:Mm9::chr2:53464193..53464197,+#_226491ab2d1222970ccaee28dec49830p@chr2:53464193..53464197, +
3.07e-86FFCP PHASE2:Mm9::chr4:106770202..106770208,+#_226491ab2d1222970ccaee28dec49830p@chr4:106770202..106770208, +
3.07e-86FFCP PHASE2:Mm9::chr6:64684637..64684654,+#_226491ab2d1222970ccaee28dec49830p@chr6:64684637..64684654, +
3.07e-86FFCP PHASE1:Mm9::chr6:64684637..64684654,+#_226491ab2d1222970ccaee28dec49830p@chr6:64684637..64684654, +
3.07e-86FFCP PHASE2:Mm9::chr2:12032746..12032751,-#_226491ab2d1222970ccaee28dec49830p@chr2:12032746..12032751, -
3.07e-86FFCP PHASE1:Mm9::chr18:66033513..66033517,-#_226491ab2d1222970ccaee28dec49830p@chr18:66033513..66033517, -
3.07e-86FFCP PHASE2:Mm9::chr17:34185362..34185370,+#_226491ab2d1222970ccaee28dec49830p10@Col11a2
3.07e-86FFCP PHASE1:Mm9::chr17:34185389..34185401,+#_226491ab2d1222970ccaee28dec49830p8@Col11a2
3.07e-86FFCP PHASE1:Mm9::chr2:142907424..142907448,-#_226491ab2d1222970ccaee28dec49830p@chr2:142907424..142907448, -
3.07e-86FFCP PHASE1:Mm9::chr15:91379135..91379143,-#_226491ab2d1222970ccaee28dec49830p@chr15:91379135..91379143, -
3.07e-86FFCP PHASE2:Mm9::chr16:55283394..55283400,-#_226491ab2d1222970ccaee28dec49830p1@Zpld1
3.07e-86FFCP PHASE2:Mm9::chr13:31171742..31171745,-#_226491ab2d1222970ccaee28dec49830p@chr13:31171742..31171745, -
3.07e-86FFCP PHASE2:Mm9::chr15:97828021..97828028,-#_226491ab2d1222970ccaee28dec49830p@chr15:97828021..97828028, -
3.07e-86FFCP PHASE2:Mm9::chr6:64684692..64684697,+#_226491ab2d1222970ccaee28dec49830p@chr6:64684692..64684697, +
3.07e-86FFCP PHASE1:Mm9::chr6:64684692..64684697,+#_226491ab2d1222970ccaee28dec49830p@chr6:64684692..64684697, +
3.07e-86FFCP PHASE2:Mm9::chr2:180335744..180335746,+#_226491ab2d1222970ccaee28dec49830p@chr2:180335744..180335746, +
3.07e-86FFCP PHASE1:Mm9::chr16:55283394..55283400,-#_226491ab2d1222970ccaee28dec49830p1@Zpld1
3.07e-86FFCP PHASE2:Mm9::chr10:18246142..18246145,+#_226491ab2d1222970ccaee28dec49830p@chr10:18246142..18246145, +
3.07e-86FFCP PHASE2:Mm9::chr17:34185378..34185383,+#_226491ab2d1222970ccaee28dec49830p11@Col11a2
2.74e-44FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_1144a0c613541f30449e34f02cb67b7cp@chr10:67371994..67372010, +
2.74e-44FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_1144a0c613541f30449e34f02cb67b7cp2@Otof
2.74e-44FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_1144a0c613541f30449e34f02cb67b7cp@chr15:85334335..85334353, +
2.74e-44FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_1144a0c613541f30449e34f02cb67b7cp@chr2:73232344..73232356, -
2.74e-44FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_1144a0c613541f30449e34f02cb67b7cp@chr8:13414266..13414279, +
2.74e-44FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_1144a0c613541f30449e34f02cb67b7cp1@Kcna10
2.74e-44FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_1144a0c613541f30449e34f02cb67b7cp@chr6:113251606..113251613, +
2.74e-44FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_1144a0c613541f30449e34f02cb67b7cp@chr14:47293496..47293510, -
2.74e-44FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_1144a0c613541f30449e34f02cb67b7cp@chr13:43699228..43699239, +
2.74e-44FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_1144a0c613541f30449e34f02cb67b7cp@chr1:182528371..182528385, +
2.74e-44FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_1144a0c613541f30449e34f02cb67b7cp41@Cacnb2
2.74e-44FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_1144a0c613541f30449e34f02cb67b7cp@chr1:60561636..60561645, -
2.74e-44FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_1144a0c613541f30449e34f02cb67b7cp@chr1:172843885..172843890, -
2.74e-44FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_1144a0c613541f30449e34f02cb67b7cp@chr14:20649897..20649907, +
2.74e-44FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_1144a0c613541f30449e34f02cb67b7cp@chr2:75320183..75320189, +
2.74e-44FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_1144a0c613541f30449e34f02cb67b7cp@chr1:172843885..172843890, -
2.74e-44FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_1144a0c613541f30449e34f02cb67b7cp@chr19:10536797..10536802, -
2.74e-44FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_1144a0c613541f30449e34f02cb67b7cp@chr1:93235228..93235249, +
2.74e-44FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_1144a0c613541f30449e34f02cb67b7cp@chr12:109905399..109905416, +
2.74e-44FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_1144a0c613541f30449e34f02cb67b7cp1@Strc
2.74e-44FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_1144a0c613541f30449e34f02cb67b7cp@chrX:154140781..154140788, +
2.74e-44FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_1144a0c613541f30449e34f02cb67b7cp@chr11:89702580..89702593, -
2.74e-44FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_1144a0c613541f30449e34f02cb67b7cp@chr13:37195838..37195870, -
2.74e-44FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_1144a0c613541f30449e34f02cb67b7cp5@BC030867
2.74e-44FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_1144a0c613541f30449e34f02cb67b7cp9@Ankrd24
2.74e-44FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_1144a0c613541f30449e34f02cb67b7cp5@Fer1l6
2.74e-44FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_1144a0c613541f30449e34f02cb67b7cp@chr12:109905468..109905474, +
2.74e-44FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_1144a0c613541f30449e34f02cb67b7cp@chr11:75421384..75421397, +
2.74e-44FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_1144a0c613541f30449e34f02cb67b7cp4@Gipc3
2.74e-44FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_1144a0c613541f30449e34f02cb67b7cp4@Gipc3
2.74e-44FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_1144a0c613541f30449e34f02cb67b7cp@chr4:154208086..154208123, +
2.74e-44FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_1144a0c613541f30449e34f02cb67b7cp@chr14:63099970..63099980, -
2.74e-44FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_1144a0c613541f30449e34f02cb67b7cp@chr5:28035962..28035983, +
2.74e-44FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_1144a0c613541f30449e34f02cb67b7cp2@Tomt
2.74e-44FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_1144a0c613541f30449e34f02cb67b7cp2@Gpr152
2.74e-44FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_1144a0c613541f30449e34f02cb67b7cp@chr15:89215333..89215341, +
2.74e-44FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_1144a0c613541f30449e34f02cb67b7cp@chr17:13983198..13983203, +
2.74e-44FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_1144a0c613541f30449e34f02cb67b7cp@chr5:72652660..72652667, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0000199&oldid=3275229"