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{{CL
 
{{CL
|id=CL:0000541
+
|alt_id=
|name=melanoblast
 
|namespace=cell
 
|def="A cell that originates from the neural crest and differentiates into a pigment cell." [GOC:tfm, SANBI:mhl]
 
|xref=BTO:0003217;;FMA:83377
 
|is_a=CL:0000055;;CL:0000710
 
|synonym=
 
 
|comment=Derived from UBERON:0002342 neural crest.
 
|comment=Derived from UBERON:0002342 neural crest.
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def="A cell that originates from the neural crest and differentiates into a pigment cell." [GOC:tfm, SANBI:mhl]
|subset=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=CL:0000333
 
|develops_from=CL:0000333
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=CL:0000541
 +
|is_a=CL:0000055 ;;CL:0000710
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=melanoblast
 +
|namespace=FANTOM
 +
|obo_creation_date=
 
|part_of=
 
|part_of=
 +
|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
+
|subset=
|preceded_by=
+
|synonym=
 +
|union_of=
 +
|xref=BTO:0003217;;FMA:83377
 
}}
 
}}

Latest revision as of 07:34, 12 September 2014

Name:melanoblast
Namespace:FANTOM
Definition:"A cell that originates from the neural crest and differentiates into a pigment cell." [GOC:tfm, SANBI:mhl]
Xrefs:
links:

BTO:0003217

FMA:83377
Comments:Derived from UBERON:0002342 neural crest.


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000055(non-terminally differentiated cell),CL:0000710(neurecto-epithelial cell)
develops_from:CL:0000333(migratory neural crest cell)



Children


develops from:CL:0000148 (melanocyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000541 (melanoblast), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
3.89e-139FFCP PHASE1:Hg19::chrX:9707625..9707629,-#_865a8d92404f9d2fd116626c4434d80cp6@GPR143
3.89e-139FFCP PHASE2:Hg19::chrX:9707625..9707629,-#_865a8d92404f9d2fd116626c4434d80cp6@GPR143
5.38e-137FFCP PHASE1:Hg19::chr9:12693291..12693298,+#_94ba3276404c7f5c64eacce1daff1aeap33@TYRP1
5.38e-137FFCP PHASE2:Hg19::chr1:1497497..1497523,-#_94ba3276404c7f5c64eacce1daff1aeap1@AK129493
5.38e-137FFCP PHASE2:Hg19::chr9:12708060..12708071,-#_94ba3276404c7f5c64eacce1daff1aeap@chr9:12708060..12708071, -
5.38e-137FFCP PHASE1:Hg19::chr9:12709332..12709345,+#_94ba3276404c7f5c64eacce1daff1aeap@chr9:12709332..12709345, +
5.38e-137FFCP PHASE1:Hg19::chr1:154401791..154401807,+#_94ba3276404c7f5c64eacce1daff1aeap11@IL6R
5.38e-137FFCP PHASE1:Hg19::chr9:12708060..12708071,-#_94ba3276404c7f5c64eacce1daff1aeap@chr9:12708060..12708071, -
5.38e-137FFCP PHASE1:Hg19::chr9:12702367..12702377,+#_94ba3276404c7f5c64eacce1daff1aeap@chr9:12702367..12702377, +
5.38e-137FFCP PHASE1:Hg19::chr16:89986251..89986268,+#_94ba3276404c7f5c64eacce1daff1aeap@chr16:89986251..89986268, +
5.38e-137FFCP PHASE2:Hg19::chr9:12693291..12693298,+#_94ba3276404c7f5c64eacce1daff1aeap33@TYRP1
5.38e-137FFCP PHASE2:Hg19::chr19:3557867..3557877,-#_94ba3276404c7f5c64eacce1daff1aeap7@MFSD12
5.38e-137FFCP PHASE1:Hg19::chr19:3557867..3557877,-#_94ba3276404c7f5c64eacce1daff1aeap7@MFSD12
5.38e-137FFCP PHASE2:Hg19::chr16:89986251..89986268,+#_94ba3276404c7f5c64eacce1daff1aeap@chr16:89986251..89986268, +
5.38e-137FFCP PHASE2:Hg19::chr1:154401791..154401807,+#_94ba3276404c7f5c64eacce1daff1aeap11@IL6R
5.38e-137FFCP PHASE1:Hg19::chr9:12695585..12695593,+#_94ba3276404c7f5c64eacce1daff1aeap24@TYRP1
5.38e-137FFCP PHASE2:Hg19::chr9:12709332..12709345,+#_94ba3276404c7f5c64eacce1daff1aeap@chr9:12709332..12709345, +
5.38e-137FFCP PHASE2:Hg19::chr9:12695585..12695593,+#_94ba3276404c7f5c64eacce1daff1aeap24@TYRP1
5.38e-137FFCP PHASE2:Hg19::chr9:12708978..12708990,+#_94ba3276404c7f5c64eacce1daff1aeap@chr9:12708978..12708990, +
5.38e-137FFCP PHASE1:Hg19::chr1:1497497..1497523,-#_94ba3276404c7f5c64eacce1daff1aeap1@AK129493
5.38e-137FFCP PHASE1:Hg19::chr9:12708978..12708990,+#_94ba3276404c7f5c64eacce1daff1aeap@chr9:12708978..12708990, +
5.38e-137FFCP PHASE2:Hg19::chr9:12702367..12702377,+#_94ba3276404c7f5c64eacce1daff1aeap@chr9:12702367..12702377, +
5.38e-137FFCP PHASE1:Hg19::chr6:4610902..4610913,+#_94ba3276404c7f5c64eacce1daff1aeap1@ENST00000380106
5.38e-137FFCP PHASE2:Hg19::chr6:4610902..4610913,+#_94ba3276404c7f5c64eacce1daff1aeap1@ENST00000380106
3.56e-120FFCP PHASE1:Hg19::chr1:1497528..1497559,-#_5dd959a93d153f3eb337d3041dc1e163p2@AK129493
3.56e-120FFCP PHASE2:Hg19::chr1:1497528..1497559,-#_5dd959a93d153f3eb337d3041dc1e163p2@AK129493
3.56e-120FFCP PHASE2:Hg19::chr19:3557918..3557927,-#_5dd959a93d153f3eb337d3041dc1e163p8@MFSD12
3.56e-120FFCP PHASE1:Hg19::chr19:3557918..3557927,-#_5dd959a93d153f3eb337d3041dc1e163p8@MFSD12
4.24e-120FFCP PHASE2:Hg19::chr9:12693559..12693562,+#_8b3764f035f8dc96de6958441a4d52bfp22@TYRP1
4.24e-120FFCP PHASE2:Hg19::chr9:12704349..12704362,+#_8b3764f035f8dc96de6958441a4d52bfp@chr9:12704349..12704362, +
4.24e-120FFCP PHASE1:Hg19::chr5:159894810..159894819,+#_8b3764f035f8dc96de6958441a4d52bfp12@uc003lyl.3
4.24e-120FFCP PHASE1:Hg19::chr9:12701182..12701196,+#_8b3764f035f8dc96de6958441a4d52bfp19@TYRP1
4.24e-120FFCP PHASE1:Hg19::chr9:12704349..12704362,+#_8b3764f035f8dc96de6958441a4d52bfp@chr9:12704349..12704362, +
4.24e-120FFCP PHASE2:Hg19::chr9:12708011..12708027,+#_8b3764f035f8dc96de6958441a4d52bfp27@TYRP1
4.24e-120FFCP PHASE2:Hg19::chr5:159894810..159894819,+#_8b3764f035f8dc96de6958441a4d52bfp12@uc003lyl.3
4.24e-120FFCP PHASE2:Hg19::chr9:12701182..12701196,+#_8b3764f035f8dc96de6958441a4d52bfp19@TYRP1
4.24e-120FFCP PHASE1:Hg19::chr9:12693559..12693562,+#_8b3764f035f8dc96de6958441a4d52bfp22@TYRP1
4.24e-120FFCP PHASE1:Hg19::chr9:12708011..12708027,+#_8b3764f035f8dc96de6958441a4d52bfp27@TYRP1
5.06e-120FFCP PHASE1:Hg19::chr9:12704539..12704547,+#_8e7b9a18b8f6f02cd4053f5bef809b15p@chr9:12704539..12704547, +
5.06e-120FFCP PHASE1:Hg19::chr15:28344426..28344431,-#_8e7b9a18b8f6f02cd4053f5bef809b15p2@OCA2
5.06e-120FFCP PHASE2:Hg19::chr15:28344426..28344431,-#_8e7b9a18b8f6f02cd4053f5bef809b15p2@OCA2
5.06e-120FFCP PHASE2:Hg19::chr9:12704539..12704547,+#_8e7b9a18b8f6f02cd4053f5bef809b15p@chr9:12704539..12704547, +
6.04e-120FFCP PHASE1:Hg19::chr9:12695674..12695681,+#_e1672fe1789bc18c17ac0c08f7583bbep36@TYRP1
6.04e-120FFCP PHASE2:Hg19::chr9:12695674..12695681,+#_e1672fe1789bc18c17ac0c08f7583bbep36@TYRP1
7.21e-120FFCP PHASE1:Hg19::chr12:56351078..56351092,-#_009edf9f1e74e27593f2a6dfe4395212-, p@chr12:56351078..56351092
7.21e-120FFCP PHASE2:Hg19::chr12:56351078..56351092,-#_009edf9f1e74e27593f2a6dfe4395212p@chr12:56351078..56351092, -
1.29e-117FFCP PHASE1:Hg19::chr3:69951861..69951868,+#_4b09a31dd9030735c5f05f90460f8fa6p@chr3:69951861..69951868, +
1.29e-117FFCP PHASE1:Hg19::chr22:20878094..20878105,+#_4b09a31dd9030735c5f05f90460f8fa6p41@MED15
1.29e-117FFCP PHASE1:Hg19::chr1:212594718..212594723,+#_4b09a31dd9030735c5f05f90460f8fa6p@chr1:212594718..212594723, +
1.29e-117FFCP PHASE2:Hg19::chr1:212594718..212594723,+#_4b09a31dd9030735c5f05f90460f8fa6p@chr1:212594718..212594723, +
1.29e-117FFCP PHASE1:Hg19::chr1:1497566..1497576,-#_4b09a31dd9030735c5f05f90460f8fa6p3@AK129493
1.29e-117FFCP PHASE2:Hg19::chr2:128400821..128400830,-#_4b09a31dd9030735c5f05f90460f8fa6p39@LIMS2
1.29e-117FFCP PHASE1:Hg19::chr9:12709019..12709029,+#_4b09a31dd9030735c5f05f90460f8fa6p@chr9:12709019..12709029, +
1.29e-117FFCP PHASE2:Hg19::chr9:12709200..12709209,+#_4b09a31dd9030735c5f05f90460f8fa6p@chr9:12709200..12709209, +
1.29e-117FFCP PHASE2:Hg19::chr17:77925869..77925876,-#_4b09a31dd9030735c5f05f90460f8fa6p@chr17:77925869..77925876, -
1.29e-117FFCP PHASE1:Hg19::chr2:128400821..128400830,-#_4b09a31dd9030735c5f05f90460f8fa6p39@LIMS2
1.29e-117FFCP PHASE2:Hg19::chr9:12704666..12704671,+#_4b09a31dd9030735c5f05f90460f8fa6p@chr9:12704666..12704671, +
1.29e-117FFCP PHASE2:Hg19::chr9:12701691..12701717,+#_4b09a31dd9030735c5f05f90460f8fa6p34@TYRP1
1.29e-117FFCP PHASE1:Hg19::chr17:77925869..77925876,-#_4b09a31dd9030735c5f05f90460f8fa6p@chr17:77925869..77925876, -
1.29e-117FFCP PHASE2:Hg19::chr1:1497566..1497576,-#_4b09a31dd9030735c5f05f90460f8fa6p3@AK129493
1.29e-117FFCP PHASE1:Hg19::chr15:28360793..28360804,-#_4b09a31dd9030735c5f05f90460f8fa6p@chr15:28360793..28360804, -
1.29e-117FFCP PHASE2:Hg19::chr15:28360793..28360804,-#_4b09a31dd9030735c5f05f90460f8fa6p@chr15:28360793..28360804, -
1.29e-117FFCP PHASE1:Hg19::chr11:48066945..48066951,+#_4b09a31dd9030735c5f05f90460f8fa6p@chr11:48066945..48066951, +
1.29e-117FFCP PHASE2:Hg19::chr17:77923816..77923828,-#_4b09a31dd9030735c5f05f90460f8fa6p@chr17:77923816..77923828, -
1.29e-117FFCP PHASE2:Hg19::chr3:69951861..69951868,+#_4b09a31dd9030735c5f05f90460f8fa6p@chr3:69951861..69951868, +
1.29e-117FFCP PHASE1:Hg19::chr1:1497446..1497455,-#_4b09a31dd9030735c5f05f90460f8fa6p4@AK129493
1.29e-117FFCP PHASE1:Hg19::chr11:2920857..2920864,+#_4b09a31dd9030735c5f05f90460f8fa6p13@SLC22A18
1.29e-117FFCP PHASE2:Hg19::chr22:20878094..20878105,+#_4b09a31dd9030735c5f05f90460f8fa6p41@MED15
1.29e-117FFCP PHASE2:Hg19::chr15:42694665..42694671,+#_4b09a31dd9030735c5f05f90460f8fa6p16@CAPN3
1.29e-117FFCP PHASE2:Hg19::chr11:48066945..48066951,+#_4b09a31dd9030735c5f05f90460f8fa6p@chr11:48066945..48066951, +
1.29e-117FFCP PHASE2:Hg19::chr9:12709019..12709029,+#_4b09a31dd9030735c5f05f90460f8fa6p@chr9:12709019..12709029, +
1.29e-117FFCP PHASE2:Hg19::chr11:2920857..2920864,+#_4b09a31dd9030735c5f05f90460f8fa6p13@SLC22A18
1.29e-117FFCP PHASE1:Hg19::chr6:4610888..4610895,+#_4b09a31dd9030735c5f05f90460f8fa6p2@ENST00000380106
1.29e-117FFCP PHASE1:Hg19::chr9:12704666..12704671,+#_4b09a31dd9030735c5f05f90460f8fa6p@chr9:12704666..12704671, +
1.29e-117FFCP PHASE1:Hg19::chr9:12701691..12701717,+#_4b09a31dd9030735c5f05f90460f8fa6p34@TYRP1
1.29e-117FFCP PHASE1:Hg19::chr15:28360857..28360860,-#_4b09a31dd9030735c5f05f90460f8fa6p@chr15:28360857..28360860, -
1.29e-117FFCP PHASE2:Hg19::chr6:4610888..4610895,+#_4b09a31dd9030735c5f05f90460f8fa6p2@ENST00000380106
1.29e-117FFCP PHASE2:Hg19::chr15:28360857..28360860,-#_4b09a31dd9030735c5f05f90460f8fa6p@chr15:28360857..28360860, -
1.29e-117FFCP PHASE1:Hg19::chr17:77923816..77923828,-#_4b09a31dd9030735c5f05f90460f8fa6p@chr17:77923816..77923828, -
1.29e-117FFCP PHASE1:Hg19::chr15:42694665..42694671,+#_4b09a31dd9030735c5f05f90460f8fa6p16@CAPN3
1.29e-117FFCP PHASE2:Hg19::chr1:1497446..1497455,-#_4b09a31dd9030735c5f05f90460f8fa6p4@AK129493
1.29e-117FFCP PHASE2:Hg19::chr19:3557800..3557811,-#_4b09a31dd9030735c5f05f90460f8fa6p9@MFSD12
1.29e-117FFCP PHASE1:Hg19::chr19:3557800..3557811,-#_4b09a31dd9030735c5f05f90460f8fa6p9@MFSD12
1.29e-117FFCP PHASE1:Hg19::chr9:12709200..12709209,+#_4b09a31dd9030735c5f05f90460f8fa6p@chr9:12709200..12709209, +
4.33e-107FFCP PHASE2:Hg19::chr17:77924675..77924686,-#_63da569741197e1ea7474c802d866c4dp3@TBC1D16
4.33e-107FFCP PHASE2:Hg19::chr9:12702379..12702409,+#_63da569741197e1ea7474c802d866c4dp@chr9:12702379..12702409, +
4.33e-107FFCP PHASE2:Hg19::chr22:20878024..20878053,+#_63da569741197e1ea7474c802d866c4dp16@MED15
4.33e-107FFCP PHASE1:Hg19::chr17:77924675..77924686,-#_63da569741197e1ea7474c802d866c4dp3@TBC1D16
4.33e-107FFCP PHASE1:Hg19::chr9:12702379..12702409,+#_63da569741197e1ea7474c802d866c4dp@chr9:12702379..12702409, +
4.33e-107FFCP PHASE1:Hg19::chr9:12698593..12698608,+#_63da569741197e1ea7474c802d866c4dp20@TYRP1
4.33e-107FFCP PHASE1:Hg19::chr9:12694022..12694033,+#_63da569741197e1ea7474c802d866c4dp15@TYRP1
4.33e-107FFCP PHASE2:Hg19::chr9:12702314..12702344,+#_63da569741197e1ea7474c802d866c4dp@chr9:12702314..12702344, +
4.33e-107FFCP PHASE1:Hg19::chr22:20878024..20878053,+#_63da569741197e1ea7474c802d866c4dp16@MED15
4.33e-107FFCP PHASE2:Hg19::chr9:12698593..12698608,+#_63da569741197e1ea7474c802d866c4dp20@TYRP1
4.33e-107FFCP PHASE2:Hg19::chr9:12694022..12694033,+#_63da569741197e1ea7474c802d866c4dp15@TYRP1
4.33e-107FFCP PHASE1:Hg19::chr9:5892516..5892527,+#_63da569741197e1ea7474c802d866c4dp3@MLANA
4.33e-107FFCP PHASE2:Hg19::chr9:5892516..5892527,+#_63da569741197e1ea7474c802d866c4dp3@MLANA
4.33e-107FFCP PHASE1:Hg19::chr9:12702314..12702344,+#_63da569741197e1ea7474c802d866c4dp@chr9:12702314..12702344, +
5.07e-107FFCP PHASE1:Hg19::chr9:5897549..5897564,+#_344e1002ebaf4321c8a89dbde18064a2p4@MLANA
5.07e-107FFCP PHASE2:Hg19::chr9:5897549..5897564,+#_344e1002ebaf4321c8a89dbde18064a2p4@MLANA