Personal tools

CL:0000550: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:0000550
|alt_id=
|name=polychromatophilic erythroblast
|namespace=cell;;efo
|def="A nucleated, immature erythrocyte in which the nucleus occupies a relatively smaller part of the cell than in its precursor, the basophilic erythroblast. The cytoplasm is beginning to acquire hemoglobin and thus is no longer a purely basophilic, but takes on acidophilic aspects, which becomes progressively more marked as the cell matures. The chromatin of the nucleus is arranged in coarse, deeply staining clumps. This cell is CD71-positive and lacks hematopoeitic lineage markers." [ISBN:0721601464]
|xref=FMA:83506
|is_a=CL:0000765
|synonym="intermediate erythroblast" EXACT [ISBN:0721601464];;"intermediate normoblast" EXACT [ISBN:0721601464];;"polychromatic erythroblast" EXACT [ISBN:0721601464];;"polychromatic normoblast" EXACT [ISBN:0721601464];;"polychromatophilic normoblast" EXACT [ISBN:0721601464];;"rubricyte" EXACT [ISBN:0721601464]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A nucleated, immature erythrocyte in which the nucleus occupies a relatively smaller part of the cell than in its precursor, the basophilic erythroblast. The cytoplasm is beginning to acquire hemoglobin and thus is no longer a purely basophilic, but takes on acidophilic aspects, which becomes progressively more marked as the cell matures. The chromatin of the nucleus is arranged in coarse, deeply staining clumps. This cell is CD71-positive and lacks hematopoeitic lineage markers." [ISBN:0721601464]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=CL:0000549
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000550
|is_a=CL:0000765
|is_obsolete=
|located_in=
|located_in=
|name=polychromatophilic erythroblast
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="intermediate erythroblast" EXACT [ISBN:0721601464];;"intermediate normoblast" EXACT [ISBN:0721601464];;"polychromatic erythroblast" EXACT [ISBN:0721601464];;"polychromatic normoblast" EXACT [ISBN:0721601464];;"polychromatophilic normoblast" EXACT [ISBN:0721601464];;"rubricyte" EXACT [ISBN:0721601464]
|union_of=
|xref=FMA:83506
}}
}}

Latest revision as of 16:34, 12 September 2014

Name:polychromatophilic erythroblast
Namespace:FANTOM
Definition:"A nucleated, immature erythrocyte in which the nucleus occupies a relatively smaller part of the cell than in its precursor, the basophilic erythroblast. The cytoplasm is beginning to acquire hemoglobin and thus is no longer a purely basophilic, but takes on acidophilic aspects, which becomes progressively more marked as the cell matures. The chromatin of the nucleus is arranged in coarse, deeply staining clumps. This cell is CD71-positive and lacks hematopoeitic lineage markers." [ISBN:0721601464]
Xrefs:
links:
FMA:83506
Synonyms: "intermediate erythroblast" EXACT [ISBN:0721601464]
"intermediate normoblast" EXACT [ISBN:0721601464]
"polychromatic erythroblast" EXACT [ISBN:0721601464]
"polychromatic normoblast" EXACT [ISBN:0721601464]
"polychromatophilic normoblast" EXACT [ISBN:0721601464]
"rubricyte" EXACT [ISBN:0721601464]


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000765(erythroblast)
develops_from:CL:0000549(basophilic erythroblast)



Children


develops from:CL:0000552 (orthochromatic erythroblast)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000550 (polychromatophilic erythroblast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE1:Hg19::chr11:5247730..5247736,-#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr11:5247730..5247736, -
3.29e-195FFCP PHASE1:Hg19::chr6:10585672..10585677,+#_fe6f0607366a70c91d6ab33b6d1b52d4p42@GCNT2
3.29e-195FFCP PHASE2:Hg19::chr9:138852021..138852030,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr9:138852021..138852030, +
3.29e-195FFCP PHASE1:Hg19::chr11:57415965..57415973,+#_fe6f0607366a70c91d6ab33b6d1b52d4p5@CLP1
3.29e-195FFCP PHASE1:Hg19::chr9:123853258..123853276,-#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr9:123853258..123853276, -
3.29e-195FFCP PHASE1:Hg19::chr16:15616042..15616045,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr16:15616042..15616045, +
3.29e-195FFCP PHASE1:Hg19::chr4:26378984..26378987,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr4:26378984..26378987, +
3.29e-195FFCP PHASE1:Hg19::chr3:49726589..49726592,+#_fe6f0607366a70c91d6ab33b6d1b52d4p7@RNF123
3.29e-195FFCP PHASE1:Hg19::chr17:27188395..27188398,-#_fe6f0607366a70c91d6ab33b6d1b52d4p1@MIR451A
3.29e-195FFCP PHASE2:Hg19::chr6:10585684..10585689,+#_fe6f0607366a70c91d6ab33b6d1b52d4p37@GCNT2
3.29e-195FFCP PHASE1:Hg19::chr13:78682773..78682778,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr13:78682773..78682778, +
3.29e-195FFCP PHASE2:Hg19::chr11:115492263..115492265,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr11:115492263..115492265, +
3.29e-195FFCP PHASE2:Hg19::chr11:66676050..66676060,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr11:66676050..66676060, +
3.29e-195FFCP PHASE2:Hg19::chr4:26378984..26378987,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr4:26378984..26378987, +
3.29e-195FFCP PHASE2:Hg19::chr3:49726589..49726592,+#_fe6f0607366a70c91d6ab33b6d1b52d4p7@RNF123
3.29e-195FFCP PHASE1:Hg19::chr2:112191654..112191660,-#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr2:112191654..112191660, -
3.29e-195FFCP PHASE2:Hg19::chr13:78682773..78682778,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr13:78682773..78682778, +
3.29e-195FFCP PHASE2:Hg19::chr2:112191654..112191660,-#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr2:112191654..112191660, -
3.29e-195FFCP PHASE1:Hg19::chr1:25598961..25598966,+#_fe6f0607366a70c91d6ab33b6d1b52d4p5@RHD
3.29e-195FFCP PHASE2:Hg19::chr14:55799575..55799582,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr14:55799575..55799582, +
3.29e-195FFCP PHASE1:Hg19::chr4:160049078..160049079,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr4:160049078..160049079, +
3.29e-195FFCP PHASE1:Hg19::chr14:96742091..96742094,-#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr14:96742091..96742094, -
3.29e-195FFCP PHASE2:Hg19::chr1:25598961..25598966,+#_fe6f0607366a70c91d6ab33b6d1b52d4p5@RHD
3.29e-195FFCP PHASE2:Hg19::chr16:227522..227524,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr16:227522..227524, +
3.29e-195FFCP PHASE1:Hg19::chr6:10585684..10585689,+#_fe6f0607366a70c91d6ab33b6d1b52d4p37@GCNT2
3.29e-195FFCP PHASE1:Hg19::chr15:71406717..71406718,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr15:71406717..71406718, +
3.29e-195FFCP PHASE1:Hg19::chr8:101412217..101412218,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr8:101412217..101412218, +
3.29e-195FFCP PHASE1:Hg19::chr17:42366115..42366125,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr17:42366115..42366125, +
3.29e-195FFCP PHASE2:Hg19::chr4:160049078..160049079,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr4:160049078..160049079, +
3.29e-195FFCP PHASE1:Hg19::chr10:94679592..94679594,-#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr10:94679592..94679594, -
3.29e-195FFCP PHASE1:Hg19::chr6:50700492..50700495,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr6:50700492..50700495, +
3.29e-195FFCP PHASE2:Hg19::chr8:101412217..101412218,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr8:101412217..101412218, +
3.29e-195FFCP PHASE1:Hg19::chr9:45465498..45465501,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr9:45465498..45465501, +
3.29e-195FFCP PHASE1:Hg19::chrX:107332036..107332041,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chrX:107332036..107332041, +
3.29e-195FFCP PHASE2:Hg19::chr6:50700492..50700495,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr6:50700492..50700495, +
3.29e-195FFCP PHASE2:Hg19::chr9:45465498..45465501,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr9:45465498..45465501, +
3.29e-195FFCP PHASE2:Hg19::chrX:107332036..107332041,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chrX:107332036..107332041, +
3.29e-195FFCP PHASE1:Hg19::chr3:49726593..49726603,+#_fe6f0607366a70c91d6ab33b6d1b52d4p4@RNF123
3.29e-195FFCP PHASE2:Hg19::chr3:49726593..49726603,+#_fe6f0607366a70c91d6ab33b6d1b52d4p4@RNF123
3.29e-195FFCP PHASE1:Hg19::chr17:42343955..42343974,-#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr17:42343955..42343974, -
3.29e-195FFCP PHASE1:Hg19::chr1:207823590..207823599,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr1:207823590..207823599, +
3.29e-195FFCP PHASE1:Hg19::chr13:23969126..23969130,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr13:23969126..23969130, +
3.29e-195FFCP PHASE2:Hg19::chr10:86596455..86596456,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr10:86596455..86596456, +
3.29e-195FFCP PHASE2:Hg19::chr1:207823590..207823599,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr1:207823590..207823599, +
3.29e-195FFCP PHASE1:Hg19::chr1:2250692..2250695,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr1:2250692..2250695, +
3.29e-195FFCP PHASE2:Hg19::chr20:24432163..24432165,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr20:24432163..24432165, +
3.29e-195FFCP PHASE1:Hg19::chr1:25598971..25598977,+#_fe6f0607366a70c91d6ab33b6d1b52d4p4@RHD
3.29e-195FFCP PHASE2:Hg19::chr1:2250692..2250695,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr1:2250692..2250695, +
3.29e-195FFCP PHASE2:Hg19::chr18:11740276..11740278,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr18:11740276..11740278, +
3.29e-195FFCP PHASE2:Hg19::chr13:23969126..23969130,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr13:23969126..23969130, +
3.29e-195FFCP PHASE2:Hg19::chr1:25598971..25598977,+#_fe6f0607366a70c91d6ab33b6d1b52d4p4@RHD
3.29e-195FFCP PHASE2:Hg19::chr11:5247692..5247701,-#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr11:5247692..5247701, -
3.29e-195FFCP PHASE1:Hg19::chr11:115492263..115492265,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr11:115492263..115492265, +
3.29e-195FFCP PHASE1:Hg19::chr17:42392517..42392522,+#_fe6f0607366a70c91d6ab33b6d1b52d4p17@RUNDC3A
3.29e-195FFCP PHASE1:Hg19::chr11:57416011..57416016,+#_fe6f0607366a70c91d6ab33b6d1b52d4p9@CLP1
3.29e-195FFCP PHASE1:Hg19::chr2:62801311..62801318,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr2:62801311..62801318, +
3.29e-195FFCP PHASE1:Hg19::chr2:87816262..87816269,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr2:87816262..87816269, +
3.29e-195FFCP PHASE1:Hg19::chr13:106256314..106256318,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr13:106256314..106256318, +
3.29e-195FFCP PHASE1:Hg19::chr22:30680245..30680254,-#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr22:30680245..30680254, -
3.29e-195FFCP PHASE1:Hg19::chr12:131245491..131245492,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr12:131245491..131245492, +
3.29e-195FFCP PHASE2:Hg19::chr11:5255612..5255613,-#_fe6f0607366a70c91d6ab33b6d1b52d4p10@HBD
3.29e-195FFCP PHASE1:Hg19::chr16:67228546..67228549,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr16:67228546..67228549, +
3.29e-195FFCP PHASE2:Hg19::chr2:62801311..62801318,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr2:62801311..62801318, +
3.29e-195FFCP PHASE1:Hg19::chr8:138915590..138915591,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr8:138915590..138915591, +
3.29e-195FFCP PHASE1:Hg19::chr21:27203678..27203684,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr21:27203678..27203684, +
3.29e-195FFCP PHASE2:Hg19::chr11:57415965..57415973,+#_fe6f0607366a70c91d6ab33b6d1b52d4p5@CLP1
3.29e-195FFCP PHASE2:Hg19::chr2:87816262..87816269,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr2:87816262..87816269, +
3.29e-195FFCP PHASE2:Hg19::chr11:29581179..29581180,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr11:29581179..29581180, +
3.29e-195FFCP PHASE2:Hg19::chr22:30680245..30680254,-#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr22:30680245..30680254, -
3.29e-195FFCP PHASE1:Hg19::chr20:24432163..24432165,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr20:24432163..24432165, +
3.29e-195FFCP PHASE2:Hg19::chr8:138915590..138915591,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr8:138915590..138915591, +
3.29e-195FFCP PHASE2:Hg19::chr21:27203678..27203684,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr21:27203678..27203684, +
3.29e-195FFCP PHASE2:Hg19::chr7:23205190..23205198,+#_fe6f0607366a70c91d6ab33b6d1b52d4p10@KLHL7
3.29e-195FFCP PHASE2:Hg19::chr13:106256314..106256318,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr13:106256314..106256318, +
3.29e-195FFCP PHASE2:Hg19::chr17:27188395..27188398,-#_fe6f0607366a70c91d6ab33b6d1b52d4p1@MIR451A
3.29e-195FFCP PHASE1:Hg19::chr8:63838198..63838201,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr8:63838198..63838201, +
3.29e-195FFCP PHASE2:Hg19::chr8:63838198..63838201,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr8:63838198..63838201, +
3.29e-195FFCP PHASE1:Hg19::chr1:95582484..95582492,+#_fe6f0607366a70c91d6ab33b6d1b52d4p10@TMEM56
3.29e-195FFCP PHASE1:Hg19::chr1:25598993..25599007,+#_fe6f0607366a70c91d6ab33b6d1b52d4p1@RHD
3.29e-195FFCP PHASE2:Hg19::chr11:5248435..5248444,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr11:5248435..5248444, +
3.29e-195FFCP PHASE1:Hg19::chr1:220146675..220146678,-#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr1:220146675..220146678, -
3.29e-195FFCP PHASE2:Hg19::chr16:15616042..15616045,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr16:15616042..15616045, +
3.29e-195FFCP PHASE1:Hg19::chr12:75560876..75560881,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr12:75560876..75560881, +
3.29e-195FFCP PHASE2:Hg19::chr1:95582484..95582492,+#_fe6f0607366a70c91d6ab33b6d1b52d4p10@TMEM56
3.29e-195FFCP PHASE1:Hg19::chr16:227522..227524,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr16:227522..227524, +
3.29e-195FFCP PHASE2:Hg19::chr6:10585661..10585670,+#_fe6f0607366a70c91d6ab33b6d1b52d4p26@GCNT2
3.29e-195FFCP PHASE2:Hg19::chr1:25598993..25599007,+#_fe6f0607366a70c91d6ab33b6d1b52d4p1@RHD
3.29e-195FFCP PHASE2:Hg19::chr11:5247730..5247736,-#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr11:5247730..5247736, -
3.29e-195FFCP PHASE1:Hg19::chr19:1207927..1207939,-#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr19:1207927..1207939, -
3.29e-195FFCP PHASE1:Hg19::chr1:5543682..5543685,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr1:5543682..5543685, +
3.29e-195FFCP PHASE1:Hg19::chr7:23205190..23205198,+#_fe6f0607366a70c91d6ab33b6d1b52d4p10@KLHL7
3.29e-195FFCP PHASE1:Hg19::chr4:82805715..82805717,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr4:82805715..82805717, +
3.29e-195FFCP PHASE2:Hg19::chr19:1207927..1207939,-#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr19:1207927..1207939, -
3.29e-195FFCP PHASE2:Hg19::chr17:42366115..42366125,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr17:42366115..42366125, +
3.29e-195FFCP PHASE1:Hg19::chr6:155472342..155472346,-#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr6:155472342..155472346, -
3.29e-195FFCP PHASE2:Hg19::chr1:220146675..220146678,-#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr1:220146675..220146678, -
3.29e-195FFCP PHASE2:Hg19::chr1:5543682..5543685,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr1:5543682..5543685, +
3.29e-195FFCP PHASE2:Hg19::chr12:75560876..75560881,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr12:75560876..75560881, +
3.29e-195FFCP PHASE1:Hg19::chr10:86596455..86596456,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr10:86596455..86596456, +
3.29e-195FFCP PHASE2:Hg19::chr4:82805715..82805717,+#_fe6f0607366a70c91d6ab33b6d1b52d4p@chr4:82805715..82805717, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0000550&oldid=3275299"