CL:0000668: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0000668
|name=parenchymal cell
|namespace=cell
|def="The cell characteristic of an organ, as distinguished from associated connective or supporting tissues." [...") |
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|def="The cell characteristic of an organ, as distinguished from associated connective or supporting tissues." [ISBN:0471245208] | |def="The cell characteristic of an organ, as distinguished from associated connective or supporting tissues." [ISBN:0471245208] | ||
|xref=BTO:0002174;;FMA:84638 | |xref=BTO:0002174;;FMA:84638 | ||
|is_a=CL: | |is_a=CL:0000003 | ||
|synonym= | |synonym= | ||
|comment=cell type has a similar but slightly different meaning in botany (plants): see PO:0000074. | |comment=cell type has a similar but slightly different meaning in botany (plants): see PO:0000074. | ||
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|obo_creation_date= | |obo_creation_date= | ||
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|located_in= | |located_in= | ||
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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |||
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Latest revision as of 17:25, 26 June 2012
| Name: | parenchymal cell | ||
|---|---|---|---|
| Namespace: | cell | ||
| Definition: | "The cell characteristic of an organ, as distinguished from associated connective or supporting tissues." [ISBN:0471245208] | ||
| Xrefs: |
| ||
| Comments: | cell type has a similar but slightly different meaning in botany (plants): see PO:0000074. |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000003(native cell) |
|---|
Children
NA
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10484-107A7 (hepatoma cell line:Li-7)
- 10536-107G5 (cholangiocellular carcinoma cell line:HuH-28)
- 10629-108H8
- 10630-108H9
- 10632-108I2
- 10633-108I3 (hepatoblastoma cell line:HuH-6)
- 10706-109H4 (pleomorphic hepatocellular carcinoma cell line:SNU-387)
- 10746-110C8
- 10818-111B8 (hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1)
- 10819-111B9 (hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep2)
... further results Mouse (Mus musculus)
- 10484-107A7 (hepatoma cell line:Li-7)
- 10536-107G5 (cholangiocellular carcinoma cell line:HuH-28)
- 10629-108H8
- 10630-108H9
- 10632-108I2
- 10633-108I3 (hepatoblastoma cell line:HuH-6)
- 10706-109H4 (pleomorphic hepatocellular carcinoma cell line:SNU-387)
- 10746-110C8
- 10818-111B8 (hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1)
- 10819-111B9 (hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000668 (parenchymal cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results for this cluster
