Personal tools

Difference between revisions of "CL:0000786"

From FANTOM5_SSTAR

Jump to: navigation, search
Line 1: Line 1:
 
{{CL
 
{{CL
|id=CL:0000786
+
|alt_id=
|name=plasma cell
 
|namespace=cell;;efo
 
|def="A terminally differentiated, post-mitotic, antibody secreting cell of the B cell lineage with the phenotype CD138-positive, surface immunonoglobulin-negative, and MHC Class II-negative. Plasma cells are oval or round with extensive rough endoplasmic reticulum, a well-developed Golgi apparatus, and a round nucleus having a characteristic cartwheel heterochromatin pattern and are devoted to producing large amounts of immunoglobulin." [GO_REF:0000031, GOC:add, ISBN:0721601464, ISBN:0781735149]
 
|xref=BTO:0000392;;FMA:70574
 
|is_a=CL:0000151;;CL:0000946
 
|synonym="plasmacyte" EXACT []
 
 
|comment=
 
|comment=
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def="A terminally differentiated, post-mitotic, antibody secreting cell of the B cell lineage with the phenotype CD138-positive, surface immunonoglobulin-negative, and MHC Class II-negative. Plasma cells are oval or round with extensive rough endoplasmic reticulum, a well-developed Golgi apparatus, and a round nucleus having a characteristic cartwheel heterochromatin pattern and are devoted to producing large amounts of immunoglobulin." [GO_REF:0000031, GOC:add, ISBN:0721601464, ISBN:0781735149]
|subset=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=CL:0000980
 
|develops_from=CL:0000980
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=CL:0000786
 +
|is_a=CL:0000946
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=plasma cell
 +
|namespace=cell;;efo
 +
|obo_creation_date=
 
|part_of=
 
|part_of=
 +
|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
+
|subset=
|preceded_by=
+
|synonym="plasmacyte" EXACT []
 +
|union_of=
 +
|xref=BTO:0000392;;FMA:70574
 
}}
 
}}

Revision as of 01:21, 12 September 2014

Name:plasma cell
Namespace:cell;;efo
Definition:"A terminally differentiated, post-mitotic, antibody secreting cell of the B cell lineage with the phenotype CD138-positive, surface immunonoglobulin-negative, and MHC Class II-negative. Plasma cells are oval or round with extensive rough endoplasmic reticulum, a well-developed Golgi apparatus, and a round nucleus having a characteristic cartwheel heterochromatin pattern and are devoted to producing large amounts of immunoglobulin." [GO_REF:0000031, GOC:add, ISBN:0721601464, ISBN:0781735149]
Xrefs:
links:

BTO:0000392

FMA:70574
Synonyms: "plasmacyte" EXACT []


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000946(antibody secreting cell)
develops_from:CL:0000980(plasmablast)



Children


is a:FF:10840-111E3 (plasma cell leukemia cell line:ARH-77)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000786 (plasma cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr3:79363599..79363606,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr3:79363599..79363606, +
5.42e-195FFCP PHASE1:Hg19::chr12:40991131..40991149,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr12:40991131..40991149, +
5.42e-195FFCP PHASE2:Hg19::chr6:166581583..166581586,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr6:166581583..166581586, +
5.42e-195FFCP PHASE2:Hg19::chr6:164466441..164466449,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr6:164466441..164466449, +
5.42e-195FFCP PHASE1:Hg19::chr3:168236611..168236612,-#_325ec1d385ac84dbe8fe323bf05da8c1p@chr3:168236611..168236612, -
5.42e-195FFCP PHASE2:Hg19::chr21:20752389..20752420,-#_325ec1d385ac84dbe8fe323bf05da8c1p@chr21:20752389..20752420, -
5.42e-195FFCP PHASE1:Hg19::chr17:76471163..76471166,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr17:76471163..76471166, +
5.42e-195FFCP PHASE1:Hg19::chr14:106829914..106829921,-#_325ec1d385ac84dbe8fe323bf05da8c1p1@HM996258, p1@HM996415, p1@HM996438
5.42e-195FFCP PHASE1:Hg19::chr4:3881462..3881469,-#_325ec1d385ac84dbe8fe323bf05da8c1p@chr4:3881462..3881469, -
5.42e-195FFCP PHASE1:Hg19::chr6:164466441..164466449,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr6:164466441..164466449, +
5.42e-195FFCP PHASE1:Hg19::chr6:166581583..166581586,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr6:166581583..166581586, +
5.42e-195FFCP PHASE2:Hg19::chr21:20867728..20867731,-#_325ec1d385ac84dbe8fe323bf05da8c1p@chr21:20867728..20867731, -
5.42e-195FFCP PHASE2:Hg19::chr3:79363599..79363606,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr3:79363599..79363606, +
5.42e-195FFCP PHASE2:Hg19::chr1:17349654..17349690,-#_325ec1d385ac84dbe8fe323bf05da8c1p6@SDHB
5.42e-195FFCP PHASE2:Hg19::chr12:40991131..40991149,+#_325ec1d385ac84dbe8fe323bf05da8c1+, p@chr12:40991131..40991149
5.42e-195FFCP PHASE2:Hg19::chr2:77746775..77746779,-#_325ec1d385ac84dbe8fe323bf05da8c1p14@LRRTM4
5.42e-195FFCP PHASE1:Hg19::chr21:20752389..20752420,-#_325ec1d385ac84dbe8fe323bf05da8c1p@chr21:20752389..20752420, -
5.42e-195FFCP PHASE2:Hg19::chr4:3881462..3881469,-#_325ec1d385ac84dbe8fe323bf05da8c1p@chr4:3881462..3881469, -
5.42e-195FFCP PHASE2:Hg19::chr6:166581590..166581596,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr6:166581590..166581596, +
5.42e-195FFCP PHASE1:Hg19::chr3:168337915..168337930,-#_325ec1d385ac84dbe8fe323bf05da8c1p@chr3:168337915..168337930, -
5.42e-195FFCP PHASE2:Hg19::chr21:20752617..20752622,-#_325ec1d385ac84dbe8fe323bf05da8c1p@chr21:20752617..20752622, -
5.42e-195FFCP PHASE1:Hg19::chr21:20867728..20867731,-#_325ec1d385ac84dbe8fe323bf05da8c1p@chr21:20867728..20867731, -
5.42e-195FFCP PHASE2:Hg19::chr2:77581116..77581120,-#_325ec1d385ac84dbe8fe323bf05da8c1p@chr2:77581116..77581120, -
5.42e-195FFCP PHASE2:Hg19::chr10:56410468..56410499,-#_325ec1d385ac84dbe8fe323bf05da8c1p@chr10:56410468..56410499, -
5.42e-195FFCP PHASE1:Hg19::chr6:166581590..166581596,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr6:166581590..166581596, +
5.42e-195FFCP PHASE1:Hg19::chr12:40953942..40953946,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr12:40953942..40953946, +
5.42e-195FFCP PHASE2:Hg19::chr7:86415255..86415288,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr7:86415255..86415288, +
5.42e-195FFCP PHASE2:Hg19::chr3:168236611..168236612,-#_325ec1d385ac84dbe8fe323bf05da8c1p@chr3:168236611..168236612, -
5.42e-195FFCP PHASE1:Hg19::chr3:158747347..158747353,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr3:158747347..158747353, +
5.42e-195FFCP PHASE1:Hg19::chr21:20752617..20752622,-#_325ec1d385ac84dbe8fe323bf05da8c1p@chr21:20752617..20752622, -
5.42e-195FFCP PHASE1:Hg19::chr1:101853882..101853891,-#_325ec1d385ac84dbe8fe323bf05da8c1p@chr1:101853882..101853891, -
5.42e-195FFCP PHASE2:Hg19::chr1:101853882..101853891,-#_325ec1d385ac84dbe8fe323bf05da8c1p@chr1:101853882..101853891, -
5.42e-195FFCP PHASE2:Hg19::chr12:40953942..40953946,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr12:40953942..40953946, +
5.42e-195FFCP PHASE2:Hg19::chr5:88646759..88646764,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr5:88646759..88646764, +
5.42e-195FFCP PHASE2:Hg19::chr8:128270027..128270033,-#_325ec1d385ac84dbe8fe323bf05da8c1p@chr8:128270027..128270033, -
5.42e-195FFCP PHASE2:Hg19::chr3:178947187..178947192,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr3:178947187..178947192, +
5.42e-195FFCP PHASE1:Hg19::chr10:56410468..56410499,-#_325ec1d385ac84dbe8fe323bf05da8c1p@chr10:56410468..56410499, -
5.42e-195FFCP PHASE1:Hg19::chr5:88646759..88646764,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr5:88646759..88646764, +
5.42e-195FFCP PHASE1:Hg19::chr2:77746703..77746711,-#_325ec1d385ac84dbe8fe323bf05da8c1p9@LRRTM4
5.42e-195FFCP PHASE2:Hg19::chr3:168337915..168337930,-#_325ec1d385ac84dbe8fe323bf05da8c1p@chr3:168337915..168337930, -
5.42e-195FFCP PHASE2:Hg19::chr6:164466325..164466331,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr6:164466325..164466331, +
5.42e-195FFCP PHASE2:Hg19::chr3:6686484..6686491,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr3:6686484..6686491, +
5.42e-195FFCP PHASE2:Hg19::chr3:158747347..158747353,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr3:158747347..158747353, +
5.42e-195FFCP PHASE2:Hg19::chr17:76471146..76471155,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr17:76471146..76471155, +
5.42e-195FFCP PHASE1:Hg19::chr3:178947187..178947192,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr3:178947187..178947192, +
5.42e-195FFCP PHASE1:Hg19::chr6:164466325..164466331,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr6:164466325..164466331, +
5.42e-195FFCP PHASE1:Hg19::chr8:128270027..128270033,-#_325ec1d385ac84dbe8fe323bf05da8c1p@chr8:128270027..128270033, -
5.42e-195FFCP PHASE2:Hg19::chr6:166581265..166581274,-#_325ec1d385ac84dbe8fe323bf05da8c1p5@T
5.42e-195FFCP PHASE1:Hg19::chr7:86415255..86415288,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr7:86415255..86415288, +
5.42e-195FFCP PHASE2:Hg19::chr14:106829914..106829921,-#_325ec1d385ac84dbe8fe323bf05da8c1p1@HM996258, p1@HM996415, p1@HM996438
5.42e-195FFCP PHASE2:Hg19::chr17:76475275..76475285,-#_325ec1d385ac84dbe8fe323bf05da8c1p@chr17:76475275..76475285, -
5.42e-195FFCP PHASE1:Hg19::chr6:166581265..166581274,-#_325ec1d385ac84dbe8fe323bf05da8c1p5@T
5.42e-195FFCP PHASE1:Hg19::chr1:17349613..17349631,-#_325ec1d385ac84dbe8fe323bf05da8c1p8@SDHB
5.42e-195FFCP PHASE2:Hg19::chr5:114291872..114291873,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr5:114291872..114291873, +
5.42e-195FFCP PHASE1:Hg19::chr2:77746775..77746779,-#_325ec1d385ac84dbe8fe323bf05da8c1p14@LRRTM4
5.42e-195FFCP PHASE2:Hg19::chr6:164466345..164466352,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr6:164466345..164466352, +
5.42e-195FFCP PHASE2:Hg19::chr21:20747453..20747465,-#_325ec1d385ac84dbe8fe323bf05da8c1p@chr21:20747453..20747465, -
5.42e-195FFCP PHASE1:Hg19::chr5:114291872..114291873,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr5:114291872..114291873, +
5.42e-195FFCP PHASE1:Hg19::chr17:76471146..76471155,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr17:76471146..76471155, +
5.42e-195FFCP PHASE2:Hg19::chr17:76471163..76471166,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr17:76471163..76471166, +
5.42e-195FFCP PHASE1:Hg19::chr6:164466345..164466352,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr6:164466345..164466352, +
5.42e-195FFCP PHASE1:Hg19::chr3:6686484..6686491,+#_325ec1d385ac84dbe8fe323bf05da8c1p@chr3:6686484..6686491, +
5.42e-195FFCP PHASE2:Hg19::chr1:17349613..17349631,-#_325ec1d385ac84dbe8fe323bf05da8c1p8@SDHB
5.42e-195FFCP PHASE1:Hg19::chr2:77581116..77581120,-#_325ec1d385ac84dbe8fe323bf05da8c1p@chr2:77581116..77581120, -
5.42e-195FFCP PHASE2:Hg19::chr2:77746703..77746711,-#_325ec1d385ac84dbe8fe323bf05da8c1p9@LRRTM4
5.42e-195FFCP PHASE1:Hg19::chr21:20747453..20747465,-#_325ec1d385ac84dbe8fe323bf05da8c1p@chr21:20747453..20747465, -
5.42e-195FFCP PHASE1:Hg19::chr17:76475275..76475285,-#_325ec1d385ac84dbe8fe323bf05da8c1p@chr17:76475275..76475285, -
5.42e-195FFCP PHASE1:Hg19::chr1:17349654..17349690,-#_325ec1d385ac84dbe8fe323bf05da8c1p6@SDHB
9.37e-99FFCP PHASE1:Hg19::chr3:178261188..178261195,-#_ba7867af22b4fd1eeec292f126b55361p@chr3:178261188..178261195, -
9.37e-99FFCP PHASE2:Hg19::chr1:90962594..90962596,-#_ba7867af22b4fd1eeec292f126b55361-, p@chr1:90962594..90962596
9.37e-99FFCP PHASE1:Hg19::chr3:189839512..189839520,-#_ba7867af22b4fd1eeec292f126b55361p21@LEPREL1
9.37e-99FFCP PHASE1:Hg19::chr7:119999940..119999943,+#_ba7867af22b4fd1eeec292f126b55361p@chr7:119999940..119999943, +
9.37e-99FFCP PHASE2:Hg19::chr3:189839512..189839520,-#_ba7867af22b4fd1eeec292f126b55361p21@LEPREL1
9.37e-99FFCP PHASE2:Hg19::chr7:119999940..119999943,+#_ba7867af22b4fd1eeec292f126b55361p@chr7:119999940..119999943, +
9.37e-99FFCP PHASE2:Hg19::chr14:54342069..54342074,-#_ba7867af22b4fd1eeec292f126b55361p@chr14:54342069..54342074, -
9.37e-99FFCP PHASE1:Hg19::chr12:126922654..126922657,+#_ba7867af22b4fd1eeec292f126b55361p@chr12:126922654..126922657, +
9.37e-99FFCP PHASE2:Hg19::chr12:776344..776351,-#_ba7867af22b4fd1eeec292f126b55361p@chr12:776344..776351, -
9.37e-99FFCP PHASE1:Hg19::chr14:106586621..106586626,-#_ba7867af22b4fd1eeec292f126b55361p3@IGHV3-13
9.37e-99FFCP PHASE2:Hg19::chr18:28728570..28728577,-#_ba7867af22b4fd1eeec292f126b55361p@chr18:28728570..28728577, -
9.37e-99FFCP PHASE2:Hg19::chr14:102992396..102992401,+#_ba7867af22b4fd1eeec292f126b55361p@chr14:102992396..102992401, +
9.37e-99FFCP PHASE2:Hg19::chr14:106589870..106589873,-#_ba7867af22b4fd1eeec292f126b55361p@chr14:106589870..106589873, -
9.37e-99FFCP PHASE1:Hg19::chr2:157336503..157336506,-#_ba7867af22b4fd1eeec292f126b55361p@chr2:157336503..157336506, -
9.37e-99FFCP PHASE2:Hg19::chr6:166581392..166581398,+#_ba7867af22b4fd1eeec292f126b55361p@chr6:166581392..166581398, +
9.37e-99FFCP PHASE1:Hg19::chr2:101054417..101054453,+#_ba7867af22b4fd1eeec292f126b55361p@chr2:101054417..101054453, +
9.37e-99FFCP PHASE2:Hg19::chrX:18701132..18701138,-#_ba7867af22b4fd1eeec292f126b55361p@chrX:18701132..18701138, -
9.37e-99FFCP PHASE1:Hg19::chr6:166581392..166581398,+#_ba7867af22b4fd1eeec292f126b55361p@chr6:166581392..166581398, +
9.37e-99FFCP PHASE2:Hg19::chr19:36698672..36698675,-#_ba7867af22b4fd1eeec292f126b55361p@chr19:36698672..36698675, -
9.37e-99FFCP PHASE2:Hg19::chr6:166581221..166581226,-#_ba7867af22b4fd1eeec292f126b55361p8@T
9.37e-99FFCP PHASE2:Hg19::chr21:20752643..20752654,-#_ba7867af22b4fd1eeec292f126b55361p@chr21:20752643..20752654, -
9.37e-99FFCP PHASE1:Hg19::chrX:18701132..18701138,-#_ba7867af22b4fd1eeec292f126b55361p@chrX:18701132..18701138, -
9.37e-99FFCP PHASE2:Hg19::chr2:101054417..101054453,+#_ba7867af22b4fd1eeec292f126b55361p@chr2:101054417..101054453, +
9.37e-99FFCP PHASE1:Hg19::chr18:67696064..67696069,-#_ba7867af22b4fd1eeec292f126b55361p@chr18:67696064..67696069, -
9.37e-99FFCP PHASE1:Hg19::chr6:166581221..166581226,-#_ba7867af22b4fd1eeec292f126b55361p8@T
9.37e-99FFCP PHASE2:Hg19::chr5:114289920..114289928,+#_ba7867af22b4fd1eeec292f126b55361p@chr5:114289920..114289928, +
9.37e-99FFCP PHASE2:Hg19::chr6:166581393..166581398,-#_ba7867af22b4fd1eeec292f126b55361p6@T
9.37e-99FFCP PHASE1:Hg19::chr1:90962594..90962596,-#_ba7867af22b4fd1eeec292f126b55361p@chr1:90962594..90962596, -
9.37e-99FFCP PHASE2:Hg19::chr6:130878898..130878925,+#_ba7867af22b4fd1eeec292f126b55361p@chr6:130878898..130878925, +
9.37e-99FFCP PHASE2:Hg19::chr18:67696064..67696069,-#_ba7867af22b4fd1eeec292f126b55361p@chr18:67696064..67696069, -
9.37e-99FFCP PHASE1:Hg19::chr5:114289920..114289928,+#_ba7867af22b4fd1eeec292f126b55361p@chr5:114289920..114289928, +
9.37e-99FFCP PHASE1:Hg19::chr21:20752643..20752654,-#_ba7867af22b4fd1eeec292f126b55361p@chr21:20752643..20752654, -