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|located_in=
 
|located_in=
 
|name=nongranular leukocyte
 
|name=nongranular leukocyte
|namespace=cell;;efo
+
|namespace=FANTOM
 
|obo_creation_date=2010-07-22T11:30:33Z
 
|obo_creation_date=2010-07-22T11:30:33Z
 
|part_of=
 
|part_of=

Latest revision as of 07:40, 12 September 2014

Name:nongranular leukocyte
Namespace:FANTOM
Definition:"A leukocyte that lacks granules." [GOC:tfm]
Xrefs:
links:
FMA:62855
Synonyms: "agranular leukocyte" EXACT []
Created by:tmeehan
Creation date:2010-07-22T11:30:33Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000738(leukocyte)



Children


is a:CL:0000542 (lymphocyte),CL:0000576 (monocyte),CL:0000842 (mononuclear cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 10399-106A3 (acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh))
  • 10400-106A4 (acute myeloid leukemia (FAB M5) cell line:THP-1 (revived))
  • 10405-106A9 (acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed))
  • 10416-106C2 (chronic lymphocytic leukemia (T-CLL) cell line:SKW-3)
  • 10421-106C7 (adult T-cell leukemia cell line:ATN-1)
  • 10422-106C8 (Burkitt's lymphoma cell line:DAUDI)
  • 10427-106D4 (b cell line:RPMI1788)
  • 10429-106D6 (acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL)
  • 10455-106G5 (acute lymphoblastic leukemia (B-ALL) cell line:BALL-1)
  • 10464-106H5 (acute lymphoblastic leukemia (T-ALL) cell line:Jurkat)

... further results Mouse (Mus musculus)

  • 10399-106A3 (acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh))
  • 10400-106A4 (acute myeloid leukemia (FAB M5) cell line:THP-1 (revived))
  • 10405-106A9 (acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed))
  • 10416-106C2 (chronic lymphocytic leukemia (T-CLL) cell line:SKW-3)
  • 10421-106C7 (adult T-cell leukemia cell line:ATN-1)
  • 10422-106C8 (Burkitt's lymphoma cell line:DAUDI)
  • 10427-106D4 (b cell line:RPMI1788)
  • 10429-106D6 (acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL)
  • 10455-106G5 (acute lymphoblastic leukemia (B-ALL) cell line:BALL-1)
  • 10464-106H5 (acute lymphoblastic leukemia (T-ALL) cell line:Jurkat)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002087 (nongranular leukocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
6.22e-105FFCP PHASE1:Hg19::chr14:100531693..100531705,+#_8767f3fbe64920498674939ff3aa130ap6@EVL
6.22e-105FFCP PHASE2:Hg19::chr14:100531693..100531705,+#_8767f3fbe64920498674939ff3aa130ap6@EVL
3.55e-98FFCP PHASE2:Hg19::chr14:100531713..100531724,+#_d469e454cf73a0a9051aaf3365e6e675p11@EVL
3.55e-98FFCP PHASE1:Hg19::chr14:100531713..100531724,+#_d469e454cf73a0a9051aaf3365e6e675p11@EVL
5.93e-97FFCP PHASE2:Hg19::chr1:160681573..160681587,-#_37d3b7fe5b38fe1093dc6e2809a00f6bp2@CD48
5.93e-97FFCP PHASE1:Hg19::chr1:160681573..160681587,-#_37d3b7fe5b38fe1093dc6e2809a00f6bp2@CD48
7.03e-95FFCP PHASE2:Hg19::chr19:49842010..49842054,+#_0b68912d2c5488d685eb03171030e1f8p@chr19:49842010..49842054, +
7.03e-95FFCP PHASE1:Hg19::chr19:49842010..49842054,+#_0b68912d2c5488d685eb03171030e1f8p@chr19:49842010..49842054, +
1.93e-94FFCP PHASE1:Hg19::chr1:27952741..27952753,-#_2aa6187702dfaac4ef12daa767dea2d8p8@FGR
1.93e-94FFCP PHASE2:Hg19::chr1:27952741..27952753,-#_2aa6187702dfaac4ef12daa767dea2d8p8@FGR
2.5e-94FFCP PHASE2:Hg19::chr2:24149046..24149063,+#_0ef19b986db3506ca26ef04bc0911512p@chr2:24149046..24149063, +
2.5e-94FFCP PHASE1:Hg19::chr2:24149046..24149063,+#_0ef19b986db3506ca26ef04bc0911512p@chr2:24149046..24149063, +
2.6e-94FFCP PHASE1:Hg19::chr21:46340884..46340893,-#_531fe451f3b3835fe5955d783f279f78p3@ITGB2
2.6e-94FFCP PHASE2:Hg19::chr21:46340884..46340893,-#_531fe451f3b3835fe5955d783f279f78p3@ITGB2
1.47e-92FFCP PHASE2:Hg19::chr16:50776625..50776663,-#_5e7c5cec5871218ca55e9100e57413d6p@chr16:50776625..50776663, -
1.47e-92FFCP PHASE1:Hg19::chr16:50776625..50776663,-#_5e7c5cec5871218ca55e9100e57413d6p@chr16:50776625..50776663, -
2.81e-92FFCP PHASE2:Hg19::chr1:209941862..209941887,+#_740afecc0b4b00e0a8615958724a2174p6@TRAF3IP3
2.81e-92FFCP PHASE1:Hg19::chr1:209941862..209941887,+#_740afecc0b4b00e0a8615958724a2174p6@TRAF3IP3
1.71e-91FFCP PHASE1:Hg19::chr1:27952755..27952769,-#_3a3dc7068b4e33a7dcc6e061403998f8p9@FGR
1.71e-91FFCP PHASE2:Hg19::chr1:27952755..27952769,-#_3a3dc7068b4e33a7dcc6e061403998f8p9@FGR
2.63e-91FFCP PHASE2:Hg19::chr1:9711821..9711832,+#_1fe7d55fc30bd15580d64f4952bd83a8p2@PIK3CD
2.63e-91FFCP PHASE1:Hg19::chr1:9711821..9711832,+#_1fe7d55fc30bd15580d64f4952bd83a8p2@PIK3CD
2.95e-91FFCP PHASE1:Hg19::chr19:49842573..49842602,+#_6c1f0b7706a554a019a2fa2046f09757p@chr19:49842573..49842602, +
2.95e-91FFCP PHASE2:Hg19::chr19:49842573..49842602,+#_6c1f0b7706a554a019a2fa2046f09757p@chr19:49842573..49842602, +
3.26e-91FFCP PHASE2:Hg19::chr1:241695424..241695440,+#_cedcb7912d5771c7363013441e7502dbp2@KMO
3.26e-91FFCP PHASE1:Hg19::chr1:241695424..241695440,+#_cedcb7912d5771c7363013441e7502dbp2@KMO
1.05e-90FFCP PHASE1:Hg19::chr19:18197799..18197815,-#_45409e73125d8953563212da7aed0a3dp2@IL12RB1
1.05e-90FFCP PHASE2:Hg19::chr19:18197799..18197815,-#_45409e73125d8953563212da7aed0a3dp2@IL12RB1
1.13e-90FFCP PHASE2:Hg19::chr2:158300487..158300500,-#_6c32b552cd4d1f7347308b6be5df6ab0p3@CYTIP
1.13e-90FFCP PHASE1:Hg19::chr2:158300487..158300500,-#_6c32b552cd4d1f7347308b6be5df6ab0p3@CYTIP
5.51e-89FFCP PHASE1:Hg19::chr5:149790235..149790248,-#_36435fffb0f516c6f80b0b54533a412ap@chr5:149790235..149790248, -
5.51e-89FFCP PHASE2:Hg19::chr5:149790235..149790248,-#_36435fffb0f516c6f80b0b54533a412ap@chr5:149790235..149790248, -
1.29e-88FFCP PHASE1:Hg19::chr1:203256483..203256503,-#_eccf102b141c2c7fa2a36ab935a4b213p@chr1:203256483..203256503, -
1.29e-88FFCP PHASE2:Hg19::chr1:203256483..203256503,-#_eccf102b141c2c7fa2a36ab935a4b213p@chr1:203256483..203256503, -
1.62e-88FFCP PHASE1:Hg19::chr2:145276968..145276984,+#_3c3354ac6e6cdb7baca4c730f555478dp1@ZEB2-AS1
1.62e-88FFCP PHASE2:Hg19::chr2:145276968..145276984,+#_3c3354ac6e6cdb7baca4c730f555478dp1@ZEB2-AS1
3.1e-88FFCP PHASE1:Hg19::chr19:49843537..49843640,+#_17f003195f8f788deb50fc613a93cb78p@chr19:49843537..49843640, +
3.1e-88FFCP PHASE2:Hg19::chr19:49843537..49843640,+#_17f003195f8f788deb50fc613a93cb78p@chr19:49843537..49843640, +
4.19e-88FFCP PHASE2:Hg19::chr19:49838937..49838974,+#_8c51e8c538758be9425cda10ad821ad1p@chr19:49838937..49838974, +
4.19e-88FFCP PHASE1:Hg19::chr19:49838937..49838974,+#_8c51e8c538758be9425cda10ad821ad1p@chr19:49838937..49838974, +
1.33e-87FFCP PHASE1:Hg19::chr2:68592394..68592405,+#_dc7ab3dd5e25f672221a3f528d57af77p2@PLEK
1.33e-87FFCP PHASE2:Hg19::chr2:68592394..68592405,+#_dc7ab3dd5e25f672221a3f528d57af77p2@PLEK
2.52e-87FFCP PHASE1:Hg19::chr1:206730535..206730549,+#_9047e8100cbb65fcc954a20826d75b95p4@RASSF5
2.52e-87FFCP PHASE2:Hg19::chr1:206730535..206730549,+#_9047e8100cbb65fcc954a20826d75b95p4@RASSF5
2.56e-87FFCP PHASE1:Hg19::chr22:18260077..18260127,+#_e5cecfa7ffd0434fe81791f2b6a97eebp1@LINC00528
2.56e-87FFCP PHASE2:Hg19::chr22:18260077..18260127,+#_e5cecfa7ffd0434fe81791f2b6a97eebp1@LINC00528
3.44e-87FFCP PHASE2:Hg19::chr19:16695359..16695379,+#_80a70f41788d196a9d013bd35721671ep@chr19:16695359..16695379, +
3.44e-87FFCP PHASE1:Hg19::chr19:16695359..16695379,+#_80a70f41788d196a9d013bd35721671ep@chr19:16695359..16695379, +
4.03e-87FFCP PHASE1:Hg19::chr18:48405033..48405061,+#_84ee000c995a5596223949701591492dp3@ME2
4.03e-87FFCP PHASE2:Hg19::chr18:48405033..48405061,+#_84ee000c995a5596223949701591492dp3@ME2
7.88e-87FFCP PHASE1:Hg19::chr2:231090471..231090504,+#_19808a8e1bb630b31e0385e645872566p2@SP140
7.88e-87FFCP PHASE2:Hg19::chr2:231090471..231090504,+#_19808a8e1bb630b31e0385e645872566p2@SP140
1.02e-86FFCP PHASE2:Hg19::chr2:163175430..163175460,-#_c37a9015dc314081a138512cc7a54efbp2@IFIH1
1.02e-86FFCP PHASE1:Hg19::chr2:163175430..163175460,-#_c37a9015dc314081a138512cc7a54efbp2@IFIH1
1.64e-86FFCP PHASE1:Hg19::chr1:31206575..31206590,-#_eb676ec5eb9ee3efe57378f5f83c8171p@chr1:31206575..31206590, -
1.64e-86FFCP PHASE2:Hg19::chr1:31206575..31206590,-#_eb676ec5eb9ee3efe57378f5f83c8171p@chr1:31206575..31206590, -
2.42e-86FFCP PHASE1:Hg19::chr15:73075463..73075507,+#_a3cecceae11d08cc96ae41d149532868p1@LOC100287559
2.42e-86FFCP PHASE2:Hg19::chr15:73075463..73075507,+#_a3cecceae11d08cc96ae41d149532868p1@LOC100287559
2.44e-86FFCP PHASE1:Hg19::chr10:114134954..114135003,+#_59ff3ecd92ac2edb600d868c7e1c2673p5@ACSL5
2.44e-86FFCP PHASE2:Hg19::chr10:114134954..114135003,+#_59ff3ecd92ac2edb600d868c7e1c2673p5@ACSL5
3.68e-86FFCP PHASE1:Hg19::chr6:32577619..32577667,-#_5dbdd1b9e73c23d93e7debe42421920dp@chr6:32577619..32577667, -
3.68e-86FFCP PHASE2:Hg19::chr6:32577619..32577667,-#_5dbdd1b9e73c23d93e7debe42421920dp@chr6:32577619..32577667, -
6.68e-86FFCP PHASE2:Hg19::chr6:32411527..32411547,+#_90bbf33c85a5f403e8e247468cb1d8fbp4@HLA-DRA
6.68e-86FFCP PHASE1:Hg19::chr6:32411527..32411547,+#_90bbf33c85a5f403e8e247468cb1d8fbp4@HLA-DRA
1.09e-85FFCP PHASE2:Hg19::chr19:2085302..2085320,-#_fb7339f8dd00d08202c343d3a558167bp3@MOB3A
1.09e-85FFCP PHASE1:Hg19::chr19:2085302..2085320,-#_fb7339f8dd00d08202c343d3a558167bp3@MOB3A
1.76e-85FFCP PHASE1:Hg19::chr12:9801099..9801138,+#_0eee93a3deb2302f7569d3e995a763c8p5@LOC374443
1.76e-85FFCP PHASE2:Hg19::chr12:9801099..9801138,+#_0eee93a3deb2302f7569d3e995a763c8p5@LOC374443
4.61e-85FFCP PHASE1:Hg19::chr21:46340976..46341000,+#_962998ffe7d878ba2c225f75f9159bf8p1@ENST00000441379, p1@uc002zgh.2
4.61e-85FFCP PHASE2:Hg19::chr21:46340976..46341000,+#_962998ffe7d878ba2c225f75f9159bf8p1@ENST00000441379, p1@uc002zgh.2
5.83e-85FFCP PHASE2:Hg19::chr6:33036875..33036943,-#_ee995fbb3b022abaca00780e1c94ec03p@chr6:33036875..33036943, -
5.83e-85FFCP PHASE1:Hg19::chr6:33036875..33036943,-#_ee995fbb3b022abaca00780e1c94ec03p@chr6:33036875..33036943, -
4.54e-84FFCP PHASE1:Hg19::chr1:198668673..198668721,+#_604526cb1ee2bc6f8e0d9bb910a62180p@chr1:198668673..198668721, +
4.54e-84FFCP PHASE2:Hg19::chr1:198668673..198668721,+#_604526cb1ee2bc6f8e0d9bb910a62180p@chr1:198668673..198668721, +
4.69e-84FFCP PHASE2:Hg19::chr1:161039753..161039765,-#_5488b52b34952bccfd3e7f6658bb5ea2p5@ARHGAP30
4.69e-84FFCP PHASE1:Hg19::chr1:161039753..161039765,-#_5488b52b34952bccfd3e7f6658bb5ea2p5@ARHGAP30
5.1e-84FFCP PHASE2:Hg19::chr6:32412417..32412458,+#_cf5dcfadeba81bf343a1d5e93669f5c1p@chr6:32412417..32412458, +
5.1e-84FFCP PHASE1:Hg19::chr6:32412417..32412458,+#_cf5dcfadeba81bf343a1d5e93669f5c1p@chr6:32412417..32412458, +
7.27e-84FFCP PHASE2:Hg19::chr2:158300517..158300544,-#_716e7f43672dc46241ee9fcd12f0da12p2@CYTIP
7.27e-84FFCP PHASE1:Hg19::chr2:158300517..158300544,-#_716e7f43672dc46241ee9fcd12f0da12p2@CYTIP
8.77e-84FFCP PHASE2:Hg19::chr6:36973449..36973454,+#_82718793f87602b363acf45904bf87d7p4@FGD2
8.77e-84FFCP PHASE1:Hg19::chr6:36973449..36973454,+#_82718793f87602b363acf45904bf87d7p4@FGD2
1.85e-83FFCP PHASE1:Hg19::chrX:48547205..48547222,+#_10de9a61ce4296c069e7ed1aac938974p2@WAS
1.85e-83FFCP PHASE2:Hg19::chrX:48547205..48547222,+#_10de9a61ce4296c069e7ed1aac938974p2@WAS
1.97e-83FFCP PHASE2:Hg19::chr6:33037019..33037047,-#_c1ce918c91f0db87ba15df0b2b2fd4b1p5@HLA-DPA1
1.97e-83FFCP PHASE1:Hg19::chr6:33037019..33037047,-#_c1ce918c91f0db87ba15df0b2b2fd4b1p5@HLA-DPA1
3.03e-83FFCP PHASE1:Hg19::chr9:74920462..74920487,+#_64f50d47b5ccff1b9eed38fc6124ad5ap1@ENST00000451152
3.03e-83FFCP PHASE2:Hg19::chr9:74920462..74920487,+#_64f50d47b5ccff1b9eed38fc6124ad5ap1@ENST00000451152
3.58e-83FFCP PHASE2:Hg19::chr15:45018966..45018983,-#_774c0d93fb913f282d97a69633c98e35p@chr15:45018966..45018983, -
3.58e-83FFCP PHASE1:Hg19::chr15:45018966..45018983,-#_774c0d93fb913f282d97a69633c98e35p@chr15:45018966..45018983, -
3.99e-83FFCP PHASE1:Hg19::chr6:159465957..159465968,-#_cb104ed00c0eb4706a45163db2e4ac52p3@TAGAP
3.99e-83FFCP PHASE2:Hg19::chr6:159465957..159465968,-#_cb104ed00c0eb4706a45163db2e4ac52p3@TAGAP
4.17e-83FFCP PHASE1:Hg19::chr19:1067256..1067270,+#_952e7297722160858674cb38eab4315cp4@HMHA1
4.17e-83FFCP PHASE2:Hg19::chr19:1067256..1067270,+#_952e7297722160858674cb38eab4315cp4@HMHA1
4.94e-83FFCP PHASE2:Hg19::chr7:38389667..38389687,+#_8c4a362dcd0a5d01d469218218b9361fp1@M27346
4.94e-83FFCP PHASE1:Hg19::chr7:38389667..38389687,+#_8c4a362dcd0a5d01d469218218b9361fp1@M27346
7.34e-83FFCP PHASE2:Hg19::chr1:209941889..209941928,+#_25f712982ff72ac1fc2d64d111e51c4bp2@TRAF3IP3
7.34e-83FFCP PHASE1:Hg19::chr1:209941889..209941928,+#_25f712982ff72ac1fc2d64d111e51c4bp2@TRAF3IP3
9.65e-83FFCP PHASE1:Hg19::chr2:128458939..128458961,-#_381806c151b27d302934fb38b9767422p@chr2:128458939..128458961, -
9.65e-83FFCP PHASE2:Hg19::chr2:128458939..128458961,-#_381806c151b27d302934fb38b9767422p@chr2:128458939..128458961, -