Personal tools

CL:0002328: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{CL
{{CL
|id=CL:0002328
|alt_id=
|name=bronchial epithelial cell
|namespace=cell
|def="An epithelial cell of the bronchus." [GOC:tfm]
|xref=BTO:0002922
|is_a=CL:0000082;;CL:0002202
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-09-20T02:00:00Z
|def="An epithelial cell of the bronchus." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002328
|is_a=CL:0002202
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0002031;;UBERON:0002185
|name=bronchial epithelial cell
|namespace=cell
|obo_creation_date=2010-09-20T02:00:00Z
|part_of=UBERON:0002185;;UBERON:0002031;;UBERON:0002185
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=BTO:0002922
}}
}}

Revision as of 10:26, 12 September 2014

Name:bronchial epithelial cell
Namespace:cell
Definition:"An epithelial cell of the bronchus." [GOC:tfm]
Xrefs:
links:
BTO:0002922
Created by:tmeehan
Creation date:2010-09-20T02:00:00Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002202(epithelial cell of tracheobronchial tree)
part_of:UBERON:0002185(bronchus),UBERON:0002031(epithelium of bronchus),UBERON:0002185(bronchus)



Children


derives from:FF:0000015 (human bronchial epithelial cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002328 (bronchial epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.71e-84FFCP PHASE2:Hg19::chr3:189632708..189632721,-#_eb3c817e205f541ecddd1be51ebfda74p@chr3:189632708..189632721, -
1.71e-84FFCP PHASE1:Hg19::chr3:189632708..189632721,-#_eb3c817e205f541ecddd1be51ebfda74p@chr3:189632708..189632721, -
2.4e-66FFCP PHASE2:Hg19::chr1:209823455..209823467,-#_49a19343f84b352a084b12c15900a918p@chr1:209823455..209823467, -
2.4e-66FFCP PHASE1:Hg19::chr1:209823455..209823467,-#_49a19343f84b352a084b12c15900a918p@chr1:209823455..209823467, -
3.13e-50FFCP PHASE2:Hg19::chr1:95088552..95088567,+#_88240a5a932981430f570016764efdfep@chr1:95088552..95088567, +
3.13e-50FFCP PHASE1:Hg19::chr1:95088552..95088567,+#_88240a5a932981430f570016764efdfep@chr1:95088552..95088567, +
1.03e-46FFCP PHASE2:Hg19::chr1:3591362..3591369,-#_0f95d89ad6a198e96c810c69afa1a987p@chr1:3591362..3591369, -
1.03e-46FFCP PHASE1:Hg19::chr1:3591362..3591369,-#_0f95d89ad6a198e96c810c69afa1a987p@chr1:3591362..3591369, -
5.0e-45FFCP PHASE2:Hg19::chr2:113830230..113830233,-#_8acd328588949d337dff5615360b173fp@chr2:113830230..113830233, -
5.0e-45FFCP PHASE1:Hg19::chr2:113830230..113830233,-#_8acd328588949d337dff5615360b173fp@chr2:113830230..113830233, -
1.92e-43FFCP PHASE2:Hg19::chr10:73679250..73679255,-#_4e18694a4732959a689704d624cf0100p@chr10:73679250..73679255, -
1.92e-43FFCP PHASE1:Hg19::chr10:73679250..73679255,-#_4e18694a4732959a689704d624cf0100p@chr10:73679250..73679255, -
7.6e-41FFCP PHASE1:Hg19::chr1:9953308..9953320,-#_80f5456b19fb5682beb9e61a917d1b0dp9@CTNNBIP1
7.6e-41FFCP PHASE2:Hg19::chr1:9953308..9953320,-#_80f5456b19fb5682beb9e61a917d1b0dp9@CTNNBIP1
1.49e-38FFCP PHASE1:Hg19::chr17:48611912..48611919,+#_60cd078b9e9cb346d83c4ff3b5cd1c67p7@EPN3
1.49e-38FFCP PHASE2:Hg19::chr17:48611912..48611919,+#_60cd078b9e9cb346d83c4ff3b5cd1c67p7@EPN3
1.62e-38FFCP PHASE2:Hg19::chr1:95089255..95089279,-#_9d76269490fc9f381f4bbabce84a8376p1@ENST00000435559
1.62e-38FFCP PHASE1:Hg19::chr1:95089255..95089279,-#_9d76269490fc9f381f4bbabce84a8376p1@ENST00000435559
1.8e-38FFCP PHASE2:Hg19::chr7:135018332..135018336,+#_fe6c1d4f03bd513cf570c1875fe66baap@chr7:135018332..135018336, +
1.8e-38FFCP PHASE1:Hg19::chr7:135018332..135018336,+#_fe6c1d4f03bd513cf570c1875fe66baap@chr7:135018332..135018336, +
3.06e-38FFCP PHASE1:Hg19::chr17:48611940..48611947,+#_1876820d889b2c1d226b59a1f79d408ap5@EPN3
3.06e-38FFCP PHASE2:Hg19::chr17:48611940..48611947,+#_1876820d889b2c1d226b59a1f79d408ap5@EPN3
5.76e-38FFCP PHASE1:Hg19::chr2:74211227..74211238,+#_cf74e669e7b417c7eb8149cbef2d063cp@chr2:74211227..74211238, +
5.76e-38FFCP PHASE2:Hg19::chr2:74211227..74211238,+#_cf74e669e7b417c7eb8149cbef2d063cp@chr2:74211227..74211238, +
2.35e-36FFCP PHASE2:Hg19::chr17:38179639..38179652,-#_8111d87537b249ef3545b6b284464eeep7@MED24
2.35e-36FFCP PHASE1:Hg19::chr17:38179639..38179652,-#_8111d87537b249ef3545b6b284464eeep7@MED24
2.53e-35FFCP PHASE1:Hg19::chr20:14248741..14248745,-#_0fef736430573186ab04f61e1b59bb11p@chr20:14248741..14248745, -
2.53e-35FFCP PHASE2:Hg19::chr20:14248741..14248745,-#_0fef736430573186ab04f61e1b59bb11p@chr20:14248741..14248745, -
1.96e-34FFCP PHASE2:Hg19::chr17:38652393..38652403,-#_af2650c81f80590e9d64a263f9d10f16p16@TNS4
1.96e-34FFCP PHASE1:Hg19::chr17:38652393..38652403,-#_af2650c81f80590e9d64a263f9d10f16p16@TNS4
2.75e-34FFCP PHASE1:Hg19::chr1:153540420..153540455,+#_2e0f6124136adb3b0d5d3e794570fb36p@chr1:153540420..153540455, +
2.75e-34FFCP PHASE2:Hg19::chr1:153540420..153540455,+#_2e0f6124136adb3b0d5d3e794570fb36p@chr1:153540420..153540455, +
3.07e-34FFCP PHASE2:Hg19::chr12:52844247..52844256,-#_283f876d1fd80790651cb9636be724fbp@chr12:52844247..52844256, -
3.07e-34FFCP PHASE1:Hg19::chr12:52844247..52844256,-#_283f876d1fd80790651cb9636be724fbp@chr12:52844247..52844256, -
5.51e-34FFCP PHASE1:Hg19::chr11:94427497..94427507,-#_8a0f5d6bbf21e42aab755b7d70007b5fp@chr11:94427497..94427507, -
5.51e-34FFCP PHASE2:Hg19::chr11:94427497..94427507,-#_8a0f5d6bbf21e42aab755b7d70007b5fp@chr11:94427497..94427507, -
5.96e-34FFCP PHASE2:Hg19::chr1:27181551..27181558,-#_2f0b6e72a3c47ecb448cf5c222e57d23p@chr1:27181551..27181558, -
5.96e-34FFCP PHASE1:Hg19::chr1:27181551..27181558,-#_2f0b6e72a3c47ecb448cf5c222e57d23p@chr1:27181551..27181558, -
6.76e-34FFCP PHASE1:Hg19::chr1:183133608..183133625,-#_0435743b566e6b48134dfb9cda466446p@chr1:183133608..183133625, -
6.76e-34FFCP PHASE2:Hg19::chr1:183133608..183133625,-#_0435743b566e6b48134dfb9cda466446p@chr1:183133608..183133625, -
1.27e-33FFCP PHASE1:Hg19::chr3:190252374..190252383,-#_6700c5ef9ac5351e330f3c69d2bdc1afp@chr3:190252374..190252383, -
1.27e-33FFCP PHASE2:Hg19::chr3:190252374..190252383,-#_6700c5ef9ac5351e330f3c69d2bdc1afp@chr3:190252374..190252383, -
1.5e-33FFCP PHASE1:Hg19::chr8:29414184..29414190,+#_1012365246fe964a19ee383e47fc1fa5p@chr8:29414184..29414190, +
1.5e-33FFCP PHASE2:Hg19::chr8:29414184..29414190,+#_1012365246fe964a19ee383e47fc1fa5p@chr8:29414184..29414190, +
6.66e-33FFCP PHASE2:Hg19::chr14:67879076..67879080,+#_38497152605170c6ed9e9ba7e29e3df1p@chr14:67879076..67879080, +
6.66e-33FFCP PHASE1:Hg19::chr14:67879076..67879080,+#_38497152605170c6ed9e9ba7e29e3df1p@chr14:67879076..67879080, +
1.14e-32FFCP PHASE1:Hg19::chr1:209807970..209807983,-#_d3f2bf577870b54d66b8ccc9dec85679p@chr1:209807970..209807983, -
1.14e-32FFCP PHASE2:Hg19::chr1:209807970..209807983,-#_d3f2bf577870b54d66b8ccc9dec85679p@chr1:209807970..209807983, -
2.68e-32FFCP PHASE1:Hg19::chr6:83075367..83075383,-#_beb3027275771f9b781a985471764b6cp@chr6:83075367..83075383, -
2.68e-32FFCP PHASE2:Hg19::chr6:83075367..83075383,-#_beb3027275771f9b781a985471764b6cp@chr6:83075367..83075383, -
2.95e-31FFCP PHASE1:Hg19::chr4:15937715..15937733,-#_770332d35bf427b1a09be54d89e3633fp@chr4:15937715..15937733, -
2.95e-31FFCP PHASE2:Hg19::chr4:15937715..15937733,-#_770332d35bf427b1a09be54d89e3633fp@chr4:15937715..15937733, -
6.66e-31FFCP PHASE1:Hg19::chr9:26747081..26747110,+#_a67d8cdb9671a45fa1b24f763de88a26p@chr9:26747081..26747110, +
6.66e-31FFCP PHASE2:Hg19::chr9:26747081..26747110,+#_a67d8cdb9671a45fa1b24f763de88a26p@chr9:26747081..26747110, +
1.0e-30FFCP PHASE2:Hg19::chr11:120008883..120008884,-#_310cab57e0890fa6ea5d1a51c9f7f956p16@TRIM29
1.0e-30FFCP PHASE1:Hg19::chr11:120008883..120008884,-#_310cab57e0890fa6ea5d1a51c9f7f956p16@TRIM29
1.09e-30FFCP PHASE2:Hg19::chr13:61507880..61507904,-#_960b0008675d59007862f3d4048a43e4p@chr13:61507880..61507904, -
1.09e-30FFCP PHASE1:Hg19::chr13:61507880..61507904,-#_960b0008675d59007862f3d4048a43e4p@chr13:61507880..61507904, -
1.47e-30FFCP PHASE2:Hg19::chr1:152475755..152475761,+#_1ac2dd722d54334dba2b76209eafb9c6p@chr1:152475755..152475761, +
1.47e-30FFCP PHASE1:Hg19::chr1:152475755..152475761,+#_1ac2dd722d54334dba2b76209eafb9c6p@chr1:152475755..152475761, +
1.66e-30FFCP PHASE1:Hg19::chr17:39777017..39777027,+#_c41e21ae0cb35c7650a23948467cd7a5p@chr17:39777017..39777027, +
1.66e-30FFCP PHASE2:Hg19::chr17:39777017..39777027,+#_c41e21ae0cb35c7650a23948467cd7a5p@chr17:39777017..39777027, +
1.71e-30FFCP PHASE1:Hg19::chr4:82554167..82554171,+#_a3d5da3c50a02d50a612dc119b74cd79p@chr4:82554167..82554171, +
1.71e-30FFCP PHASE2:Hg19::chr4:82554167..82554171,+#_a3d5da3c50a02d50a612dc119b74cd79p@chr4:82554167..82554171, +
2.24e-30FFCP PHASE1:Hg19::chr1:209825932..209825936,-#_65a48061e3570d76a7ba6febb70af5b7p10@LAMB3
2.24e-30FFCP PHASE2:Hg19::chr1:209825932..209825936,-#_65a48061e3570d76a7ba6febb70af5b7p10@LAMB3
3.1e-30FFCP PHASE1:Hg19::chr15:76443020..76443024,-#_2e9fd6c12bc04a75ddcf1a4fd8d69c1fp@chr15:76443020..76443024, -
3.1e-30FFCP PHASE2:Hg19::chr15:76443020..76443024,-#_2e9fd6c12bc04a75ddcf1a4fd8d69c1fp@chr15:76443020..76443024, -
3.11e-30FFCP PHASE2:Hg19::chr17:39780624..39780631,-#_173f8063e13f5b5099c50fd6a406340ep8@KRT17
3.11e-30FFCP PHASE1:Hg19::chr17:39780624..39780631,-#_173f8063e13f5b5099c50fd6a406340ep8@KRT17
5.61e-30FFCP PHASE1:Hg19::chr1:156720278..156720286,+#_a089033a7528600b67dbd207b05c3dcap15@PRCC
5.61e-30FFCP PHASE2:Hg19::chr1:156720278..156720286,+#_a089033a7528600b67dbd207b05c3dcap15@PRCC
8.74e-30FFCP PHASE1:Hg19::chr14:94426721..94426726,+#_d31235bc9f84b3bf16521c7b34b0060cp@chr14:94426721..94426726, +
8.74e-30FFCP PHASE2:Hg19::chr14:94426721..94426726,+#_d31235bc9f84b3bf16521c7b34b0060cp@chr14:94426721..94426726, +
1.34e-29FFCP PHASE2:Hg19::chr12:52913881..52913889,+#_1605bec29578398b26b64950b3cc8f91p@chr12:52913881..52913889, +
1.34e-29FFCP PHASE1:Hg19::chr12:52913881..52913889,+#_1605bec29578398b26b64950b3cc8f91p@chr12:52913881..52913889, +
1.63e-29FFCP PHASE2:Hg19::chr17:73719483..73719489,-#_cdedde224bb125d281a60f6613988cb0p@chr17:73719483..73719489, -
1.63e-29FFCP PHASE1:Hg19::chr17:73719483..73719489,-#_cdedde224bb125d281a60f6613988cb0p@chr17:73719483..73719489, -
1.98e-29FFCP PHASE1:Hg19::chr1:209827520..209827532,-#_56e90caad0dffcf083ed180949c9af13p@chr1:209827520..209827532, -
1.98e-29FFCP PHASE2:Hg19::chr1:209827520..209827532,-#_56e90caad0dffcf083ed180949c9af13p@chr1:209827520..209827532, -
2.64e-29FFCP PHASE2:Hg19::chr12:56332022..56332030,+#_b1a9269b4aa13371632972975bda477bp17@DGKA
2.64e-29FFCP PHASE1:Hg19::chr12:56332022..56332030,+#_b1a9269b4aa13371632972975bda477bp17@DGKA
3.27e-28FFCP PHASE1:Hg19::chr17:38657781..38657786,-#_cbfc511961928672f822060464206986p15@TNS4
3.27e-28FFCP PHASE2:Hg19::chr17:38657781..38657786,-#_cbfc511961928672f822060464206986p15@TNS4
4.32e-28FFCP PHASE1:Hg19::chr1:55436540..55436544,-#_86887e2086e77b3d7fa53d8c28a6e989p@chr1:55436540..55436544, -
4.32e-28FFCP PHASE2:Hg19::chr1:55436540..55436544,-#_86887e2086e77b3d7fa53d8c28a6e989p@chr1:55436540..55436544, -
6.24e-28FFCP PHASE1:Hg19::chr1:153534013..153534025,+#_383b70c9736d9cf82abc1d881b90e6ddp@chr1:153534013..153534025, +
6.24e-28FFCP PHASE2:Hg19::chr1:153534013..153534025,+#_383b70c9736d9cf82abc1d881b90e6ddp@chr1:153534013..153534025, +
8.22e-28FFCP PHASE1:Hg19::chr17:39768786..39768828,-#_d67a7873312be58f5f48631a14d29444p2@KRT16
8.22e-28FFCP PHASE2:Hg19::chr17:39768786..39768828,-#_d67a7873312be58f5f48631a14d29444p2@KRT16
1.22e-27FFCP PHASE2:Hg19::chr1:44446555..44446566,+#_3e04243906b51b2b31acef595e71d1aap16@B4GALT2
1.22e-27FFCP PHASE2:Hg19::chr19:48101913..48101916,-#_3e04243906b51b2b31acef595e71d1aap@chr19:48101913..48101916, -
1.22e-27FFCP PHASE1:Hg19::chr2:70581573..70581577,-#_3e04243906b51b2b31acef595e71d1aap@chr2:70581573..70581577, -
1.22e-27FFCP PHASE2:Hg19::chr2:70581573..70581577,-#_3e04243906b51b2b31acef595e71d1aap@chr2:70581573..70581577, -
1.22e-27FFCP PHASE1:Hg19::chr1:153587360..153587377,-#_3e04243906b51b2b31acef595e71d1aap@chr1:153587360..153587377, -
1.22e-27FFCP PHASE1:Hg19::chr1:44446555..44446566,+#_3e04243906b51b2b31acef595e71d1aap16@B4GALT2
1.22e-27FFCP PHASE1:Hg19::chr19:48101913..48101916,-#_3e04243906b51b2b31acef595e71d1aap@chr19:48101913..48101916, -
1.22e-27FFCP PHASE2:Hg19::chr1:153587360..153587377,-#_3e04243906b51b2b31acef595e71d1aap@chr1:153587360..153587377, -
1.39e-27FFCP PHASE2:Hg19::chr2:20402306..20402318,-#_88c8d6ed3538922644522755878b36e8p@chr2:20402306..20402318, -
1.39e-27FFCP PHASE2:Hg19::chr1:46647115..46647118,-#_88c8d6ed3538922644522755878b36e8p@chr1:46647115..46647118, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002328&oldid=3272116"