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|id=CL:0002393
|id=CL:0002393
|name=intermediate monocyte
|name=intermediate monocyte
|namespace=efo
|namespace=cell;;efo
|def="A monocyte that has characteristics of both patrolling and inflammatory monocytes." [GOC:tfm, PMID:20628149, PMID:20870168]
|def="A monocyte that has characteristics of both patrolling and inflammatory monocytes." [GOC:tfm, PMID:20628149, PMID:20870168]
|xref=
|xref=
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|obo_creation_date=2010-10-04T10:52:03Z
|obo_creation_date=2010-10-04T10:52:03Z
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
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|located_in=
|located_in=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Latest revision as of 17:27, 26 June 2012

Name:intermediate monocyte
Namespace:cell;;efo
Definition:"A monocyte that has characteristics of both patrolling and inflammatory monocytes." [GOC:tfm, PMID:20628149, PMID:20870168]
Created by:tmeehan
Creation date:2010-10-04T10:52:03Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000576(monocyte)



Children


NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002393 (intermediate monocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
9.97e-155FFCP PHASE1:Hg19::chr1:42230480..42230491,+#_e4f953771c42a6d18a57241c10a0cd9dp@chr1:42230480..42230491, +
9.97e-155FFCP PHASE2:Hg19::chr1:42230480..42230491,+#_e4f953771c42a6d18a57241c10a0cd9dp@chr1:42230480..42230491, +
1.49e-154FFCP PHASE1:Hg19::chr10:115080077..115080087,-#_d837100eb9c3630795399393a8d05e82p@chr10:115080077..115080087, -
1.49e-154FFCP PHASE2:Hg19::chr10:115080077..115080087,-#_d837100eb9c3630795399393a8d05e82p@chr10:115080077..115080087, -
3.26e-139FFCP PHASE1:Hg19::chr7:2797828..2797848,-#_ba2ab176fdcc38007fb9bd6042d74ca5p@chr7:2797828..2797848, -
3.26e-139FFCP PHASE2:Hg19::chr7:2797828..2797848,-#_ba2ab176fdcc38007fb9bd6042d74ca5p@chr7:2797828..2797848, -
1.42e-130FFCP PHASE1:Hg19::chr10:115070193..115070207,-#_33de9be0258decb8b584aa658c84ed6dp@chr10:115070193..115070207, -
1.42e-130FFCP PHASE2:Hg19::chr10:115070193..115070207,-#_33de9be0258decb8b584aa658c84ed6dp@chr10:115070193..115070207, -
1.42e-130FFCP PHASE2:Hg19::chr1:161519682..161519691,-#_33de9be0258decb8b584aa658c84ed6dp7@FCGR3A
1.42e-130FFCP PHASE1:Hg19::chr1:161519682..161519691,-#_33de9be0258decb8b584aa658c84ed6dp7@FCGR3A
3.02e-112FFCP PHASE1:Hg19::chr15:75080883..75080890,+#_a12ae3f3d73a54aa9815e191395cf709p14@CSK
3.02e-112FFCP PHASE2:Hg19::chr15:75080883..75080890,+#_a12ae3f3d73a54aa9815e191395cf709p14@CSK
3.02e-112FFCP PHASE2:Hg19::chr17:47287786..47287800,-#_a12ae3f3d73a54aa9815e191395cf709p@chr17:47287786..47287800, -
3.02e-112FFCP PHASE1:Hg19::chr17:47287786..47287800,-#_a12ae3f3d73a54aa9815e191395cf709p@chr17:47287786..47287800, -
4.43e-112FFCP PHASE2:Hg19::chr7:20581377..20581387,-#_97cb68ac4d6baefddac95813a6ee5ee9p@chr7:20581377..20581387, -
4.43e-112FFCP PHASE1:Hg19::chr7:20581377..20581387,-#_97cb68ac4d6baefddac95813a6ee5ee9p@chr7:20581377..20581387, -
4.43e-112FFCP PHASE1:Hg19::chr3:188118437..188118443,+#_97cb68ac4d6baefddac95813a6ee5ee9p@chr3:188118437..188118443, +
4.43e-112FFCP PHASE1:Hg19::chr4:2794535..2794549,-#_97cb68ac4d6baefddac95813a6ee5ee9p@chr4:2794535..2794549, -
4.43e-112FFCP PHASE2:Hg19::chr4:2794535..2794549,-#_97cb68ac4d6baefddac95813a6ee5ee9p@chr4:2794535..2794549, -
4.43e-112FFCP PHASE2:Hg19::chr3:188118437..188118443,+#_97cb68ac4d6baefddac95813a6ee5ee9p@chr3:188118437..188118443, +
4.6e-109FFCP PHASE2:Hg19::chr15:22538560..22538601,-#_1c2d549c61f89ba93f5ac9a8f9137685p@chr15:22538560..22538601, -
4.6e-109FFCP PHASE1:Hg19::chr15:22538560..22538601,-#_1c2d549c61f89ba93f5ac9a8f9137685p@chr15:22538560..22538601, -
4.6e-109FFCP PHASE1:Hg19::chr10:43609342..43609351,+#_1c2d549c61f89ba93f5ac9a8f9137685p@chr10:43609342..43609351, +
4.6e-109FFCP PHASE2:Hg19::chr11:109964597..109964601,-#_1c2d549c61f89ba93f5ac9a8f9137685p@chr11:109964597..109964601, -
4.6e-109FFCP PHASE1:Hg19::chr11:109964597..109964601,-#_1c2d549c61f89ba93f5ac9a8f9137685p@chr11:109964597..109964601, -
4.6e-109FFCP PHASE2:Hg19::chr10:43609342..43609351,+#_1c2d549c61f89ba93f5ac9a8f9137685p@chr10:43609342..43609351, +
2.5e-107FFCP PHASE2:Hg19::chr8:11716298..11716315,-#_f76d083a9e35c82766cf0d82f48f4914p@chr8:11716298..11716315, -
2.5e-107FFCP PHASE1:Hg19::chr8:11716298..11716315,-#_f76d083a9e35c82766cf0d82f48f4914p@chr8:11716298..11716315, -
2.26e-103FFCP PHASE1:Hg19::chr2:16845595..16845603,-#_b35ad6c941404e600e9ab285ad007dcep@chr2:16845595..16845603, -
2.26e-103FFCP PHASE2:Hg19::chr2:16845595..16845603,-#_b35ad6c941404e600e9ab285ad007dcep@chr2:16845595..16845603, -
7.39e-99FFCP PHASE1:Hg19::chr11:60722191..60722202,+#_e0370e4da9983cfb17489cf0d1b3d6d3p@chr11:60722191..60722202, +
7.39e-99FFCP PHASE2:Hg19::chr11:60722191..60722202,+#_e0370e4da9983cfb17489cf0d1b3d6d3p@chr11:60722191..60722202, +
7.69e-99FFCP PHASE2:Hg19::chr9:136709727..136709738,+#_2a2a2b3712f43ee38bbf8a2f9a793a1ep@chr9:136709727..136709738, +
7.69e-99FFCP PHASE1:Hg19::chr9:136709727..136709738,+#_2a2a2b3712f43ee38bbf8a2f9a793a1ep@chr9:136709727..136709738, +
2.01e-98FFCP PHASE2:Hg19::chr9:137267629..137267639,-#_be52fed8bb0de7830d021ff0c397055dp@chr9:137267629..137267639, -
2.01e-98FFCP PHASE1:Hg19::chr9:137267629..137267639,-#_be52fed8bb0de7830d021ff0c397055dp@chr9:137267629..137267639, -
2.82e-98FFCP PHASE2:Hg19::chr6:31584663..31584673,-#_66de12a24140a3c6f97fb82e04f727a1p@chr6:31584663..31584673, -
2.82e-98FFCP PHASE1:Hg19::chr6:31584663..31584673,-#_66de12a24140a3c6f97fb82e04f727a1p@chr6:31584663..31584673, -
5.98e-94FFCP PHASE1:Hg19::chr17:81148156..81148167,-#_f2c668b5c0ec0596de31589aed8b993ap@chr17:81148156..81148167, -
5.98e-94FFCP PHASE2:Hg19::chr17:81148156..81148167,-#_f2c668b5c0ec0596de31589aed8b993ap@chr17:81148156..81148167, -
5.85e-93FFCP PHASE1:Hg19::chr2:208368220..208368233,+#_5c946a7efaf8c040e64dc82da136c68dp@chr2:208368220..208368233, +
5.85e-93FFCP PHASE2:Hg19::chr2:208368220..208368233,+#_5c946a7efaf8c040e64dc82da136c68dp@chr2:208368220..208368233, +
4.91e-91FFCP PHASE2:Hg19::chr17:40351201..40351230,+#_b12006a4abb9c27bba19d0704b776e8fp@chr17:40351201..40351230, +
4.91e-91FFCP PHASE1:Hg19::chr17:40351201..40351230,+#_b12006a4abb9c27bba19d0704b776e8fp@chr17:40351201..40351230, +
5.21e-88FFCP PHASE1:Hg19::chr3:101592712..101592731,+#_31f9715242347d29ff9e500370076d02p@chr3:101592712..101592731, +
5.21e-88FFCP PHASE2:Hg19::chr3:101592712..101592731,+#_31f9715242347d29ff9e500370076d02p@chr3:101592712..101592731, +
8.49e-88FFCP PHASE1:Hg19::chr19:50285177..50285181,+#_fe6244e696ffa4136c689e38d9a3145dp@chr19:50285177..50285181, +
8.49e-88FFCP PHASE2:Hg19::chr19:50285177..50285181,+#_fe6244e696ffa4136c689e38d9a3145dp@chr19:50285177..50285181, +
9.86e-88FFCP PHASE1:Hg19::chr7:2673688..2673709,-#_f0abad93d4928d4f7297670a61299c29p@chr7:2673688..2673709, -
9.86e-88FFCP PHASE2:Hg19::chr7:2673688..2673709,-#_f0abad93d4928d4f7297670a61299c29p@chr7:2673688..2673709, -
1.37e-87FFCP PHASE2:Hg19::chr8:144480343..144480350,-#_4f6aac4d2f51b36b8ac01be93d5cdffep@chr8:144480343..144480350, -
1.37e-87FFCP PHASE1:Hg19::chr8:144480343..144480350,-#_4f6aac4d2f51b36b8ac01be93d5cdffep@chr8:144480343..144480350, -
2.08e-87FFCP PHASE2:Hg19::chr6:144952186..144952227,+#_7e629841cf69d6036162fa9c248b4efcp@chr6:144952186..144952227, +
2.08e-87FFCP PHASE1:Hg19::chr6:144952186..144952227,+#_7e629841cf69d6036162fa9c248b4efcp@chr6:144952186..144952227, +
5.09e-87FFCP PHASE2:Hg19::chr12:133065759..133065769,-#_3c2e0184d71c5d5d70de1c322629e1d9p@chr12:133065759..133065769, -
5.09e-87FFCP PHASE1:Hg19::chr12:133065759..133065769,-#_3c2e0184d71c5d5d70de1c322629e1d9p@chr12:133065759..133065769, -
1.01e-83FFCP PHASE2:Hg19::chr5:1503650..1503661,-#_066926649b552f8099981f1491ceb259p@chr5:1503650..1503661, -
1.01e-83FFCP PHASE1:Hg19::chr5:1503650..1503661,-#_066926649b552f8099981f1491ceb259p@chr5:1503650..1503661, -
3.51e-83FFCP PHASE1:Hg19::chr3:101592758..101592794,+#_21b3b528f6ed2b4c0f71cf9378d2e377p@chr3:101592758..101592794, +
3.51e-83FFCP PHASE2:Hg19::chr3:101592758..101592794,+#_21b3b528f6ed2b4c0f71cf9378d2e377p@chr3:101592758..101592794, +
8.72e-83FFCP PHASE2:Hg19::chr7:2673037..2673047,-#_be2ea30ecdaf07193c55f7d91dbd8ac0p@chr7:2673037..2673047, -
8.72e-83FFCP PHASE1:Hg19::chr7:2673037..2673047,-#_be2ea30ecdaf07193c55f7d91dbd8ac0p@chr7:2673037..2673047, -
2.39e-82FFCP PHASE2:Hg19::chr3:101618082..101618090,+#_cd6b643bd75f36017fb98cf593c9c5d0p@chr3:101618082..101618090, +
2.39e-82FFCP PHASE1:Hg19::chr3:101618082..101618090,+#_cd6b643bd75f36017fb98cf593c9c5d0p@chr3:101618082..101618090, +
2.79e-82FFCP PHASE2:Hg19::chr9:27701766..27701787,-#_d234d69f9462a5b4608f48c9955db305p@chr9:27701766..27701787, -
2.79e-82FFCP PHASE1:Hg19::chr9:27701766..27701787,-#_d234d69f9462a5b4608f48c9955db305p@chr9:27701766..27701787, -
3.43e-82FFCP PHASE1:Hg19::chr7:77429034..77429040,-#_778ac96fa70f83f12862d78cce706d50p@chr7:77429034..77429040, -
3.43e-82FFCP PHASE2:Hg19::chr7:77429034..77429040,-#_778ac96fa70f83f12862d78cce706d50p@chr7:77429034..77429040, -
3.45e-82FFCP PHASE2:Hg19::chr1:151917057..151917078,-#_b547246ee6e204c9b881341293491f16p@chr1:151917057..151917078, -
3.45e-82FFCP PHASE1:Hg19::chr1:151917057..151917078,-#_b547246ee6e204c9b881341293491f16p@chr1:151917057..151917078, -
6.03e-80FFCP PHASE2:Hg19::chr10:115082678..115082691,-#_1e920218389ea3b3af9b1a2a1b0f9958p@chr10:115082678..115082691, -
6.03e-80FFCP PHASE1:Hg19::chr10:115082678..115082691,-#_1e920218389ea3b3af9b1a2a1b0f9958p@chr10:115082678..115082691, -
3.09e-79FFCP PHASE1:Hg19::chr6:144980558..144980569,+#_d4b2cf9dcf76e48ff3bdd758f86445f6p30@UTRN
3.09e-79FFCP PHASE2:Hg19::chr3:50658125..50658131,+#_d4b2cf9dcf76e48ff3bdd758f86445f6p@chr3:50658125..50658131, +
3.09e-79FFCP PHASE1:Hg19::chr3:50658125..50658131,+#_d4b2cf9dcf76e48ff3bdd758f86445f6p@chr3:50658125..50658131, +
3.09e-79FFCP PHASE2:Hg19::chr6:144980558..144980569,+#_d4b2cf9dcf76e48ff3bdd758f86445f6p30@UTRN
3.53e-79FFCP PHASE2:Hg19::chr16:1538881..1538887,+#_a3a73acf0ed5de255f57e6071839410bp@chr16:1538881..1538887, +
3.53e-79FFCP PHASE1:Hg19::chr16:1538881..1538887,+#_a3a73acf0ed5de255f57e6071839410bp@chr16:1538881..1538887, +
6.06e-79FFCP PHASE1:Hg19::chr17:7034579..7034590,+#_1bb1e43589142688295028e2c2796d74p@chr17:7034579..7034590, +
6.06e-79FFCP PHASE2:Hg19::chr17:7034579..7034590,+#_1bb1e43589142688295028e2c2796d74p@chr17:7034579..7034590, +
1.36e-78FFCP PHASE2:Hg19::chr17:72776516..72776526,+#_0a3f31b892020d8542ba3247c5425329p@chr17:72776516..72776526, +
1.36e-78FFCP PHASE1:Hg19::chr17:72776516..72776526,+#_0a3f31b892020d8542ba3247c5425329p@chr17:72776516..72776526, +
2.03e-78FFCP PHASE1:Hg19::chr12:116971460..116971463,+#_d921a0fda156e00a5b0b8b0004358ae7p@chr12:116971460..116971463, +
2.03e-78FFCP PHASE2:Hg19::chr12:116971460..116971463,+#_d921a0fda156e00a5b0b8b0004358ae7p@chr12:116971460..116971463, +
3.18e-78FFCP PHASE2:Hg19::chr19:50283684..50283702,+#_029683746e24e25d06f1c7652ccfaf27p@chr19:50283684..50283702, +
3.18e-78FFCP PHASE1:Hg19::chr19:50283684..50283702,+#_029683746e24e25d06f1c7652ccfaf27p@chr19:50283684..50283702, +
3.75e-78FFCP PHASE1:Hg19::chr7:155055063..155055078,+#_1b467d25b9197df5b38cfe6ac51564bdp@chr7:155055063..155055078, +
3.75e-78FFCP PHASE2:Hg19::chr7:155055063..155055078,+#_1b467d25b9197df5b38cfe6ac51564bdp@chr7:155055063..155055078, +
4.4e-78FFCP PHASE2:Hg19::chr16:1538765..1538796,-#_7bc0b0781df3068f2114d523dfd3f76dp1@PTX4
4.4e-78FFCP PHASE1:Hg19::chr16:1538765..1538796,-#_7bc0b0781df3068f2114d523dfd3f76dp1@PTX4
1.01e-77FFCP PHASE2:Hg19::chr10:60026744..60026760,-#_a64d2a768f6d0ebff199541e1d8613a4p@chr10:60026744..60026760, -
1.01e-77FFCP PHASE1:Hg19::chr10:60026744..60026760,-#_a64d2a768f6d0ebff199541e1d8613a4p@chr10:60026744..60026760, -
1.37e-77FFCP PHASE2:Hg19::chr11:88071295..88071324,-#_7cf67a0d77b7342118ba8bf1bf54c84bp5@CTSC
1.37e-77FFCP PHASE1:Hg19::chr11:88071295..88071324,-#_7cf67a0d77b7342118ba8bf1bf54c84bp5@CTSC
2.67e-75FFCP PHASE1:Hg19::chr7:139529773..139529801,+#_2d921b5453712d649b1085fa08938fbbp1@AK130708
2.67e-75FFCP PHASE2:Hg19::chr7:139529773..139529801,+#_2d921b5453712d649b1085fa08938fbbp1@AK130708
7.66e-75FFCP PHASE1:Hg19::chr8:52811117..52811133,+#_c3f66d4c5bc49d062207ac12626ae8d7p@chr8:52811117..52811133, +
7.66e-75FFCP PHASE2:Hg19::chr8:52811117..52811133,+#_c3f66d4c5bc49d062207ac12626ae8d7p@chr8:52811117..52811133, +
1.39e-74FFCP PHASE2:Hg19::chr17:81039792..81039812,+#_9b293ef105c4b272e346b602477ecbf9p@chr17:81039792..81039812, +
1.39e-74FFCP PHASE1:Hg19::chr17:81039792..81039812,+#_9b293ef105c4b272e346b602477ecbf9p@chr17:81039792..81039812, +