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(Created page with "{{CL |id=CL:0002476 |name=bone marrow macrophage |namespace=cell |def="A tissue-resident macrophage located in the bone marrow. This cell type is B220-negative, CD3e-nega...")
 
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|def="A tissue-resident macrophage located in the bone marrow.  This cell type is B220-negative, CD3e-negative, Ly-6C-negative, CD115-positive, F4/80-positive." [GOC:tfm, http://www.immgen.org/index_content.html]
 
|def="A tissue-resident macrophage located in the bone marrow.  This cell type is B220-negative, CD3e-negative, Ly-6C-negative, CD115-positive, F4/80-positive." [GOC:tfm, http://www.immgen.org/index_content.html]
 
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|obo_creation_date=2010-11-23T04:19:25Z
 
|obo_creation_date=2010-11-23T04:19:25Z
 
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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
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Revision as of 08:27, 26 June 2012

Name:bone marrow macrophage
Namespace:cell;;efo
Definition:"A tissue-resident macrophage located in the bone marrow. This cell type is B220-negative, CD3e-negative, Ly-6C-negative, CD115-positive, F4/80-positive." [GOC:tfm, http://www.immgen.org/index_content.html]
Xrefs:
links:
BTO:0004732
Synonyms: "MF.BM" RELATED []
Created by:tmeehan
Creation date:2010-11-23T04:19:25Z


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data

Parents

is_a:CL:0000864(tissue-resident macrophage)



Children


is a:FF:3704-172A1 (macrophage, bone marrow derived),FF:3967-173D4 (macrophage, TB infection, non-stimulated BMDM, without Mtb)
derives from:FF:0200021 (macrophage, bone marrow-derived sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 2171-50H8 (macrophage, bone marrow derived)
  • 3560-170A1 (macrophage, bone marrow derived)
  • 3632-171A1 (macrophage, bone marrow derived)
  • 3704-172A1 (macrophage, bone marrow derived)
  • 3967-173D4 (macrophage, TB infection, non-stimulated BMDM, without Mtb)

Mouse (Mus musculus)

  • 2171-50H8 (macrophage, bone marrow derived)
  • 3560-170A1 (macrophage, bone marrow derived)
  • 3632-171A1 (macrophage, bone marrow derived)
  • 3704-172A1 (macrophage, bone marrow derived)
  • 3967-173D4 (macrophage, TB infection, non-stimulated BMDM, without Mtb)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002476 (bone marrow macrophage), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr6:48989609..48989612,+#_6a364f1402d8e18764648d55a21d5328p@chr6:48989609..48989612, +
1.87e-86FFCP PHASE2:Mm9::chr11:4733080..4733087,-#_6a364f1402d8e18764648d55a21d5328p13@Nf2
1.87e-86FFCP PHASE2:Mm9::chr7:135282667..135282669,+#_6a364f1402d8e18764648d55a21d5328p@chr7:135282667..135282669, +
1.87e-86FFCP PHASE2:Mm9::chr4:136685291..136685295,+#_6a364f1402d8e18764648d55a21d5328p@chr4:136685291..136685295, +
1.87e-86FFCP PHASE2:Mm9::chr13:13485859..13485864,-#_6a364f1402d8e18764648d55a21d5328p4@Gpr137b
1.87e-86FFCP PHASE1:Mm9::chr13:103497023..103497030,+#_6a364f1402d8e18764648d55a21d5328+, p@chr13:103497023..103497030
1.87e-86FFCP PHASE2:Mm9::chr7:31145621..31145622,+#_6a364f1402d8e18764648d55a21d5328p@chr7:31145621..31145622, +
1.87e-86FFCP PHASE1:Mm9::chr11:4733080..4733087,-#_6a364f1402d8e18764648d55a21d5328p13@Nf2
1.87e-86FFCP PHASE1:Mm9::chr6:48989609..48989612,+#_6a364f1402d8e18764648d55a21d5328p@chr6:48989609..48989612, +
1.87e-86FFCP PHASE2:Mm9::chr13:103497023..103497030,+#_6a364f1402d8e18764648d55a21d5328p@chr13:103497023..103497030, +
1.87e-86FFCP PHASE1:Mm9::chr7:31145621..31145622,+#_6a364f1402d8e18764648d55a21d5328p@chr7:31145621..31145622, +
1.87e-86FFCP PHASE1:Mm9::chr7:135282667..135282669,+#_6a364f1402d8e18764648d55a21d5328p@chr7:135282667..135282669, +
1.87e-86FFCP PHASE1:Mm9::chr13:13485859..13485864,-#_6a364f1402d8e18764648d55a21d5328p4@Gpr137b
1.87e-86FFCP PHASE2:Mm9::chrX:9046562..9046572,-#_6a364f1402d8e18764648d55a21d5328p4@Cybb
1.87e-86FFCP PHASE1:Mm9::chrX:9046562..9046572,-#_6a364f1402d8e18764648d55a21d5328p4@Cybb
1.87e-86FFCP PHASE1:Mm9::chr4:136685291..136685295,+#_6a364f1402d8e18764648d55a21d5328p@chr4:136685291..136685295, +
1.68e-58FFCP PHASE1:Mm9::chr3:95358394..95358404,+#_daac446b788b7146e1418827035867f6p@chr3:95358394..95358404, +
1.68e-58FFCP PHASE2:Mm9::chrX:9046606..9046630,-#_daac446b788b7146e1418827035867f6p3@Cybb
1.68e-58FFCP PHASE1:Mm9::chrX:9046606..9046630,-#_daac446b788b7146e1418827035867f6p3@Cybb
1.68e-58FFCP PHASE2:Mm9::chr19:12539392..12539396,+#_daac446b788b7146e1418827035867f6p@chr19:12539392..12539396, +
1.68e-58FFCP PHASE1:Mm9::chr7:128207732..128207737,-#_daac446b788b7146e1418827035867f6p@chr7:128207732..128207737, -
1.68e-58FFCP PHASE2:Mm9::chr1:173159807..173159816,-#_daac446b788b7146e1418827035867f6p@chr1:173159807..173159816, -
1.68e-58FFCP PHASE2:Mm9::chr17:25273605..25273609,+#_daac446b788b7146e1418827035867f6p6@Clcn7
1.68e-58FFCP PHASE2:Mm9::chr7:128207732..128207737,-#_daac446b788b7146e1418827035867f6p@chr7:128207732..128207737, -
1.68e-58FFCP PHASE2:Mm9::chr13:76099911..76099914,+#_daac446b788b7146e1418827035867f6p@chr13:76099911..76099914, +
1.68e-58FFCP PHASE2:Mm9::chr3:95358394..95358404,+#_daac446b788b7146e1418827035867f6p@chr3:95358394..95358404, +
1.68e-58FFCP PHASE1:Mm9::chr13:76099911..76099914,+#_daac446b788b7146e1418827035867f6p@chr13:76099911..76099914, +
1.68e-58FFCP PHASE1:Mm9::chr6:122528009..122528020,-#_daac446b788b7146e1418827035867f6-, p@chr6:122528009..122528020
1.68e-58FFCP PHASE1:Mm9::chr3:151394747..151394780,-#_daac446b788b7146e1418827035867f6p@chr3:151394747..151394780, -
1.68e-58FFCP PHASE1:Mm9::chr17:25273605..25273609,+#_daac446b788b7146e1418827035867f6p6@Clcn7
1.68e-58FFCP PHASE1:Mm9::chr1:173159807..173159816,-#_daac446b788b7146e1418827035867f6p@chr1:173159807..173159816, -
1.68e-58FFCP PHASE1:Mm9::chr19:12539392..12539396,+#_daac446b788b7146e1418827035867f6p@chr19:12539392..12539396, +
1.68e-58FFCP PHASE2:Mm9::chr6:122528009..122528020,-#_daac446b788b7146e1418827035867f6p@chr6:122528009..122528020, -
1.68e-58FFCP PHASE2:Mm9::chr3:151394747..151394780,-#_daac446b788b7146e1418827035867f6p@chr3:151394747..151394780, -
6.41e-58FFCP PHASE1:Mm9::chr16:32400811..32400820,+#_744bf2dc1a9516e26a4d505b6545a5b1p4@Tm4sf19
6.41e-58FFCP PHASE1:Mm9::chr10:127033266..127033304,+#_744bf2dc1a9516e26a4d505b6545a5b1p1@ENSMUST00000124182
6.41e-58FFCP PHASE2:Mm9::chr10:127033266..127033304,+#_744bf2dc1a9516e26a4d505b6545a5b1p1@ENSMUST00000124182
6.41e-58FFCP PHASE2:Mm9::chr16:32400811..32400820,+#_744bf2dc1a9516e26a4d505b6545a5b1p4@Tm4sf19
1.66e-44FFCP PHASE2:Mm9::chr7:29692313..29692318,-#_e827913f4c0381991c9a259302c24aabp11@Actn4
1.66e-44FFCP PHASE1:Mm9::chr13:20988377..20988387,+#_e827913f4c0381991c9a259302c24aabp@chr13:20988377..20988387, +
1.66e-44FFCP PHASE1:Mm9::chr16:44106307..44106309,-#_e827913f4c0381991c9a259302c24aabp@chr16:44106307..44106309, -
1.66e-44FFCP PHASE1:Mm9::chr6:122798286..122798297,-#_e827913f4c0381991c9a259302c24aabp@chr6:122798286..122798297, -
1.66e-44FFCP PHASE2:Mm9::chr12:104680569..104680588,-#_e827913f4c0381991c9a259302c24aabp@chr12:104680569..104680588, -
1.66e-44FFCP PHASE2:Mm9::chr3:95350717..95350726,+#_e827913f4c0381991c9a259302c24aabp@chr3:95350717..95350726, +
1.66e-44FFCP PHASE2:Mm9::chr13:20988377..20988387,+#_e827913f4c0381991c9a259302c24aabp@chr13:20988377..20988387, +
1.66e-44FFCP PHASE2:Mm9::chr3:122563187..122563188,+#_e827913f4c0381991c9a259302c24aabp@chr3:122563187..122563188, +
1.66e-44FFCP PHASE1:Mm9::chr3:95350717..95350726,+#_e827913f4c0381991c9a259302c24aabp@chr3:95350717..95350726, +
1.66e-44FFCP PHASE1:Mm9::chr3:122563187..122563188,+#_e827913f4c0381991c9a259302c24aabp@chr3:122563187..122563188, +
1.66e-44FFCP PHASE1:Mm9::chr7:29692313..29692318,-#_e827913f4c0381991c9a259302c24aabp11@Actn4
1.66e-44FFCP PHASE2:Mm9::chr6:122798286..122798297,-#_e827913f4c0381991c9a259302c24aab-, p@chr6:122798286..122798297
1.66e-44FFCP PHASE2:Mm9::chr16:44106307..44106309,-#_e827913f4c0381991c9a259302c24aabp@chr16:44106307..44106309, -
1.66e-44FFCP PHASE1:Mm9::chr12:104680569..104680588,-#_e827913f4c0381991c9a259302c24aabp@chr12:104680569..104680588, -
2.75e-44FFCP PHASE1:Mm9::chr11:88785582..88785590,-#_c8ba89226db401f97d4daea4a7c52ef6p@chr11:88785582..88785590, -
2.75e-44FFCP PHASE2:Mm9::chr11:88785582..88785590,-#_c8ba89226db401f97d4daea4a7c52ef6p@chr11:88785582..88785590, -
2.75e-44FFCP PHASE2:Mm9::chr14:103412110..103412119,+#_c8ba89226db401f97d4daea4a7c52ef6p@chr14:103412110..103412119, +
2.75e-44FFCP PHASE1:Mm9::chr14:103412110..103412119,+#_c8ba89226db401f97d4daea4a7c52ef6p@chr14:103412110..103412119, +
4.23e-36FFCP PHASE1:Mm9::chr3:96097919..96097924,-#_0d87922d81c514c1dd6fe1be989b67b6p2@Fcgr1
4.23e-36FFCP PHASE1:Mm9::chr7:128207758..128207768,-#_0d87922d81c514c1dd6fe1be989b67b6p@chr7:128207758..128207768, -
4.23e-36FFCP PHASE2:Mm9::chr7:128207758..128207768,-#_0d87922d81c514c1dd6fe1be989b67b6p@chr7:128207758..128207768, -
4.23e-36FFCP PHASE2:Mm9::chr3:96097919..96097924,-#_0d87922d81c514c1dd6fe1be989b67b6p2@Fcgr1
6.35e-36FFCP PHASE2:Mm9::chr11:8475592..8475595,-#_a525339e6e81ca74a8c171c4292a8c5dp@chr11:8475592..8475595, -
6.35e-36FFCP PHASE2:Mm9::chr9:37046383..37046386,-#_a525339e6e81ca74a8c171c4292a8c5dp@chr9:37046383..37046386, -
6.35e-36FFCP PHASE1:Mm9::chr11:8475592..8475595,-#_a525339e6e81ca74a8c171c4292a8c5dp@chr11:8475592..8475595, -
6.35e-36FFCP PHASE1:Mm9::chr9:37046383..37046386,-#_a525339e6e81ca74a8c171c4292a8c5dp@chr9:37046383..37046386, -
9.52e-36FFCP PHASE2:Mm9::chr4:144493873..144493880,-#_867d5608800f15ca602711160e7c7220p@chr4:144493873..144493880, -
9.52e-36FFCP PHASE1:Mm9::chr4:144493873..144493880,-#_867d5608800f15ca602711160e7c7220p@chr4:144493873..144493880, -
1.42e-35FFCP PHASE2:Mm9::chr11:64022543..64022554,-#_f32b3a5980f26e61e4c58209c267ad06p@chr11:64022543..64022554, -
1.42e-35FFCP PHASE1:Mm9::chr15:80502066..80502076,+#_f32b3a5980f26e61e4c58209c267ad06p3@Fam83f
1.42e-35FFCP PHASE1:Mm9::chr11:64022543..64022554,-#_f32b3a5980f26e61e4c58209c267ad06p@chr11:64022543..64022554, -
1.42e-35FFCP PHASE2:Mm9::chr15:80502066..80502076,+#_f32b3a5980f26e61e4c58209c267ad06p3@Fam83f
2.13e-35FFCP PHASE1:Mm9::chr19:12517323..12517331,+#_ccb9d172c2e24c75a1f2998697d1c412p@chr19:12517323..12517331, +
2.13e-35FFCP PHASE2:Mm9::chr1:77948007..77948014,+#_ccb9d172c2e24c75a1f2998697d1c412p@chr1:77948007..77948014, +
2.13e-35FFCP PHASE2:Mm9::chr19:12517323..12517331,+#_ccb9d172c2e24c75a1f2998697d1c412p@chr19:12517323..12517331, +
2.13e-35FFCP PHASE2:Mm9::chr11:97857366..97857389,-#_ccb9d172c2e24c75a1f2998697d1c412p3@Arl5c
2.13e-35FFCP PHASE1:Mm9::chrX:104344399..104344411,+#_ccb9d172c2e24c75a1f2998697d1c412p9@A630033H20Rik
2.13e-35FFCP PHASE1:Mm9::chr1:77948007..77948014,+#_ccb9d172c2e24c75a1f2998697d1c412p@chr1:77948007..77948014, +
2.13e-35FFCP PHASE2:Mm9::chrX:104344399..104344411,+#_ccb9d172c2e24c75a1f2998697d1c412p9@A630033H20Rik
2.13e-35FFCP PHASE1:Mm9::chr11:97857366..97857389,-#_ccb9d172c2e24c75a1f2998697d1c412p3@Arl5c
3.18e-35FFCP PHASE1:Mm9::chr17:30675047..30675052,-#_ff1e75445f0877ab04d8b06ab96fa80cp@chr17:30675047..30675052, -
3.18e-35FFCP PHASE2:Mm9::chr17:30675047..30675052,-#_ff1e75445f0877ab04d8b06ab96fa80cp@chr17:30675047..30675052, -
1.73e-30FFCP PHASE2:Mm9::chr1:173159866..173159877,-#_428513479930f4a8961c2ad335439fb7p@chr1:173159866..173159877, -
1.73e-30FFCP PHASE2:Mm9::chr6:116583427..116583433,-#_428513479930f4a8961c2ad335439fb7p@chr6:116583427..116583433, -
1.73e-30FFCP PHASE2:Mm9::chr10:116715054..116715061,-#_428513479930f4a8961c2ad335439fb7p@chr10:116715054..116715061, -
1.73e-30FFCP PHASE1:Mm9::chr1:173159866..173159877,-#_428513479930f4a8961c2ad335439fb7p@chr1:173159866..173159877, -
1.73e-30FFCP PHASE2:Mm9::chr5:121337607..121337621,-#_428513479930f4a8961c2ad335439fb7p1@Oas1g
1.73e-30FFCP PHASE1:Mm9::chr6:116583427..116583433,-#_428513479930f4a8961c2ad335439fb7p@chr6:116583427..116583433, -
1.73e-30FFCP PHASE1:Mm9::chr6:122805870..122805874,-#_428513479930f4a8961c2ad335439fb7p@chr6:122805870..122805874, -
1.73e-30FFCP PHASE1:Mm9::chrX:106302357..106302360,+#_428513479930f4a8961c2ad335439fb7p@chrX:106302357..106302360, +
1.73e-30FFCP PHASE1:Mm9::chr5:121337607..121337621,-#_428513479930f4a8961c2ad335439fb7p1@Oas1g
1.73e-30FFCP PHASE2:Mm9::chr6:122805870..122805874,-#_428513479930f4a8961c2ad335439fb7p@chr6:122805870..122805874, -
1.73e-30FFCP PHASE1:Mm9::chr10:116715054..116715061,-#_428513479930f4a8961c2ad335439fb7p@chr10:116715054..116715061, -
1.73e-30FFCP PHASE2:Mm9::chrX:106302357..106302360,+#_428513479930f4a8961c2ad335439fb7p@chrX:106302357..106302360, +
1.73e-30FFCP PHASE2:Mm9::chr17:57501115..57501124,+#_428513479930f4a8961c2ad335439fb7p@chr17:57501115..57501124, +
1.73e-30FFCP PHASE1:Mm9::chr17:57501115..57501124,+#_428513479930f4a8961c2ad335439fb7p@chr17:57501115..57501124, +
1.73e-30FFCP PHASE1:Mm9::chr7:128207682..128207698,-#_428513479930f4a8961c2ad335439fb7p@chr7:128207682..128207698, -
1.73e-30FFCP PHASE2:Mm9::chr7:128207682..128207698,-#_428513479930f4a8961c2ad335439fb7p@chr7:128207682..128207698, -
2.43e-30FFCP PHASE2:Mm9::chr11:69479320..69479327,-#_f704dd81a5f70c780745ad44275c3460p@chr11:69479320..69479327, -
2.43e-30FFCP PHASE1:Mm9::chr13:103496369..103496373,+#_f704dd81a5f70c780745ad44275c3460p@chr13:103496369..103496373, +
2.43e-30FFCP PHASE1:Mm9::chr11:69479320..69479327,-#_f704dd81a5f70c780745ad44275c3460p@chr11:69479320..69479327, -
2.43e-30FFCP PHASE2:Mm9::chr13:103496369..103496373,+#_f704dd81a5f70c780745ad44275c3460p@chr13:103496369..103496373, +

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