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Difference between revisions of "CL:0002571"

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{{CL
 
{{CL
|id=CL:0002571
+
|alt_id=
|name=hepatic mesenchymal stem cell
 
|namespace=cell
 
|def="A mesenchymal stem cell of liver." [GOC:tfm]
 
|xref=
 
|is_a=CL:0000134;;CL:0002195
 
|synonym=
 
 
|comment=
 
|comment=
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=tmeehan
 
|created_by=tmeehan
|obo_creation_date=2011-03-01T09:58:51Z
+
|def="A mesenchymal stem cell of liver." [GOC:tfm]
|subset=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=CL:0002571
 +
|is_a=CL:0000134 ;;CL:0002195
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=hepatic mesenchymal stem cell
 +
|namespace=cell
 +
|obo_creation_date=2011-03-01T09:58:51Z
 
|part_of=UBERON:0002107
 
|part_of=UBERON:0002107
 +
|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
+
|subset=
|preceded_by=
+
|synonym=
 +
|union_of=
 +
|xref=
 
}}
 
}}

Revision as of 01:29, 12 September 2014

Name:hepatic mesenchymal stem cell
Namespace:cell
Definition:"A mesenchymal stem cell of liver." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-01T09:58:51Z


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000134(mesenchymal cell),CL:0002195(hepatic stem cell)
part_of:UBERON:0002107(liver)



Children


derives from:FF:0000098 (human hepatic mesenchymal stem cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002571 (hepatic mesenchymal stem cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
3.29e-195FFCP PHASE1:Hg19::chr5:148586717..148586723,+#_238e02bf54d24bc206a3976b2bfaaf36p@chr5:148586717..148586723, +
3.29e-195FFCP PHASE2:Hg19::chr5:148586717..148586723,+#_238e02bf54d24bc206a3976b2bfaaf36p@chr5:148586717..148586723, +
3.29e-195FFCP PHASE1:Hg19::chr10:91939935..91939941,+#_238e02bf54d24bc206a3976b2bfaaf36p@chr10:91939935..91939941, +
3.29e-195FFCP PHASE2:Hg19::chr10:91939935..91939941,+#_238e02bf54d24bc206a3976b2bfaaf36p@chr10:91939935..91939941, +
4.61e-131FFCP PHASE2:Hg19::chr20:35695582..35695602,-#_926b16ea60d232836b2907ae007a8758p@chr20:35695582..35695602, -
4.61e-131FFCP PHASE1:Hg19::chr5:148600871..148600881,-#_926b16ea60d232836b2907ae007a8758-, p@chr5:148600871..148600881
4.61e-131FFCP PHASE1:Hg19::chr20:35695582..35695602,-#_926b16ea60d232836b2907ae007a8758p@chr20:35695582..35695602, -
4.61e-131FFCP PHASE2:Hg19::chr5:148600871..148600881,-#_926b16ea60d232836b2907ae007a8758p@chr5:148600871..148600881, -
1.75e-130FFCP PHASE1:Hg19::chr4:175131715..175131722,+#_dc46449212cb4333327956f508ccbb7fp@chr4:175131715..175131722, +
1.75e-130FFCP PHASE2:Hg19::chr4:175131715..175131722,+#_dc46449212cb4333327956f508ccbb7fp@chr4:175131715..175131722, +
2.56e-98FFCP PHASE2:Hg19::chr9:94955376..94955381,+#_2882e9ef0aa4e9ec4c8fa0dccb967f0ap@chr9:94955376..94955381, +
2.56e-98FFCP PHASE1:Hg19::chr9:94955376..94955381,+#_2882e9ef0aa4e9ec4c8fa0dccb967f0ap@chr9:94955376..94955381, +
2.56e-98FFCP PHASE1:Hg19::chr14:65105965..65105968,-#_2882e9ef0aa4e9ec4c8fa0dccb967f0ap@chr14:65105965..65105968, -
2.56e-98FFCP PHASE2:Hg19::chr14:65105965..65105968,-#_2882e9ef0aa4e9ec4c8fa0dccb967f0ap@chr14:65105965..65105968, -
3.96e-66FFCP PHASE2:Hg19::chr22:25091949..25091962,-#_789fc9f53012c69ebd616e7d604193a4p@chr22:25091949..25091962, -
3.96e-66FFCP PHASE1:Hg19::chr22:25091949..25091962,-#_789fc9f53012c69ebd616e7d604193a4p@chr22:25091949..25091962, -
1.08e-65FFCP PHASE2:Hg19::chr20:49269691..49269695,+#_c58c0bd62446463f7ae38d97c19be530p1@ENST00000435177
1.08e-65FFCP PHASE1:Hg19::chr20:49269691..49269695,+#_c58c0bd62446463f7ae38d97c19be530p1@ENST00000435177
1.08e-65FFCP PHASE2:Hg19::chr18:72618246..72618294,-#_c58c0bd62446463f7ae38d97c19be530p@chr18:72618246..72618294, -
1.08e-65FFCP PHASE1:Hg19::chr18:72618246..72618294,-#_c58c0bd62446463f7ae38d97c19be530p@chr18:72618246..72618294, -
2.02e-57FFCP PHASE1:Hg19::chr10:92178805..92178827,+#_4ab0c037ebed375c658a5ce3922262c6p@chr10:92178805..92178827, +
2.02e-57FFCP PHASE2:Hg19::chr10:92178805..92178827,+#_4ab0c037ebed375c658a5ce3922262c6p@chr10:92178805..92178827, +
1.13e-56FFCP PHASE1:Hg19::chr4:86683248..86683251,+#_14342ea78da5707c039b3bdee5ced4ecp@chr4:86683248..86683251, +
1.13e-56FFCP PHASE2:Hg19::chr4:86683248..86683251,+#_14342ea78da5707c039b3bdee5ced4ecp@chr4:86683248..86683251, +
1.5e-56FFCP PHASE1:Hg19::chr9:112889870..112889881,+#_fce2b552a15047b2327834336d457400p24@AKAP2, p26@PALM2-AKAP2
1.5e-56FFCP PHASE2:Hg19::chr9:112889870..112889881,+#_fce2b552a15047b2327834336d457400p24@AKAP2, p26@PALM2-AKAP2
1.46e-50FFCP PHASE1:Hg19::chr9:12701369..12701379,+#_c4709f6b3d26b75a67c18c0ad9f0325dp29@TYRP1
1.46e-50FFCP PHASE2:Hg19::chr9:12701369..12701379,+#_c4709f6b3d26b75a67c18c0ad9f0325dp29@TYRP1
2.74e-50FFCP PHASE2:Hg19::chr2:55831402..55831405,-#_59be82174d64ea56eb1a1b1e533a334bp19@SMEK2
2.74e-50FFCP PHASE1:Hg19::chr2:55831402..55831405,-#_59be82174d64ea56eb1a1b1e533a334bp19@SMEK2
5.15e-50FFCP PHASE1:Hg19::chr4:175135724..175135735,-#_34f634a981ae51a69536ed1baa019bc0p@chr4:175135724..175135735, -
5.15e-50FFCP PHASE2:Hg19::chr4:175135724..175135735,-#_34f634a981ae51a69536ed1baa019bc0p@chr4:175135724..175135735, -
1.09e-49FFCP PHASE2:Hg19::chr2:216995311..216995323,+#_e20be8d5998a2521c467bce6ef1211f2p27@XRCC5
1.09e-49FFCP PHASE1:Hg19::chr2:216995311..216995323,+#_e20be8d5998a2521c467bce6ef1211f2p27@XRCC5
1.09e-49FFCP PHASE2:Hg19::chr18:77558264..77558310,+#_e20be8d5998a2521c467bce6ef1211f2p@chr18:77558264..77558310, +
1.09e-49FFCP PHASE1:Hg19::chr18:77558264..77558310,+#_e20be8d5998a2521c467bce6ef1211f2p@chr18:77558264..77558310, +
4.0e-45FFCP PHASE1:Hg19::chr15:56208964..56208977,-#_0af6adfc5749057cb18b36c16be7c3a2p11@NEDD4
4.0e-45FFCP PHASE2:Hg19::chr15:56208964..56208977,-#_0af6adfc5749057cb18b36c16be7c3a2p11@NEDD4
7.83e-45FFCP PHASE2:Hg19::chr1:235123146..235123150,-#_f262262ab5fdfdfe2e7f4dd2fe55d038-, p@chr1:235123146..235123150
7.83e-45FFCP PHASE1:Hg19::chr1:235123146..235123150,-#_f262262ab5fdfdfe2e7f4dd2fe55d038p@chr1:235123146..235123150, -
3.99e-41FFCP PHASE2:Hg19::chr20:35695476..35695506,-#_e5bf37a7783d3ee7207cbae18fb83163p@chr20:35695476..35695506, -
3.99e-41FFCP PHASE1:Hg19::chr20:35695476..35695506,-#_e5bf37a7783d3ee7207cbae18fb83163p@chr20:35695476..35695506, -
5.99e-41FFCP PHASE1:Hg19::chr4:175131785..175131801,+#_948bf61c6527f896d3f97fb2f660b61dp@chr4:175131785..175131801, +
5.99e-41FFCP PHASE2:Hg19::chr4:175131785..175131801,+#_948bf61c6527f896d3f97fb2f660b61dp@chr4:175131785..175131801, +
6.7e-40FFCP PHASE1:Hg19::chr11:9588526..9588534,+#_62c2a070d097acecb0c8e903193794ecp@chr11:9588526..9588534, +
6.7e-40FFCP PHASE2:Hg19::chr11:9588526..9588534,+#_62c2a070d097acecb0c8e903193794ecp@chr11:9588526..9588534, +
9.99e-40FFCP PHASE1:Hg19::chr4:174440289..174440300,-#_14926fd74679da20fe7c3b22499822f6p@chr4:174440289..174440300, -
9.99e-40FFCP PHASE2:Hg19::chr4:174440289..174440300,-#_14926fd74679da20fe7c3b22499822f6p@chr4:174440289..174440300, -
1.57e-37FFCP PHASE2:Hg19::chr7:136759435..136759447,+#_2a683b3bf27b9b8889720dbee5f2e08d+, p@chr7:136759435..136759447
1.57e-37FFCP PHASE1:Hg19::chr7:136759435..136759447,+#_2a683b3bf27b9b8889720dbee5f2e08dp@chr7:136759435..136759447, +
9.84e-37FFCP PHASE2:Hg19::chr9:12701351..12701368,+#_6f11d956714f11c1a3e6e171177557c1p21@TYRP1
9.84e-37FFCP PHASE1:Hg19::chr9:12701351..12701368,+#_6f11d956714f11c1a3e6e171177557c1p21@TYRP1
1.18e-36FFCP PHASE2:Hg19::chr20:44410265..44410286,-#_47c144ebabe1df1f9eb1af46c1ccab1cp@chr20:44410265..44410286, -
1.18e-36FFCP PHASE1:Hg19::chr20:44410265..44410286,-#_47c144ebabe1df1f9eb1af46c1ccab1cp@chr20:44410265..44410286, -
2.45e-36FFCP PHASE2:Hg19::chr1:109935515..109935518,-#_051e3b983882824a7ea4274ab5138ba4p@chr1:109935515..109935518, -
2.45e-36FFCP PHASE1:Hg19::chr1:109935515..109935518,-#_051e3b983882824a7ea4274ab5138ba4p@chr1:109935515..109935518, -
1.11e-34FFCP PHASE2:Hg19::chr10:92173191..92173202,+#_87f4dbdec69ae53223af6bb6026019bep@chr10:92173191..92173202, +
1.11e-34FFCP PHASE1:Hg19::chr10:92173191..92173202,+#_87f4dbdec69ae53223af6bb6026019bep@chr10:92173191..92173202, +
7.05e-34FFCP PHASE1:Hg19::chr16:89686480..89686486,+#_a8004727e0d9a4b738472e064b38922bp@chr16:89686480..89686486, +
7.05e-34FFCP PHASE2:Hg19::chr4:174460524..174460526,+#_a8004727e0d9a4b738472e064b38922bp2@NBLA00301
7.05e-34FFCP PHASE1:Hg19::chr13:37420608..37420609,-#_a8004727e0d9a4b738472e064b38922bp@chr13:37420608..37420609, -
7.05e-34FFCP PHASE2:Hg19::chrX:47509466..47509475,-#_a8004727e0d9a4b738472e064b38922bp@chrX:47509466..47509475, -
7.05e-34FFCP PHASE1:Hg19::chr4:174460524..174460526,+#_a8004727e0d9a4b738472e064b38922bp2@NBLA00301
7.05e-34FFCP PHASE2:Hg19::chr13:37420608..37420609,-#_a8004727e0d9a4b738472e064b38922bp@chr13:37420608..37420609, -
7.05e-34FFCP PHASE1:Hg19::chrX:47509466..47509475,-#_a8004727e0d9a4b738472e064b38922bp@chrX:47509466..47509475, -
7.05e-34FFCP PHASE2:Hg19::chr16:89686480..89686486,+#_a8004727e0d9a4b738472e064b38922bp@chr16:89686480..89686486, +
8.39e-34FFCP PHASE1:Hg19::chr2:38148042..38148060,+#_bc768dc3847dda896c1771088da675b6p@chr2:38148042..38148060, +
8.39e-34FFCP PHASE2:Hg19::chr2:38148042..38148060,+#_bc768dc3847dda896c1771088da675b6p@chr2:38148042..38148060, +
1.17e-33FFCP PHASE1:Hg19::chrX:107681458..107681465,-#_efe7f525dac10ae73f90f58a0f414c76p7@COL4A6
1.17e-33FFCP PHASE2:Hg19::chrX:107681458..107681465,-#_efe7f525dac10ae73f90f58a0f414c76p7@COL4A6
1.64e-33FFCP PHASE1:Hg19::chr12:105258734..105258750,+#_8ade20a76713b3a592b5fceb9fb94336p@chr12:105258734..105258750, +
1.64e-33FFCP PHASE2:Hg19::chr12:105258734..105258750,+#_8ade20a76713b3a592b5fceb9fb94336p@chr12:105258734..105258750, +
1.93e-33FFCP PHASE2:Hg19::chr9:12701203..12701216,+#_71ece31a484b22a8069101d9b60a82cfp18@TYRP1
1.93e-33FFCP PHASE1:Hg19::chr9:12701203..12701216,+#_71ece31a484b22a8069101d9b60a82cfp18@TYRP1
5.37e-32FFCP PHASE1:Hg19::chr2:188415649..188415664,-#_bcc772d1dd475dada70d2cd7e21ff3dap@chr2:188415649..188415664, -
5.37e-32FFCP PHASE2:Hg19::chr2:188415649..188415664,-#_bcc772d1dd475dada70d2cd7e21ff3dap@chr2:188415649..188415664, -
1.17e-31FFCP PHASE2:Hg19::chr2:102720962..102720971,+#_8f547d4bc80df1f24a67499de4dbe25dp27@IL1R1
1.17e-31FFCP PHASE1:Hg19::chr2:102720962..102720971,+#_8f547d4bc80df1f24a67499de4dbe25dp27@IL1R1
1.37e-31FFCP PHASE2:Hg19::chr13:94958134..94958164,+#_3a510958cbd46683551edd6826125d89p@chr13:94958134..94958164, +
1.37e-31FFCP PHASE1:Hg19::chr13:94958134..94958164,+#_3a510958cbd46683551edd6826125d89p@chr13:94958134..94958164, +
4.04e-31FFCP PHASE2:Hg19::chrX:47373179..47373190,-#_f6a0d96ecbb46e8ece0b9108c9cd12b6p2@NUS1P1
4.04e-31FFCP PHASE2:Hg19::chr16:89687026..89687041,+#_f6a0d96ecbb46e8ece0b9108c9cd12b6p7@DPEP1
4.04e-31FFCP PHASE2:Hg19::chrX:119254455..119254468,+#_f6a0d96ecbb46e8ece0b9108c9cd12b6p1@ENST00000555831, p1@ENST00000557073
4.04e-31FFCP PHASE1:Hg19::chr16:89687026..89687041,+#_f6a0d96ecbb46e8ece0b9108c9cd12b6p7@DPEP1
4.04e-31FFCP PHASE1:Hg19::chrX:119254455..119254468,+#_f6a0d96ecbb46e8ece0b9108c9cd12b6p1@ENST00000555831, p1@ENST00000557073
4.04e-31FFCP PHASE1:Hg19::chrX:47373179..47373190,-#_f6a0d96ecbb46e8ece0b9108c9cd12b6p2@NUS1P1
5.5e-31FFCP PHASE1:Hg19::chr14:52508902..52508921,-#_74ddcdd68d40305d2369d46437457330p5@NID2
5.5e-31FFCP PHASE2:Hg19::chr14:52508902..52508921,-#_74ddcdd68d40305d2369d46437457330p5@NID2
4.49e-30FFCP PHASE1:Hg19::chr17:6658878..6658889,+#_a688b302f5e39e3383b523719905c1e6p9@XAF1
4.49e-30FFCP PHASE2:Hg19::chr17:6658878..6658889,+#_a688b302f5e39e3383b523719905c1e6p9@XAF1
1.08e-29FFCP PHASE1:Hg19::chr5:121490583..121490596,-#_272a8c34a3e19c9934a76f0e24237957p1@ENST00000504829
1.08e-29FFCP PHASE2:Hg19::chr5:121490583..121490596,-#_272a8c34a3e19c9934a76f0e24237957p1@ENST00000504829
9.3e-29FFCP PHASE2:Hg19::chr2:121480592..121480601,+#_c80bd159da2fc1f08471233a78ac81b8p@chr2:121480592..121480601, +
9.3e-29FFCP PHASE1:Hg19::chr2:121480592..121480601,+#_c80bd159da2fc1f08471233a78ac81b8p@chr2:121480592..121480601, +
4.13e-28FFCP PHASE1:Hg19::chr12:100867777..100867788,+#_b5aef320e17613174790ae4d883acbc4p5@NR1H4
4.13e-28FFCP PHASE2:Hg19::chr12:100867777..100867788,+#_b5aef320e17613174790ae4d883acbc4p5@NR1H4
2.09e-27FFCP PHASE1:Hg19::chr10:102122643..102122654,+#_8d48cb7fecf05340414dbcc073b1a58ap@chr10:102122643..102122654, +
2.09e-27FFCP PHASE2:Hg19::chr10:102122643..102122654,+#_8d48cb7fecf05340414dbcc073b1a58ap@chr10:102122643..102122654, +
7.96e-27FFCP PHASE1:Hg19::chr12:10331605..10331616,+#_f28d92d0d150b2dd442a8b8c94bc4a7cp5@C12orf59
7.96e-27FFCP PHASE2:Hg19::chr12:10331605..10331616,+#_f28d92d0d150b2dd442a8b8c94bc4a7cp5@C12orf59