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Difference between revisions of "CL:0002625"

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Revision as of 04:05, 27 June 2012

Name:seminiferous tubule epithelial cell
Namespace:cell
Definition:"A cell of the seminiferous tubule epithelium." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-15T11:59:23Z


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000077(mesothelial cell)
part_of:UBERON:0004813(seminiferous tubule epithelium)



Children


is a:CL:0000216 (Sertoli cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002625 (seminiferous tubule epithelial cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr11:27721743..27721753,-#_7e759df653f21cf5931b340830acd369p26@BDNF
5.42e-195FFCP PHASE2:Hg19::chr11:27721743..27721753,-#_7e759df653f21cf5931b340830acd369p26@BDNF
9.37e-99FFCP PHASE1:Hg19::chr1:227505905..227505906,-#_61979be5003f3a44b1fbb50a48ef9d23p43@CDC42BPA
9.37e-99FFCP PHASE2:Hg19::chr3:158450428..158450431,-#_61979be5003f3a44b1fbb50a48ef9d23p9@RARRES1
9.37e-99FFCP PHASE1:Hg19::chr3:158450428..158450431,-#_61979be5003f3a44b1fbb50a48ef9d23p9@RARRES1
9.37e-99FFCP PHASE2:Hg19::chr1:227505905..227505906,-#_61979be5003f3a44b1fbb50a48ef9d23p43@CDC42BPA
2.55e-98FFCP PHASE1:Hg19::chr8:47529304..47529311,-#_5e35336ec2bcd2c38ed9e846853f13cbp@chr8:47529304..47529311, -
2.55e-98FFCP PHASE1:Hg19::chr8:69832864..69832865,+#_5e35336ec2bcd2c38ed9e846853f13cb+, p@chr8:69832864..69832865
2.55e-98FFCP PHASE2:Hg19::chr3:193356854..193356864,+#_5e35336ec2bcd2c38ed9e846853f13cbp@chr3:193356854..193356864, +
2.55e-98FFCP PHASE2:Hg19::chr19:40320572..40320586,-#_5e35336ec2bcd2c38ed9e846853f13cbp@chr19:40320572..40320586, -
2.55e-98FFCP PHASE1:Hg19::chr7:89874193..89874199,+#_5e35336ec2bcd2c38ed9e846853f13cbp7@C7orf63
2.55e-98FFCP PHASE1:Hg19::chr7:18206831..18206833,+#_5e35336ec2bcd2c38ed9e846853f13cbp@chr7:18206831..18206833, +
2.55e-98FFCP PHASE1:Hg19::chr3:193356854..193356864,+#_5e35336ec2bcd2c38ed9e846853f13cbp@chr3:193356854..193356864, +
2.55e-98FFCP PHASE1:Hg19::chr3:170430340..170430344,+#_5e35336ec2bcd2c38ed9e846853f13cbp@chr3:170430340..170430344, +
2.55e-98FFCP PHASE2:Hg19::chr7:18206831..18206833,+#_5e35336ec2bcd2c38ed9e846853f13cbp@chr7:18206831..18206833, +
2.55e-98FFCP PHASE1:Hg19::chr19:54600897..54600899,+#_5e35336ec2bcd2c38ed9e846853f13cbp@chr19:54600897..54600899, +
2.55e-98FFCP PHASE2:Hg19::chr8:47529304..47529311,-#_5e35336ec2bcd2c38ed9e846853f13cbp@chr8:47529304..47529311, -
2.55e-98FFCP PHASE1:Hg19::chr13:53030077..53030083,-#_5e35336ec2bcd2c38ed9e846853f13cbp@chr13:53030077..53030083, -
2.55e-98FFCP PHASE2:Hg19::chr19:54600897..54600899,+#_5e35336ec2bcd2c38ed9e846853f13cbp@chr19:54600897..54600899, +
2.55e-98FFCP PHASE1:Hg19::chr2:9519086..9519101,+#_5e35336ec2bcd2c38ed9e846853f13cbp@chr2:9519086..9519101, +
2.55e-98FFCP PHASE2:Hg19::chr7:89874193..89874199,+#_5e35336ec2bcd2c38ed9e846853f13cbp7@C7orf63
2.55e-98FFCP PHASE2:Hg19::chr8:69832864..69832865,+#_5e35336ec2bcd2c38ed9e846853f13cbp@chr8:69832864..69832865, +
2.55e-98FFCP PHASE2:Hg19::chr3:170430340..170430344,+#_5e35336ec2bcd2c38ed9e846853f13cbp@chr3:170430340..170430344, +
2.55e-98FFCP PHASE2:Hg19::chr13:53030077..53030083,-#_5e35336ec2bcd2c38ed9e846853f13cbp@chr13:53030077..53030083, -
2.55e-98FFCP PHASE1:Hg19::chr19:40320572..40320586,-#_5e35336ec2bcd2c38ed9e846853f13cbp@chr19:40320572..40320586, -
2.55e-98FFCP PHASE2:Hg19::chr2:9519086..9519101,+#_5e35336ec2bcd2c38ed9e846853f13cbp@chr2:9519086..9519101, +
1.23e-66FFCP PHASE2:Hg19::chr2:19551668..19551679,-#_9cbb88826ea56e9192bea92c6749de6cp@chr2:19551668..19551679, -
1.23e-66FFCP PHASE1:Hg19::chr2:19551668..19551679,-#_9cbb88826ea56e9192bea92c6749de6cp@chr2:19551668..19551679, -
2.39e-66FFCP PHASE2:Hg19::chr2:72803155..72803204,-#_28574594d2f2813a9fb8aaeeaf491518p@chr2:72803155..72803204, -
2.39e-66FFCP PHASE1:Hg19::chr3:112931461..112931474,-#_28574594d2f2813a9fb8aaeeaf491518p@chr3:112931461..112931474, -
2.39e-66FFCP PHASE2:Hg19::chr3:112931461..112931474,-#_28574594d2f2813a9fb8aaeeaf491518p@chr3:112931461..112931474, -
2.39e-66FFCP PHASE2:Hg19::chr12:15815732..15815744,-#_28574594d2f2813a9fb8aaeeaf491518p21@EPS8
2.39e-66FFCP PHASE2:Hg19::chr1:197889533..197889548,+#_28574594d2f2813a9fb8aaeeaf491518p@chr1:197889533..197889548, +
2.39e-66FFCP PHASE1:Hg19::chr12:15815732..15815744,-#_28574594d2f2813a9fb8aaeeaf491518p21@EPS8
2.39e-66FFCP PHASE2:Hg19::chr7:98445585..98445594,-#_28574594d2f2813a9fb8aaeeaf491518p22@TMEM130
2.39e-66FFCP PHASE1:Hg19::chr2:72803155..72803204,-#_28574594d2f2813a9fb8aaeeaf491518p@chr2:72803155..72803204, -
2.39e-66FFCP PHASE1:Hg19::chr7:98445585..98445594,-#_28574594d2f2813a9fb8aaeeaf491518p22@TMEM130
2.39e-66FFCP PHASE1:Hg19::chr1:197889533..197889548,+#_28574594d2f2813a9fb8aaeeaf491518p@chr1:197889533..197889548, +
4.66e-66FFCP PHASE2:Hg19::chr21:48080873..48080878,+#_8549e3b66b5f4a4199b4700e34b76099p@chr21:48080873..48080878, +
4.66e-66FFCP PHASE2:Hg19::chr8:141728731..141728740,-#_8549e3b66b5f4a4199b4700e34b76099p38@PTK2
4.66e-66FFCP PHASE2:Hg19::chr10:1034666..1034675,+#_8549e3b66b5f4a4199b4700e34b76099p4@GTPBP4
4.66e-66FFCP PHASE1:Hg19::chr8:141728731..141728740,-#_8549e3b66b5f4a4199b4700e34b76099p38@PTK2
4.66e-66FFCP PHASE1:Hg19::chr3:170916991..170916995,-#_8549e3b66b5f4a4199b4700e34b76099p@chr3:170916991..170916995, -
4.66e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_8549e3b66b5f4a4199b4700e34b76099p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE1:Hg19::chr10:1034666..1034675,+#_8549e3b66b5f4a4199b4700e34b76099p4@GTPBP4
4.66e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_8549e3b66b5f4a4199b4700e34b76099p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE1:Hg19::chr21:48080873..48080878,+#_8549e3b66b5f4a4199b4700e34b76099p@chr21:48080873..48080878, +
4.66e-66FFCP PHASE2:Hg19::chr3:99984127..99984138,+#_8549e3b66b5f4a4199b4700e34b76099p@chr3:99984127..99984138, +
4.66e-66FFCP PHASE1:Hg19::chr3:99984127..99984138,+#_8549e3b66b5f4a4199b4700e34b76099p@chr3:99984127..99984138, +
4.66e-66FFCP PHASE2:Hg19::chr3:170916991..170916995,-#_8549e3b66b5f4a4199b4700e34b76099p@chr3:170916991..170916995, -
4.66e-66FFCP PHASE2:Hg19::chr5:90830481..90830492,+#_8549e3b66b5f4a4199b4700e34b76099p@chr5:90830481..90830492, +
4.66e-66FFCP PHASE1:Hg19::chr5:90830481..90830492,+#_8549e3b66b5f4a4199b4700e34b76099p@chr5:90830481..90830492, +
1.46e-50FFCP PHASE2:Hg19::chr11:114173606..114173612,+#_1afa7bd3853d43a79dc740fc365e74efp@chr11:114173606..114173612, +
1.46e-50FFCP PHASE1:Hg19::chr6:134210772..134210782,+#_1afa7bd3853d43a79dc740fc365e74efp8@TCF21
1.46e-50FFCP PHASE1:Hg19::chr11:114173606..114173612,+#_1afa7bd3853d43a79dc740fc365e74efp@chr11:114173606..114173612, +
1.46e-50FFCP PHASE2:Hg19::chr2:177009137..177009140,+#_1afa7bd3853d43a79dc740fc365e74efp@chr2:177009137..177009140, +
1.46e-50FFCP PHASE2:Hg19::chr6:134210772..134210782,+#_1afa7bd3853d43a79dc740fc365e74efp8@TCF21
1.46e-50FFCP PHASE1:Hg19::chr2:177009137..177009140,+#_1afa7bd3853d43a79dc740fc365e74efp@chr2:177009137..177009140, +
2.42e-50FFCP PHASE2:Hg19::chr7:137564648..137564658,-#_581e80a2eba07275caaf4a53b55328f1p32@CREB3L2
2.42e-50FFCP PHASE1:Hg19::chr2:55459485..55459491,-#_581e80a2eba07275caaf4a53b55328f1p6@C2orf63
2.42e-50FFCP PHASE2:Hg19::chr2:55459485..55459491,-#_581e80a2eba07275caaf4a53b55328f1p6@C2orf63
2.42e-50FFCP PHASE1:Hg19::chr21:17214724..17214740,+#_581e80a2eba07275caaf4a53b55328f1p11@USP25
2.42e-50FFCP PHASE1:Hg19::chr19:54024454..54024463,+#_581e80a2eba07275caaf4a53b55328f1p31@ZNF331
2.42e-50FFCP PHASE2:Hg19::chr3:46477553..46477563,-#_581e80a2eba07275caaf4a53b55328f1p@chr3:46477553..46477563, -
2.42e-50FFCP PHASE1:Hg19::chr5:144875561..144875565,+#_581e80a2eba07275caaf4a53b55328f1p@chr5:144875561..144875565, +
2.42e-50FFCP PHASE2:Hg19::chr5:144875561..144875565,+#_581e80a2eba07275caaf4a53b55328f1p@chr5:144875561..144875565, +
2.42e-50FFCP PHASE2:Hg19::chr15:39288691..39288698,+#_581e80a2eba07275caaf4a53b55328f1p@chr15:39288691..39288698, +
2.42e-50FFCP PHASE1:Hg19::chr7:137564648..137564658,-#_581e80a2eba07275caaf4a53b55328f1p32@CREB3L2
2.42e-50FFCP PHASE2:Hg19::chr21:17214724..17214740,+#_581e80a2eba07275caaf4a53b55328f1p11@USP25
2.42e-50FFCP PHASE1:Hg19::chr3:46477553..46477563,-#_581e80a2eba07275caaf4a53b55328f1-, p@chr3:46477553..46477563
2.42e-50FFCP PHASE2:Hg19::chr19:54024454..54024463,+#_581e80a2eba07275caaf4a53b55328f1p31@ZNF331
2.42e-50FFCP PHASE1:Hg19::chr15:39288691..39288698,+#_581e80a2eba07275caaf4a53b55328f1p@chr15:39288691..39288698, +
3.99e-50FFCP PHASE2:Hg19::chr15:39420650..39420666,+#_0a809deb07e4bad34171e8bab09ff1cep@chr15:39420650..39420666, +
3.99e-50FFCP PHASE2:Hg19::chr14:64804787..64804796,-#_0a809deb07e4bad34171e8bab09ff1cep10@ESR2
3.99e-50FFCP PHASE1:Hg19::chr15:39420650..39420666,+#_0a809deb07e4bad34171e8bab09ff1cep@chr15:39420650..39420666, +
3.99e-50FFCP PHASE1:Hg19::chr14:64804787..64804796,-#_0a809deb07e4bad34171e8bab09ff1cep10@ESR2
3.99e-50FFCP PHASE2:Hg19::chr11:829412..829430,+#_0a809deb07e4bad34171e8bab09ff1cep11@EFCAB4A
3.99e-50FFCP PHASE1:Hg19::chr4:103969123..103969127,-#_0a809deb07e4bad34171e8bab09ff1cep@chr4:103969123..103969127, -
3.99e-50FFCP PHASE1:Hg19::chr12:5198350..5198359,+#_0a809deb07e4bad34171e8bab09ff1cep@chr12:5198350..5198359, +
3.99e-50FFCP PHASE2:Hg19::chr4:103969123..103969127,-#_0a809deb07e4bad34171e8bab09ff1cep@chr4:103969123..103969127, -
3.99e-50FFCP PHASE1:Hg19::chr11:829412..829430,+#_0a809deb07e4bad34171e8bab09ff1cep11@EFCAB4A
3.99e-50FFCP PHASE2:Hg19::chr12:5198350..5198359,+#_0a809deb07e4bad34171e8bab09ff1cep@chr12:5198350..5198359, +
6.58e-50FFCP PHASE1:Hg19::chr17:58165788..58165794,-#_bdd864286a792d39ce8123f734123224p1@LOC645638
6.58e-50FFCP PHASE2:Hg19::chr17:58165788..58165794,-#_bdd864286a792d39ce8123f734123224p1@LOC645638
6.58e-50FFCP PHASE1:Hg19::chr16:1203194..1203207,+#_bdd864286a792d39ce8123f734123224p3@CACNA1H
6.58e-50FFCP PHASE1:Hg19::chr14:50697797..50697820,-#_bdd864286a792d39ce8123f734123224p13@SOS2
6.58e-50FFCP PHASE2:Hg19::chr16:1203194..1203207,+#_bdd864286a792d39ce8123f734123224p3@CACNA1H
6.58e-50FFCP PHASE2:Hg19::chr7:92462738..92462749,-#_bdd864286a792d39ce8123f734123224p51@CDK6
6.58e-50FFCP PHASE1:Hg19::chr7:92462738..92462749,-#_bdd864286a792d39ce8123f734123224p51@CDK6
6.58e-50FFCP PHASE2:Hg19::chr14:50697797..50697820,-#_bdd864286a792d39ce8123f734123224p13@SOS2
6.62e-41FFCP PHASE2:Hg19::chr3:194214959..194214968,-#_2da1c9aaf17abe809b574175f1d67b08p@chr3:194214959..194214968, -
6.62e-41FFCP PHASE1:Hg19::chr3:194214959..194214968,-#_2da1c9aaf17abe809b574175f1d67b08p@chr3:194214959..194214968, -
9.91e-41FFCP PHASE1:Hg19::chr11:77282391..77282402,+#_4903c84de54083760717d12debdf262ep@chr11:77282391..77282402, +
9.91e-41FFCP PHASE1:Hg19::chr13:49549473..49549480,+#_4903c84de54083760717d12debdf262ep@chr13:49549473..49549480, +
9.91e-41FFCP PHASE1:Hg19::chr8:125193673..125193689,-#_4903c84de54083760717d12debdf262ep@chr8:125193673..125193689, -
9.91e-41FFCP PHASE1:Hg19::chr15:34522001..34522013,+#_4903c84de54083760717d12debdf262ep@chr15:34522001..34522013, +
9.91e-41FFCP PHASE2:Hg19::chr2:102604493..102604499,+#_4903c84de54083760717d12debdf262ep@chr2:102604493..102604499, +
9.91e-41FFCP PHASE2:Hg19::chr15:34522001..34522013,+#_4903c84de54083760717d12debdf262ep@chr15:34522001..34522013, +
9.91e-41FFCP PHASE1:Hg19::chr19:48244695..48244702,+#_4903c84de54083760717d12debdf262ep14@EHD2
9.91e-41FFCP PHASE1:Hg19::chr11:94822746..94822757,+#_4903c84de54083760717d12debdf262ep8@ENDOD1