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(Created page with "{{CL |id=CL:1001319 |name=bladder cell |namespace=cell |def= |xref=KUPO:0001120 |is_a=CL:0000548 |synonym= |comment= |alt_id= |disjoint_from= |union_of= |created_b...")
 
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Revision as of 08:42, 15 June 2012

Name:bladder cell
Namespace:cell
Xrefs:
links:
KUPO:0001120


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000548(animal cell)
part_of:UBERON:0001255(urinary bladder)



Children


is a:CL:0002597 (smooth muscle cell of bladder)
derives from:FF:0102868 (bladder transitional cell carcinoma cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1001319 (bladder cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr10:5660248..5660254,-#_550ab590271d4f07900de501f3324428p2@ENST00000427341
5.42e-195FFCP PHASE1:Hg19::chr15:101282110..101282113,+#_550ab590271d4f07900de501f3324428p@chr15:101282110..101282113, +
5.42e-195FFCP PHASE2:Hg19::chr15:101282110..101282113,+#_550ab590271d4f07900de501f3324428p@chr15:101282110..101282113, +
5.42e-195FFCP PHASE1:Hg19::chr10:5660248..5660254,-#_550ab590271d4f07900de501f3324428p2@ENST00000427341
9.37e-99FFCP PHASE2:Hg19::chr6:21383702..21383704,+#_e7cb963e5685dee2d01da2b35df9fb92p@chr6:21383702..21383704, +
9.37e-99FFCP PHASE1:Hg19::chr6:21588091..21588098,-#_e7cb963e5685dee2d01da2b35df9fb92p@chr6:21588091..21588098, -
9.37e-99FFCP PHASE2:Hg19::chr6:21588091..21588098,-#_e7cb963e5685dee2d01da2b35df9fb92p@chr6:21588091..21588098, -
9.37e-99FFCP PHASE2:Hg19::chr21:39627877..39627884,+#_e7cb963e5685dee2d01da2b35df9fb92p@chr21:39627877..39627884, +
9.37e-99FFCP PHASE2:Hg19::chr3:13992334..13992338,-#_e7cb963e5685dee2d01da2b35df9fb92p@chr3:13992334..13992338, -
9.37e-99FFCP PHASE1:Hg19::chr6:21664489..21664494,+#_e7cb963e5685dee2d01da2b35df9fb92p@chr6:21664489..21664494, +
9.37e-99FFCP PHASE1:Hg19::chr6:21666284..21666297,+#_e7cb963e5685dee2d01da2b35df9fb92p26@LINC00340
9.37e-99FFCP PHASE2:Hg19::chr6:21664489..21664494,+#_e7cb963e5685dee2d01da2b35df9fb92p@chr6:21664489..21664494, +
9.37e-99FFCP PHASE1:Hg19::chr21:39627877..39627884,+#_e7cb963e5685dee2d01da2b35df9fb92p@chr21:39627877..39627884, +
9.37e-99FFCP PHASE2:Hg19::chr6:21666284..21666297,+#_e7cb963e5685dee2d01da2b35df9fb92p26@LINC00340
9.37e-99FFCP PHASE1:Hg19::chr6:21383702..21383704,+#_e7cb963e5685dee2d01da2b35df9fb92p@chr6:21383702..21383704, +
9.37e-99FFCP PHASE1:Hg19::chr3:13992334..13992338,-#_e7cb963e5685dee2d01da2b35df9fb92p@chr3:13992334..13992338, -
2.55e-98FFCP PHASE1:Hg19::chr1:233430709..233430711,+#_b0a452fa2c3851593839f7b4ea17b6f8p@chr1:233430709..233430711, +
2.55e-98FFCP PHASE1:Hg19::chr6:21876977..21876981,+#_b0a452fa2c3851593839f7b4ea17b6f8p@chr6:21876977..21876981, +
2.55e-98FFCP PHASE2:Hg19::chr1:233430709..233430711,+#_b0a452fa2c3851593839f7b4ea17b6f8p@chr1:233430709..233430711, +
2.55e-98FFCP PHASE2:Hg19::chr6:21876977..21876981,+#_b0a452fa2c3851593839f7b4ea17b6f8p@chr6:21876977..21876981, +
1.23e-66FFCP PHASE1:Hg19::chr6:21664412..21664419,+#_0ca7866a95a537f16529c36f1e7d55a8p@chr6:21664412..21664419, +
1.23e-66FFCP PHASE2:Hg19::chr6:21664412..21664419,+#_0ca7866a95a537f16529c36f1e7d55a8p@chr6:21664412..21664419, +
1.23e-66FFCP PHASE2:Hg19::chr13:96459990..96459992,+#_0ca7866a95a537f16529c36f1e7d55a8p@chr13:96459990..96459992, +
1.23e-66FFCP PHASE1:Hg19::chr13:96459990..96459992,+#_0ca7866a95a537f16529c36f1e7d55a8p@chr13:96459990..96459992, +
2.39e-66FFCP PHASE1:Hg19::chr15:79296342..79296353,-#_2bde55f8cb6e0bb17eb1f7a7c3f2b2fcp@chr15:79296342..79296353, -
2.39e-66FFCP PHASE2:Hg19::chr11:69867053..69867065,-#_2bde55f8cb6e0bb17eb1f7a7c3f2b2fcp2@ENST00000528507
2.39e-66FFCP PHASE1:Hg19::chr2:176971270..176971277,-#_2bde55f8cb6e0bb17eb1f7a7c3f2b2fcp@chr2:176971270..176971277, -
2.39e-66FFCP PHASE2:Hg19::chr2:176971270..176971277,-#_2bde55f8cb6e0bb17eb1f7a7c3f2b2fcp@chr2:176971270..176971277, -
2.39e-66FFCP PHASE1:Hg19::chr6:20534754..20534756,-#_2bde55f8cb6e0bb17eb1f7a7c3f2b2fcp@chr6:20534754..20534756, -
2.39e-66FFCP PHASE2:Hg19::chr6:20534754..20534756,-#_2bde55f8cb6e0bb17eb1f7a7c3f2b2fcp@chr6:20534754..20534756, -
2.39e-66FFCP PHASE2:Hg19::chr15:79296342..79296353,-#_2bde55f8cb6e0bb17eb1f7a7c3f2b2fcp@chr15:79296342..79296353, -
2.39e-66FFCP PHASE1:Hg19::chr11:69867053..69867065,-#_2bde55f8cb6e0bb17eb1f7a7c3f2b2fcp2@ENST00000528507
4.66e-66FFCP PHASE2:Hg19::chr15:40544787..40544798,+#_55b49d55ec7f6099a972422f1f7ad67bp23@PAK6
4.66e-66FFCP PHASE2:Hg19::chr14:80855894..80855900,+#_55b49d55ec7f6099a972422f1f7ad67bp@chr14:80855894..80855900, +
4.66e-66FFCP PHASE1:Hg19::chr11:92613787..92613796,+#_55b49d55ec7f6099a972422f1f7ad67bp@chr11:92613787..92613796, +
4.66e-66FFCP PHASE2:Hg19::chr11:92613787..92613796,+#_55b49d55ec7f6099a972422f1f7ad67bp@chr11:92613787..92613796, +
4.66e-66FFCP PHASE1:Hg19::chr14:80855894..80855900,+#_55b49d55ec7f6099a972422f1f7ad67bp@chr14:80855894..80855900, +
4.66e-66FFCP PHASE1:Hg19::chr15:40544787..40544798,+#_55b49d55ec7f6099a972422f1f7ad67bp23@PAK6
1.46e-50FFCP PHASE2:Hg19::chr6:21022855..21022892,+#_84861406015c341ae6c6285bf2158202p@chr6:21022855..21022892, +
1.46e-50FFCP PHASE1:Hg19::chr6:21665113..21665128,-#_84861406015c341ae6c6285bf2158202p@chr6:21665113..21665128, -
1.46e-50FFCP PHASE2:Hg19::chr6:21665113..21665128,-#_84861406015c341ae6c6285bf2158202p@chr6:21665113..21665128, -
1.46e-50FFCP PHASE1:Hg19::chr6:21665769..21665780,+#_84861406015c341ae6c6285bf2158202p@chr6:21665769..21665780, +
1.46e-50FFCP PHASE2:Hg19::chr6:21665769..21665780,+#_84861406015c341ae6c6285bf2158202+, p@chr6:21665769..21665780
1.46e-50FFCP PHASE1:Hg19::chr6:21022855..21022892,+#_84861406015c341ae6c6285bf2158202+, p@chr6:21022855..21022892
3.99e-50FFCP PHASE1:Hg19::chr17:4699695..4699699,-#_04cdd6a085834385208c60cd23620bc7p@chr17:4699695..4699699, -
3.99e-50FFCP PHASE2:Hg19::chr17:4699695..4699699,-#_04cdd6a085834385208c60cd23620bc7p@chr17:4699695..4699699, -
9.91e-41FFCP PHASE2:Hg19::chr10:30046722..30046725,-#_4c705256f56884c55e0a9b7741e884eap@chr10:30046722..30046725, -
9.91e-41FFCP PHASE2:Hg19::chr5:57555322..57555334,-#_4c705256f56884c55e0a9b7741e884eap@chr5:57555322..57555334, -
9.91e-41FFCP PHASE1:Hg19::chr5:57555322..57555334,-#_4c705256f56884c55e0a9b7741e884eap@chr5:57555322..57555334, -
9.91e-41FFCP PHASE1:Hg19::chr10:30046722..30046725,-#_4c705256f56884c55e0a9b7741e884eap@chr10:30046722..30046725, -
9.91e-41FFCP PHASE1:Hg19::chr6:22221030..22221034,+#_4c705256f56884c55e0a9b7741e884eap1@AL117559
9.91e-41FFCP PHASE2:Hg19::chr6:22221030..22221034,+#_4c705256f56884c55e0a9b7741e884eap1@AL117559
1.48e-40FFCP PHASE2:Hg19::chr10:30151938..30151956,-#_e84676b204a2b7a71e946865f5fd09bcp@chr10:30151938..30151956, -
1.48e-40FFCP PHASE1:Hg19::chr10:30151938..30151956,-#_e84676b204a2b7a71e946865f5fd09bc-, p@chr10:30151938..30151956
1.48e-40FFCP PHASE1:Hg19::chr17:2264983..2264992,+#_e84676b204a2b7a71e946865f5fd09bcp@chr17:2264983..2264992, +
1.48e-40FFCP PHASE2:Hg19::chr17:2264983..2264992,+#_e84676b204a2b7a71e946865f5fd09bcp@chr17:2264983..2264992, +
3.3e-40FFCP PHASE2:Hg19::chr19:48102065..48102072,+#_6d07c707d0f206d681e92c92816729ffp@chr19:48102065..48102072, +
3.3e-40FFCP PHASE1:Hg19::chr19:48102065..48102072,+#_6d07c707d0f206d681e92c92816729ffp@chr19:48102065..48102072, +
3.3e-40FFCP PHASE1:Hg19::chr15:101417937..101417955,+#_6d07c707d0f206d681e92c92816729ffp8@ALDH1A3
3.3e-40FFCP PHASE2:Hg19::chr15:101417937..101417955,+#_6d07c707d0f206d681e92c92816729ffp8@ALDH1A3
1.84e-34FFCP PHASE1:Hg19::chr6:21680979..21680984,+#_f02a88ca3618d9c0b46415211e34f5eep@chr6:21680979..21680984, +
1.84e-34FFCP PHASE2:Hg19::chr6:21680979..21680984,+#_f02a88ca3618d9c0b46415211e34f5eep@chr6:21680979..21680984, +
2.58e-34FFCP PHASE1:Hg19::chr6:21070033..21070038,+#_61fce50ffdfce4eb359dcec67f94e565p@chr6:21070033..21070038, +
2.58e-34FFCP PHASE2:Hg19::chr6:21070033..21070038,+#_61fce50ffdfce4eb359dcec67f94e565p@chr6:21070033..21070038, +
2.58e-34FFCP PHASE1:Hg19::chr2:177042702..177042725,-#_61fce50ffdfce4eb359dcec67f94e565p2@uc002uku.2
2.58e-34FFCP PHASE2:Hg19::chr4:183752843..183752848,+#_61fce50ffdfce4eb359dcec67f94e565p@chr4:183752843..183752848, +
2.58e-34FFCP PHASE1:Hg19::chr4:183752843..183752848,+#_61fce50ffdfce4eb359dcec67f94e565p@chr4:183752843..183752848, +
2.58e-34FFCP PHASE2:Hg19::chr2:177042702..177042725,-#_61fce50ffdfce4eb359dcec67f94e565p2@uc002uku.2
3.61e-34FFCP PHASE1:Hg19::chr6:22047883..22047886,+#_2ce66a0324e0d727a9175f0ed42c9befp@chr6:22047883..22047886, +
3.61e-34FFCP PHASE2:Hg19::chr6:22047883..22047886,+#_2ce66a0324e0d727a9175f0ed42c9befp@chr6:22047883..22047886, +
5.05e-34FFCP PHASE1:Hg19::chr19:34618510..34618515,-#_9eae911bd94cfd38a9c8ae100bebec35p@chr19:34618510..34618515, -
5.05e-34FFCP PHASE2:Hg19::chr19:34618510..34618515,-#_9eae911bd94cfd38a9c8ae100bebec35p@chr19:34618510..34618515, -
7.48e-30FFCP PHASE2:Hg19::chr6:21665095..21665110,-#_7b7537d0e20371a4c1069b18c1df297ap@chr6:21665095..21665110, -
7.48e-30FFCP PHASE1:Hg19::chr5:54179495..54179507,+#_7b7537d0e20371a4c1069b18c1df297ap@chr5:54179495..54179507, +
7.48e-30FFCP PHASE2:Hg19::chr5:54179495..54179507,+#_7b7537d0e20371a4c1069b18c1df297ap@chr5:54179495..54179507, +
7.48e-30FFCP PHASE1:Hg19::chr1:52629146..52629156,-#_7b7537d0e20371a4c1069b18c1df297ap1@ENST00000412785
7.48e-30FFCP PHASE1:Hg19::chr6:20402608..20402629,+#_7b7537d0e20371a4c1069b18c1df297ap13@E2F3
7.48e-30FFCP PHASE2:Hg19::chr6:20402608..20402629,+#_7b7537d0e20371a4c1069b18c1df297ap13@E2F3
7.48e-30FFCP PHASE2:Hg19::chr1:52629146..52629156,-#_7b7537d0e20371a4c1069b18c1df297ap1@ENST00000412785
7.48e-30FFCP PHASE1:Hg19::chr6:21665095..21665110,-#_7b7537d0e20371a4c1069b18c1df297ap@chr6:21665095..21665110, -
2.37e-29FFCP PHASE2:Hg19::chr6:161454984..161455010,+#_b5c44f6f2b8092fc1903e58701f454dbp14@MAP3K4
2.37e-29FFCP PHASE2:Hg19::chr2:109605543..109605554,-#_b5c44f6f2b8092fc1903e58701f454dbp4@EDAR
2.37e-29FFCP PHASE1:Hg19::chr6:161454984..161455010,+#_b5c44f6f2b8092fc1903e58701f454dbp14@MAP3K4
2.37e-29FFCP PHASE1:Hg19::chr2:109605543..109605554,-#_b5c44f6f2b8092fc1903e58701f454dbp4@EDAR
4.2e-29FFCP PHASE2:Hg19::chrX:104100378..104100381,+#_a116a0556459dd8914667f2fcea18015p@chrX:104100378..104100381, +
4.2e-29FFCP PHASE1:Hg19::chrX:104100378..104100381,+#_a116a0556459dd8914667f2fcea18015p@chrX:104100378..104100381, +
2.78e-26FFCP PHASE2:Hg19::chr13:107029084..107029103,+#_5e2932ea61a24c8301671b9c539752bbp4@LINC00460
2.78e-26FFCP PHASE1:Hg19::chr6:21933119..21933123,+#_5e2932ea61a24c8301671b9c539752bbp@chr6:21933119..21933123, +
2.78e-26FFCP PHASE2:Hg19::chr6:21933119..21933123,+#_5e2932ea61a24c8301671b9c539752bbp@chr6:21933119..21933123, +
2.78e-26FFCP PHASE1:Hg19::chr13:107029084..107029103,+#_5e2932ea61a24c8301671b9c539752bbp4@LINC00460
3.58e-26FFCP PHASE2:Hg19::chr3:104180688..104180692,+#_1f15f221ac2117ffb298d285eeef22efp@chr3:104180688..104180692, +
3.58e-26FFCP PHASE1:Hg19::chr3:104180688..104180692,+#_1f15f221ac2117ffb298d285eeef22efp@chr3:104180688..104180692, +
4.61e-26FFCP PHASE1:Hg19::chr7:121156367..121156370,-#_72c8f28fc0f9773b81936611ffcae78ep@chr7:121156367..121156370, -
4.61e-26FFCP PHASE1:Hg19::chr1:12239065..12239070,-#_72c8f28fc0f9773b81936611ffcae78ep@chr1:12239065..12239070, -
4.61e-26FFCP PHASE2:Hg19::chr7:121156367..121156370,-#_72c8f28fc0f9773b81936611ffcae78ep@chr7:121156367..121156370, -
4.61e-26FFCP PHASE2:Hg19::chr1:12239065..12239070,-#_72c8f28fc0f9773b81936611ffcae78ep@chr1:12239065..12239070, -
4.61e-26FFCP PHASE1:Hg19::chr9:93960724..93960730,+#_72c8f28fc0f9773b81936611ffcae78ep@chr9:93960724..93960730, +
4.61e-26FFCP PHASE1:Hg19::chr15:101418003..101418019,+#_72c8f28fc0f9773b81936611ffcae78ep5@ALDH1A3
4.61e-26FFCP PHASE2:Hg19::chr9:93960724..93960730,+#_72c8f28fc0f9773b81936611ffcae78ep@chr9:93960724..93960730, +
4.61e-26FFCP PHASE2:Hg19::chr15:101418003..101418019,+#_72c8f28fc0f9773b81936611ffcae78ep5@ALDH1A3