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Coexpression cluster:C1082


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Full id: C1082_acute_CD4_thymus_small_non_chronic_lymphangiectasia

Phase1 CAGE Peaks

  Short description
Hg19::chr4:108971419..108971431,- p@chr4:108971419..108971431
Hg19::chr4:108978060..108978063,- p@chr4:108978060..108978063
Hg19::chr4:109010390..109010401,- p@chr4:109010390..109010401
Hg19::chr4:109089901..109089930,- p3@LEF1
Hg19::chr4:109089966..109089977,- p15@LEF1
Hg19::chr4:109089996..109090012,- p5@LEF1
Hg19::chr4:109090026..109090031,- p20@LEF1
Hg19::chr4:109090106..109090124,- p10@LEF1

Enriched pathways on this co-expression clusterSummary:
Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.
Analyst: Emmanuel Dimont

link to source dataset

No results for this coexpression

Enriched Gene Ontology terms on this co-expression clusterSummary: Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter.
Analyst: Erik Arner

link to source dataset

No GOStat results

Enriched sample ontology terms on this co-expression clusterSummary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji

links to source dataset


Uber Anatomy
Ontology termp-valuen
adult organism4.83e-20115
neural tube2.15e-1257
neural rod2.15e-1257
future spinal cord2.15e-1257
neural keel2.15e-1257
central nervous system3.14e-1082
haemolymphatic fluid3.71e-1015
organism substance3.71e-1015
future brain4.23e-1069
regional part of brain4.82e-1059
anterior neural tube9.51e-1042
regional part of forebrain1.98e-0941
future forebrain1.98e-0941
regional part of nervous system1.61e-0894
nervous system1.61e-0894
gray matter3.61e-0834
brain grey matter3.61e-0834
regional part of telencephalon4.51e-0833
cerebral hemisphere7.88e-0832
anterior region of body8.13e-08129
craniocervical region8.13e-08129
neural plate2.68e-0786
presumptive neural plate2.68e-0786
regional part of cerebral cortex9.65e-0722

Overrepresented TFBS (DNA) motifs on this co-expression clusterSummary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon

link to source data
Novel motifs

Jaspar motifs

Novel motifs

JASPAR motifs



ENCODE TF ChIP-seq peak enrichment analysisSummary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained.
Analyst: Erik Arner

link to source dataset


No analysis results for this cluster

Relative expression of the co-expression clusterSummary:Co-expression clusters are compared against FANTOM5 samples to obtain relative expression.

link to data source

This analysis result is provided for C0 - C305 clusters.