Personal tools

Coexpression cluster:C115

From FANTOM5_SSTAR

Revision as of 16:29, 18 May 2012 by Autoedit (talk | contribs) (Created page with "{{Coexpression_clusters |full_id=C115_pituitary_Neural_caudate_putamen_amygdala_medulla_hippocampus |id=C115 }}")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search


Full id: C115_pituitary_Neural_caudate_putamen_amygdala_medulla_hippocampus



Phase1 CAGE Peaks

Hg19::chr10:106423509..106423521,+p@chr10:106423509..106423521
+
Hg19::chr10:123959529..123959547,+p@chr10:123959529..123959547
+
Hg19::chr10:18579999..18580012,-p@chr10:18579999..18580012
-
Hg19::chr10:18580030..18580043,-p@chr10:18580030..18580043
-
Hg19::chr10:18580125..18580134,+p@chr10:18580125..18580134
+
Hg19::chr10:18580138..18580153,+p@chr10:18580138..18580153
+
Hg19::chr11:111601666..111601697,-p@chr11:111601666..111601697
-
Hg19::chr11:68419276..68419303,-p@chr11:68419276..68419303
-
Hg19::chr11:9088284..9088330,-p4@SCUBE2
Hg19::chr12:113697781..113697814,+p7@TPCN1
Hg19::chr12:80603044..80603046,+p1@OTOGL
Hg19::chr12:89881337..89881342,-p@chr12:89881337..89881342
-
Hg19::chr12:89881348..89881356,-p@chr12:89881348..89881356
-
Hg19::chr13:40924577..40924587,-p2@ENST00000400432
Hg19::chr13:40924605..40924623,-p1@ENST00000400432
Hg19::chr13:51617751..51617754,+p@chr13:51617751..51617754
+
Hg19::chr14:62584108..62584133,+p1@FLJ43390
Hg19::chr14:62584173..62584178,+p2@ENST00000334389
Hg19::chr15:24157554..24157578,+p@chr15:24157554..24157578
+
Hg19::chr15:33445488..33445523,-p@chr15:33445488..33445523
-
Hg19::chr15:33445536..33445552,-p@chr15:33445536..33445552
-
Hg19::chr15:48681810..48681835,-p@chr15:48681810..48681835
-
Hg19::chr15:62352961..62352973,-p8@VPS13C
Hg19::chr15:89147906..89147920,+p@chr15:89147906..89147920
+
Hg19::chr16:21049173..21049231,-p@chr16:21049173..21049231
-
Hg19::chr17:18021982..18021985,+p3@MYO15A
Hg19::chr17:191188..191219,-p@chr17:191188..191219
-
Hg19::chr17:191225..191238,-p@chr17:191225..191238
-
Hg19::chr17:61995906..61995914,-p6@AB591020
Hg19::chr17:61995979..61995990,-p2@AB591020
Hg19::chr17:61995995..61996002,-p3@AB591020
Hg19::chr17:61996018..61996019,-p5@AB591020
Hg19::chr17:61996155..61996158,-p5@GH1
Hg19::chr17:61996160..61996176,-p3@GH1
Hg19::chr17:61996252..61996253,-p2@GH1
p3@CSHL1
Hg19::chr17:61996393..61996421,-p4@CSHL1
p4@GH1
Hg19::chr18:21824830..21824832,-p@chr18:21824830..21824832
-
Hg19::chr19:14095105..14095108,-p@chr19:14095105..14095108
-
Hg19::chr19:14946017..14946050,-p3@OR7A5
Hg19::chr19:2608406..2608413,-p@chr19:2608406..2608413
-
Hg19::chr19:46801484..46801498,+p9@HIF3A
Hg19::chr19:4770772..4770775,+p1@MIR7-3
Hg19::chr19:47793168..47793181,+p@chr19:47793168..47793181
+
Hg19::chr1:109656644..109656670,+p4@KIAA1324
Hg19::chr1:114483276..114483289,+p@chr1:114483276..114483289
+
Hg19::chr1:159116850..159116858,-p10@AIM2
Hg19::chr1:159116897..159116903,-p12@AIM2
Hg19::chr1:168250110..168250120,+p2@TBX19
Hg19::chr1:168250194..168250197,+p3@TBX19
Hg19::chr1:206942410..206942414,-p@chr1:206942410..206942414
-
Hg19::chr1:240286421..240286436,+p@chr1:240286421..240286436
+
Hg19::chr1:43400328..43400332,+p@chr1:43400328..43400332
+
Hg19::chr1:7709325..7709329,+p@chr1:7709325..7709329
+
Hg19::chr20:20505922..20505946,-p@chr20:20505922..20505946
-
Hg19::chr20:31667446..31667451,+p1@BPIFB4
Hg19::chr20:33451327..33451358,-p4@GGT7
Hg19::chr20:57415768..57415803,+p@chr20:57415768..57415803
+
Hg19::chr20:58401707..58401714,+p@chr20:58401707..58401714
+
Hg19::chr20:58401898..58401905,+p@chr20:58401898..58401905
+
Hg19::chr22:45015998..45016005,-p@chr22:45015998..45016005
-
Hg19::chr2:130941446..130941486,-p1@CU676019
Hg19::chr2:1714065..1714071,+p@chr2:1714065..1714071
+
Hg19::chr2:187287127..187287143,-p@chr2:187287127..187287143
-
Hg19::chr2:211830430..211830435,+p@chr2:211830430..211830435
+
Hg19::chr2:211830446..211830457,+p@chr2:211830446..211830457
+
Hg19::chr2:241080084..241080093,-p5@OTOS
Hg19::chr2:25383828..25383855,-p4@POMC
Hg19::chr2:25383910..25383918,-p17@POMC
Hg19::chr2:25383947..25383959,+p@chr2:25383947..25383959
+
Hg19::chr2:25391399..25391417,-p8@POMC
Hg19::chr2:25391425..25391439,-p10@POMC
Hg19::chr2:25391442..25391456,-p1@POMC
Hg19::chr2:25391468..25391485,-p5@POMC
Hg19::chr2:25391507..25391519,-p9@POMC
Hg19::chr2:25391657..25391666,-p14@POMC
Hg19::chr2:25391815..25391821,-p13@POMC
Hg19::chr2:45161466..45161475,+p@chr2:45161466..45161475
+
Hg19::chr2:58113353..58113375,-p@chr2:58113353..58113375
-
Hg19::chr2:58113386..58113399,-p@chr2:58113386..58113399
-
Hg19::chr2:58113402..58113415,-p@chr2:58113402..58113415
-
Hg19::chr2:58113422..58113431,-p@chr2:58113422..58113431
-
Hg19::chr2:70312872..70312889,-p23@PCBP1-AS1
Hg19::chr2:70312899..70312908,-p44@PCBP1-AS1
Hg19::chr2:7497646..7497649,+p@chr2:7497646..7497649
+
Hg19::chr2:98962912..98962924,+p2@CNGA3
Hg19::chr3:108321623..108321685,+p4@DZIP3
Hg19::chr3:114477881..114477914,-p17@ZBTB20
Hg19::chr3:118521917..118521922,-p@chr3:118521917..118521922
-
Hg19::chr3:130248877..130248886,+p@chr3:130248877..130248886
+
Hg19::chr3:130248915..130248922,+p@chr3:130248915..130248922
+
Hg19::chr3:130248948..130248959,+p@chr3:130248948..130248959
+
Hg19::chr3:133115455..133115457,+p@chr3:133115455..133115457
+
Hg19::chr3:154042775..154042780,-p8@DHX36
Hg19::chr3:185324217..185324224,+p1@ENST00000455173
Hg19::chr3:24206603..24206613,-p17@THRB
Hg19::chr3:24206934..24206942,-p24@THRB
Hg19::chr3:4774755..4774765,+p@chr3:4774755..4774765
+
Hg19::chr3:58572679..58572682,-p30@FAM107A
Hg19::chr3:58572689..58572703,-p6@FAM107A
Hg19::chr3:58572720..58572733,-p11@FAM107A
Hg19::chr3:58572734..58572746,-p8@FAM107A
Hg19::chr3:58572760..58572774,-p9@FAM107A
Hg19::chr3:79817089..79817094,-p27@ROBO1
Hg19::chr3:87325636..87325643,-p2@POU1F1
Hg19::chr3:87325728..87325739,-p1@POU1F1
Hg19::chr4:108815402..108815408,+p13@SGMS2
Hg19::chr4:1352813..1352818,-p@chr4:1352813..1352818
-
Hg19::chr4:6635531..6635534,+p@chr4:6635531..6635534
+
Hg19::chr4:70518941..70518967,-p1@UGT2A1
p1@UGT2A2
Hg19::chr4:76359403..76359419,-p1@ENST00000510744
Hg19::chr4:8103287..8103292,+p@chr4:8103287..8103292
+
Hg19::chr5:132668491..132668494,+p@chr5:132668491..132668494
+
Hg19::chr5:134509776..134509792,+p@chr5:134509776..134509792
+
Hg19::chr5:134509799..134509814,+p@chr5:134509799..134509814
+
Hg19::chr5:158737729..158737738,-p@chr5:158737729..158737738
-
Hg19::chr5:158737824..158737862,+p1@ENST00000521472
Hg19::chr5:165553564..165553568,-p@chr5:165553564..165553568
-
Hg19::chr5:77409743..77409752,-p6@AP3B1
Hg19::chr6:12717892..12717903,+p23@PHACTR1
Hg19::chr6:139155017..139155049,-p@chr6:139155017..139155049
-
Hg19::chr6:163149056..163149101,+p2@PACRG
Hg19::chr6:168333280..168333294,+p9@MLLT4
Hg19::chr6:22287516..22287522,-p@chr6:22287516..22287522
-
Hg19::chr6:22287527..22287538,-p@chr6:22287527..22287538
-
Hg19::chr6:22287619..22287636,-p@chr6:22287619..22287636
-
Hg19::chr6:22287669..22287676,-p@chr6:22287669..22287676
-
Hg19::chr6:22287695..22287700,-p@chr6:22287695..22287700
-
Hg19::chr6:22297257..22297272,-p1@PRL
Hg19::chr6:82727317..82727327,+p@chr6:82727317..82727327
+
Hg19::chr6:88805080..88805083,-p@chr6:88805080..88805083
-
Hg19::chr7:103549700..103549706,-p@chr7:103549700..103549706
-
Hg19::chr7:150644605..150644616,-p@chr7:150644605..150644616
-
Hg19::chr7:31003560..31003576,+p5@GHRHR
Hg19::chr7:31003580..31003589,+p6@GHRHR
Hg19::chr7:31006649..31006651,+p@chr7:31006649..31006651
+
Hg19::chr7:31009189..31009197,+p11@GHRHR
Hg19::chr7:31010569..31010576,+p9@GHRHR
Hg19::chr7:31010582..31010601,+p4@GHRHR
Hg19::chr7:31016265..31016282,+p@chr7:31016265..31016282
+
Hg19::chr7:95114742..95114776,+p4@ASB4
Hg19::chr8:1066886..1066919,+p@chr8:1066886..1066919
+
Hg19::chr8:107844170..107844179,+p@chr8:107844170..107844179
+
Hg19::chr8:130017368..130017390,+p@chr8:130017368..130017390
+
Hg19::chr9:135964996..135965001,+p@chr9:135964996..135965001
+
Hg19::chr9:135965121..135965124,+p@chr9:135965121..135965124
+
Hg19::chr9:547212..547233,+p28@KANK1
Hg19::chr9:75568126..75568136,-p13@ALDH1A1
Hg19::chr9:75568163..75568197,-p8@ALDH1A1
Hg19::chrX:111923145..111923173,-p1@LHFPL1
Hg19::chrX:130215591..130215605,+p@chrX:130215591..130215605
+
Hg19::chrX:130215610..130215625,+p@chrX:130215610..130215625
+
Hg19::chrX:130215640..130215656,+p@chrX:130215640..130215656
+
Hg19::chrX:130423240..130423288,-p1@IGSF1
Hg19::chrX:130423386..130423397,-p6@IGSF1
Hg19::chrX:147887590..147887594,+p@chrX:147887590..147887594
+
Hg19::chrX:150345054..150345060,+p1@GPR50
Hg19::chrX:24169518..24169522,+p8@ZFX
Hg19::chrX:38147077..38147085,-p@chrX:38147077..38147085
-
Hg19::chrX:38183144..38183165,-p@chrX:38183144..38183165
-
Hg19::chrX:9528518..9528536,+p@chrX:9528518..9528536
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C115&oldid=1700273"