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Difference between revisions of "Coexpression cluster:C152"

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{{Coexpression_clusters
 
{{Coexpression_clusters
 +
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267242073812037,0.0734556834376374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15998452593304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
 
|full_id=C152_peripheral_neuroectodermal_neuroepithelioma_neuroblastoma_testicular_carcinoid_lung
 
|full_id=C152_peripheral_neuroectodermal_neuroepithelioma_neuroblastoma_testicular_carcinoid_lung
 
|gostat_on_coexpression_clusters=GO:0048518!positive regulation of biological process!0.00883372854427476!23090;10499;355;6910;973;7857$GO:0048523!negative regulation of cellular process!0.00883372854427476!23090;10499;355;6910;7857;2668$GO:0048519!negative regulation of biological process!0.00883372854427476!23090;10499;355;6910;7857;2668$GO:0007154!cell communication!0.0108053691275168!5737;10499;6910;4842;973;2662;355;9882;7857;2668;5565$GO:0048522!positive regulation of cellular process!0.0108053691275168!23090;10499;355;6910;7857$GO:0007275!multicellular organismal development!0.0108053691275168!23090;754;6910;973;7857;2668;2662$GO:0048731!system development!0.0108053691275168!23090;6910;973;7857;2668;2662$GO:0043066!negative regulation of apoptosis!0.0108053691275168!355;7857;2668$GO:0043069!negative regulation of programmed cell death!0.0108053691275168!355;7857;2668$GO:0042981!regulation of apoptosis!0.0108053691275168!355;6910;7857;2668$GO:0016477!cell migration!0.0108053691275168!6910;7857;2668$GO:0043067!regulation of programmed cell death!0.0108053691275168!355;6910;7857;2668$GO:0032502!developmental process!0.0108053691275168!23090;754;355;6910;973;7857;2668;2662$GO:0048869!cellular developmental process!0.0108053691275168!23090;355;6910;973;7857;2668$GO:0030154!cell differentiation!0.0108053691275168!23090;355;6910;973;7857;2668$GO:0045145!single-stranded DNA specific 5'-3' exodeoxyribonuclease activity!0.0108053691275168!9156$GO:0051580!regulation of neurotransmitter uptake!0.0108053691275168!2668$GO:0031588!AMP-activated protein kinase complex!0.0108053691275168!5565$GO:0051940!regulation of catecholamine uptake during transmission of nerve impulse!0.0108053691275168!2668$GO:0060044!negative regulation of cardiac muscle cell proliferation!0.0108053691275168!6910$GO:0051584!regulation of dopamine uptake!0.0108053691275168!2668$GO:0060039!pericardium development!0.0108053691275168!6910$GO:0051588!regulation of neurotransmitter transport!0.0108053691275168!2668$GO:0048245!eosinophil chemotaxis!0.0108053691275168!7857$GO:0051908!double-stranded DNA specific 5'-3' exodeoxyribonuclease activity!0.0108053691275168!9156$GO:0045941!positive regulation of transcription!0.0109783992484107!23090;10499;6910$GO:0045935!positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process!0.0117075890696853!23090;10499;6910$GO:0048856!anatomical structure development!0.0142134057431183!23090;6910;973;7857;2668;2662$GO:0048256!flap endonuclease activity!0.0142134057431183!9156$GO:0051890!regulation of cardioblast differentiation!0.0142134057431183!6910$GO:0008297!single-stranded DNA specific exodeoxyribonuclease activity!0.0142134057431183!9156$GO:0051891!positive regulation of cardioblast differentiation!0.0142134057431183!6910$GO:0051934!catecholamine uptake during transmission of nerve impulse!0.0142134057431183!2668$GO:0035312!5'-3' exodeoxyribonuclease activity!0.0142134057431183!9156$GO:0051583!dopamine uptake!0.0142134057431183!2668$GO:0008309!double-stranded DNA specific exodeoxyribonuclease activity!0.0142134057431183!9156$GO:0060043!regulation of cardiac muscle cell proliferation!0.0142134057431183!6910$GO:0051937!catecholamine transport!0.0142134057431183!2668$GO:0032501!multicellular organismal process!0.0150050967142505!23090;754;6910;4842;973;7857;2668;2662$GO:0031325!positive regulation of cellular metabolic process!0.0154808719383287!23090;10499;6910$GO:0006928!cell motility!0.0161985131820893!6910;7857;2668$GO:0051674!localization of cell!0.0161985131820893!6910;7857;2668$GO:0006915!apoptosis!0.0161985131820893!355;6910;7857;2668$GO:0009893!positive regulation of metabolic process!0.0161985131820893!23090;10499;6910$GO:0012501!programmed cell death!0.0161985131820893!355;6910;7857;2668$GO:0050789!regulation of biological process!0.0161985131820893!23090;10499;6656;5275;6910;973;355;2668;7857;9882$GO:0019814!immunoglobulin complex!0.0161985131820893!973$GO:0035117!embryonic arm morphogenesis!0.0161985131820893!6910$GO:0035140!arm morphogenesis!0.0161985131820893!6910$GO:0019815!B cell receptor complex!0.0161985131820893!973$GO:0016265!death!0.0176861445070775!355;6910;7857;2668$GO:0008219!cell death!0.0176861445070775!355;6910;7857;2668$GO:0007165!signal transduction!0.0176861445070775!5737;10499;973;2662;355;9882;2668;5565;7857$GO:0010002!cardioblast differentiation!0.0186135006843351!6910$GO:0004958!prostaglandin F receptor activity!0.0186135006843351!5737$GO:0015872!dopamine transport!0.0186135006843351!2668$GO:0005771!multivesicular body!0.0186135006843351!973$GO:0008409!5'-3' exonuclease activity!0.0186135006843351!9156$GO:0035136!forelimb morphogenesis!0.0224846941476318!6910$GO:0035115!embryonic forelimb morphogenesis!0.0224846941476318!6910$GO:0005515!protein binding!0.0239348000934181!10499;91694;6910;4842;973;2662;9156;125336;355;7857;5565;2668$GO:0005102!receptor binding!0.0240458941701157!10499;7857;2668;2662$GO:0001938!positive regulation of endothelial cell proliferation!0.0248987934679273!7857$GO:0060038!cardiac muscle cell proliferation!0.0248987934679273!6910$GO:0014855!striated muscle cell proliferation!0.0248987934679273!6910$GO:0065007!biological regulation!0.0250294907536934!23090;10499;6656;5275;6910;973;355;2668;7857;9882$GO:0004517!nitric-oxide synthase activity!0.0273565638859108!4842$GO:0001963!synaptic transmission, dopaminergic!0.0273565638859108!2668$GO:0030375!thyroid hormone receptor coactivator activity!0.0273565638859108!10499$GO:0048513!organ development!0.0280081264378309!6910;973;7857;2662$GO:0006916!anti-apoptosis!0.0280081264378309!355;2668$GO:0001504!neurotransmitter uptake!0.0280081264378309!2668$GO:0035051!cardiac cell differentiation!0.0280081264378309!6910$GO:0004529!exodeoxyribonuclease activity!0.0280081264378309!9156$GO:0016895!exodeoxyribonuclease activity, producing 5'-phosphomonoesters!0.0280081264378309!9156$GO:0007567!parturition!0.0280081264378309!5737$GO:0050930!induction of positive chemotaxis!0.0280081264378309!7857$GO:0006510!ATP-dependent proteolysis!0.0310960275236025!91694$GO:0050926!regulation of positive chemotaxis!0.0324601955437952!7857$GO:0001755!neural crest cell migration!0.0324601955437952!2668$GO:0004960!thromboxane receptor activity!0.0324601955437952!5737$GO:0050927!positive regulation of positive chemotaxis!0.0324601955437952!7857$GO:0050918!positive chemotaxis!0.0324601955437952!7857$GO:0048468!cell development!0.0336533321008129!355;6910;7857;2668$GO:0050853!B cell receptor signaling pathway!0.0340545295881786!973$GO:0043524!negative regulation of neuron apoptosis!0.0340545295881786!2668$GO:0050921!positive regulation of chemotaxis!0.0340545295881786!7857$GO:0007267!cell-cell signaling!0.0341347283659012!6910;4842;2668$GO:0050920!regulation of chemotaxis!0.0355069644778001!7857$GO:0001937!negative regulation of endothelial cell proliferation!0.0355069644778001!7857$GO:0043542!endothelial cell migration!0.0355069644778001!7857$GO:0006917!induction of apoptosis!0.0356361027681849!355;6910$GO:0012502!induction of programmed cell death!0.0356361027681849!355;6910$GO:0016564!transcription repressor activity!0.0356361027681849!23090;10499$GO:0045893!positive regulation of transcription, DNA-dependent!0.0380549399575205!10499;6910$GO:0008285!negative regulation of cell proliferation!0.0380549399575205!6910;7857$GO:0014032!neural crest cell development!0.0380549399575205!2668$GO:0014033!neural crest cell differentiation!0.0380549399575205!2668$GO:0004176!ATP-dependent peptidase activity!0.0380549399575205!91694$GO:0002376!immune system process!0.0413852875303107!355;973;7857;9156$GO:0008283!cell proliferation!0.0439491641186795!6910;973;7857$GO:0030162!regulation of proteolysis!0.0439491641186795!5275$GO:0001936!regulation of endothelial cell proliferation!0.0439491641186795!7857$GO:0001772!immunological synapse!0.0439491641186795!973$GO:0008083!growth factor activity!0.0439821776891054!2668;2662$GO:0043065!positive regulation of apoptosis!0.0445591050977236!355;6910$GO:0043068!positive regulation of programmed cell death!0.0447977380904846!355;6910$GO:0042100!B cell proliferation!0.0447977380904846!973$GO:0007270!nerve-nerve synaptic transmission!0.0459949624042042!2668$GO:0001935!endothelial cell proliferation!0.0459949624042042!7857$GO:0030336!negative regulation of cell migration!0.0459949624042042!6910$GO:0033002!muscle cell proliferation!0.0479693615694716!6910
 
|gostat_on_coexpression_clusters=GO:0048518!positive regulation of biological process!0.00883372854427476!23090;10499;355;6910;973;7857$GO:0048523!negative regulation of cellular process!0.00883372854427476!23090;10499;355;6910;7857;2668$GO:0048519!negative regulation of biological process!0.00883372854427476!23090;10499;355;6910;7857;2668$GO:0007154!cell communication!0.0108053691275168!5737;10499;6910;4842;973;2662;355;9882;7857;2668;5565$GO:0048522!positive regulation of cellular process!0.0108053691275168!23090;10499;355;6910;7857$GO:0007275!multicellular organismal development!0.0108053691275168!23090;754;6910;973;7857;2668;2662$GO:0048731!system development!0.0108053691275168!23090;6910;973;7857;2668;2662$GO:0043066!negative regulation of apoptosis!0.0108053691275168!355;7857;2668$GO:0043069!negative regulation of programmed cell death!0.0108053691275168!355;7857;2668$GO:0042981!regulation of apoptosis!0.0108053691275168!355;6910;7857;2668$GO:0016477!cell migration!0.0108053691275168!6910;7857;2668$GO:0043067!regulation of programmed cell death!0.0108053691275168!355;6910;7857;2668$GO:0032502!developmental process!0.0108053691275168!23090;754;355;6910;973;7857;2668;2662$GO:0048869!cellular developmental process!0.0108053691275168!23090;355;6910;973;7857;2668$GO:0030154!cell differentiation!0.0108053691275168!23090;355;6910;973;7857;2668$GO:0045145!single-stranded DNA specific 5'-3' exodeoxyribonuclease activity!0.0108053691275168!9156$GO:0051580!regulation of neurotransmitter uptake!0.0108053691275168!2668$GO:0031588!AMP-activated protein kinase complex!0.0108053691275168!5565$GO:0051940!regulation of catecholamine uptake during transmission of nerve impulse!0.0108053691275168!2668$GO:0060044!negative regulation of cardiac muscle cell proliferation!0.0108053691275168!6910$GO:0051584!regulation of dopamine uptake!0.0108053691275168!2668$GO:0060039!pericardium development!0.0108053691275168!6910$GO:0051588!regulation of neurotransmitter transport!0.0108053691275168!2668$GO:0048245!eosinophil chemotaxis!0.0108053691275168!7857$GO:0051908!double-stranded DNA specific 5'-3' exodeoxyribonuclease activity!0.0108053691275168!9156$GO:0045941!positive regulation of transcription!0.0109783992484107!23090;10499;6910$GO:0045935!positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process!0.0117075890696853!23090;10499;6910$GO:0048856!anatomical structure development!0.0142134057431183!23090;6910;973;7857;2668;2662$GO:0048256!flap endonuclease activity!0.0142134057431183!9156$GO:0051890!regulation of cardioblast differentiation!0.0142134057431183!6910$GO:0008297!single-stranded DNA specific exodeoxyribonuclease activity!0.0142134057431183!9156$GO:0051891!positive regulation of cardioblast differentiation!0.0142134057431183!6910$GO:0051934!catecholamine uptake during transmission of nerve impulse!0.0142134057431183!2668$GO:0035312!5'-3' exodeoxyribonuclease activity!0.0142134057431183!9156$GO:0051583!dopamine uptake!0.0142134057431183!2668$GO:0008309!double-stranded DNA specific exodeoxyribonuclease activity!0.0142134057431183!9156$GO:0060043!regulation of cardiac muscle cell proliferation!0.0142134057431183!6910$GO:0051937!catecholamine transport!0.0142134057431183!2668$GO:0032501!multicellular organismal process!0.0150050967142505!23090;754;6910;4842;973;7857;2668;2662$GO:0031325!positive regulation of cellular metabolic process!0.0154808719383287!23090;10499;6910$GO:0006928!cell motility!0.0161985131820893!6910;7857;2668$GO:0051674!localization of cell!0.0161985131820893!6910;7857;2668$GO:0006915!apoptosis!0.0161985131820893!355;6910;7857;2668$GO:0009893!positive regulation of metabolic process!0.0161985131820893!23090;10499;6910$GO:0012501!programmed cell death!0.0161985131820893!355;6910;7857;2668$GO:0050789!regulation of biological process!0.0161985131820893!23090;10499;6656;5275;6910;973;355;2668;7857;9882$GO:0019814!immunoglobulin complex!0.0161985131820893!973$GO:0035117!embryonic arm morphogenesis!0.0161985131820893!6910$GO:0035140!arm morphogenesis!0.0161985131820893!6910$GO:0019815!B cell receptor complex!0.0161985131820893!973$GO:0016265!death!0.0176861445070775!355;6910;7857;2668$GO:0008219!cell death!0.0176861445070775!355;6910;7857;2668$GO:0007165!signal transduction!0.0176861445070775!5737;10499;973;2662;355;9882;2668;5565;7857$GO:0010002!cardioblast differentiation!0.0186135006843351!6910$GO:0004958!prostaglandin F receptor activity!0.0186135006843351!5737$GO:0015872!dopamine transport!0.0186135006843351!2668$GO:0005771!multivesicular body!0.0186135006843351!973$GO:0008409!5'-3' exonuclease activity!0.0186135006843351!9156$GO:0035136!forelimb morphogenesis!0.0224846941476318!6910$GO:0035115!embryonic forelimb morphogenesis!0.0224846941476318!6910$GO:0005515!protein binding!0.0239348000934181!10499;91694;6910;4842;973;2662;9156;125336;355;7857;5565;2668$GO:0005102!receptor binding!0.0240458941701157!10499;7857;2668;2662$GO:0001938!positive regulation of endothelial cell proliferation!0.0248987934679273!7857$GO:0060038!cardiac muscle cell proliferation!0.0248987934679273!6910$GO:0014855!striated muscle cell proliferation!0.0248987934679273!6910$GO:0065007!biological regulation!0.0250294907536934!23090;10499;6656;5275;6910;973;355;2668;7857;9882$GO:0004517!nitric-oxide synthase activity!0.0273565638859108!4842$GO:0001963!synaptic transmission, dopaminergic!0.0273565638859108!2668$GO:0030375!thyroid hormone receptor coactivator activity!0.0273565638859108!10499$GO:0048513!organ development!0.0280081264378309!6910;973;7857;2662$GO:0006916!anti-apoptosis!0.0280081264378309!355;2668$GO:0001504!neurotransmitter uptake!0.0280081264378309!2668$GO:0035051!cardiac cell differentiation!0.0280081264378309!6910$GO:0004529!exodeoxyribonuclease activity!0.0280081264378309!9156$GO:0016895!exodeoxyribonuclease activity, producing 5'-phosphomonoesters!0.0280081264378309!9156$GO:0007567!parturition!0.0280081264378309!5737$GO:0050930!induction of positive chemotaxis!0.0280081264378309!7857$GO:0006510!ATP-dependent proteolysis!0.0310960275236025!91694$GO:0050926!regulation of positive chemotaxis!0.0324601955437952!7857$GO:0001755!neural crest cell migration!0.0324601955437952!2668$GO:0004960!thromboxane receptor activity!0.0324601955437952!5737$GO:0050927!positive regulation of positive chemotaxis!0.0324601955437952!7857$GO:0050918!positive chemotaxis!0.0324601955437952!7857$GO:0048468!cell development!0.0336533321008129!355;6910;7857;2668$GO:0050853!B cell receptor signaling pathway!0.0340545295881786!973$GO:0043524!negative regulation of neuron apoptosis!0.0340545295881786!2668$GO:0050921!positive regulation of chemotaxis!0.0340545295881786!7857$GO:0007267!cell-cell signaling!0.0341347283659012!6910;4842;2668$GO:0050920!regulation of chemotaxis!0.0355069644778001!7857$GO:0001937!negative regulation of endothelial cell proliferation!0.0355069644778001!7857$GO:0043542!endothelial cell migration!0.0355069644778001!7857$GO:0006917!induction of apoptosis!0.0356361027681849!355;6910$GO:0012502!induction of programmed cell death!0.0356361027681849!355;6910$GO:0016564!transcription repressor activity!0.0356361027681849!23090;10499$GO:0045893!positive regulation of transcription, DNA-dependent!0.0380549399575205!10499;6910$GO:0008285!negative regulation of cell proliferation!0.0380549399575205!6910;7857$GO:0014032!neural crest cell development!0.0380549399575205!2668$GO:0014033!neural crest cell differentiation!0.0380549399575205!2668$GO:0004176!ATP-dependent peptidase activity!0.0380549399575205!91694$GO:0002376!immune system process!0.0413852875303107!355;973;7857;9156$GO:0008283!cell proliferation!0.0439491641186795!6910;973;7857$GO:0030162!regulation of proteolysis!0.0439491641186795!5275$GO:0001936!regulation of endothelial cell proliferation!0.0439491641186795!7857$GO:0001772!immunological synapse!0.0439491641186795!973$GO:0008083!growth factor activity!0.0439821776891054!2668;2662$GO:0043065!positive regulation of apoptosis!0.0445591050977236!355;6910$GO:0043068!positive regulation of programmed cell death!0.0447977380904846!355;6910$GO:0042100!B cell proliferation!0.0447977380904846!973$GO:0007270!nerve-nerve synaptic transmission!0.0459949624042042!2668$GO:0001935!endothelial cell proliferation!0.0459949624042042!7857$GO:0030336!negative regulation of cell migration!0.0459949624042042!6910$GO:0033002!muscle cell proliferation!0.0479693615694716!6910

Revision as of 05:06, 12 September 2012


Full id: C152_peripheral_neuroectodermal_neuroepithelioma_neuroblastoma_testicular_carcinoid_lung



Phase1 CAGE Peaks

  Short description
Hg19::chr10:108310875..108310884,- p@chr10:108310875..108310884
-
Hg19::chr10:118927879..118927891,+ +
p@chr10:118927879..118927891
Hg19::chr10:134906467..134906473,+ p@chr10:134906467..134906473
+
Hg19::chr10:48439100..48439189,- p1@GDF10
Hg19::chr10:48439197..48439208,- p3@GDF10
Hg19::chr10:48439285..48439302,- p4@GDF10
Hg19::chr10:6261377..6261401,+ p@chr10:6261377..6261401
+
Hg19::chr10:6261416..6261419,+ p@chr10:6261416..6261419
+
Hg19::chr10:78646980..78646993,+ p@chr10:78646980..78646993
+
Hg19::chr10:78647047..78647056,+ p@chr10:78647047..78647056
+
Hg19::chr10:90749902..90749913,+ p14@FAS
Hg19::chr10:90749936..90749994,+ p5@FAS
Hg19::chr10:90750010..90750015,+ p15@FAS
Hg19::chr11:16919073..16919082,- p@chr11:16919073..16919082
-
Hg19::chr11:69471441..69471453,- p@chr11:69471441..69471453
-
Hg19::chr11:74145723..74145725,+ p@chr11:74145723..74145725
+
Hg19::chr12:114836635..114836650,- p@chr12:114836635..114836650
-
Hg19::chr12:114837411..114837414,- p@chr12:114837411..114837414
-
Hg19::chr12:114837457..114837465,- p@chr12:114837457..114837465
-
Hg19::chr12:114843910..114843921,- p6@TBX5
Hg19::chr12:114843940..114843955,- p2@TBX5
Hg19::chr12:114844068..114844089,+ p@chr12:114844068..114844089
+
Hg19::chr12:117799095..117799111,- p9@NOS1
Hg19::chr12:117799113..117799134,- p3@NOS1
Hg19::chr12:117799378..117799392,- p10@NOS1
Hg19::chr12:117799419..117799440,- p5@NOS1
Hg19::chr12:117799446..117799471,- p4@NOS1
Hg19::chr12:130841945..130841985,+ +
p@chr12:130841945..130841985
Hg19::chr12:20848257..20848271,+ p7@SLCO1C1
Hg19::chr12:26733687..26733698,- p@chr12:26733687..26733698
-
Hg19::chr12:26733721..26733726,- p@chr12:26733721..26733726
-
Hg19::chr13:112721457..112721482,+ p1@SOX1
Hg19::chr13:112721490..112721504,+ p2@SOX1
Hg19::chr13:112721521..112721535,+ p3@SOX1
Hg19::chr13:112721551..112721560,+ p4@SOX1
Hg19::chr13:75900519..75900574,- p10@TBC1D4
Hg19::chr14:104405379..104405383,+ p@chr14:104405379..104405383
+
Hg19::chr14:104405388..104405397,+ p@chr14:104405388..104405397
+
Hg19::chr16:22309943..22309949,- p@chr16:22309943..22309949
-
Hg19::chr16:23912540..23912551,+ p@chr16:23912540..23912551
+
Hg19::chr16:49891694..49891706,- p10@ZNF423
Hg19::chr16:52484467..52484485,- -
p@chr16:52484467..52484485
Hg19::chr16:52484576..52484584,- p@chr16:52484576..52484584
-
Hg19::chr16:5566803..5566806,+ p@chr16:5566803..5566806
+
Hg19::chr16:8627066..8627076,+ p@chr16:8627066..8627076
+
Hg19::chr16:8627360..8627377,+ p@chr16:8627360..8627377
+
Hg19::chr17:46806193..46806200,+ p@chr17:46806193..46806200
+
Hg19::chr18:44181418..44181441,- p3@LOXHD1
Hg19::chr18:44181442..44181462,- p2@LOXHD1
Hg19::chr18:61254221..61254236,+ p4@SERPINB13
Hg19::chr19:42384711..42384739,+ p3@CD79A
Hg19::chr1:146373572..146373600,+ p1@NBPF12
Hg19::chr1:146643708..146643719,- p7@PRKAB2
Hg19::chr1:146643723..146643782,- p2@PRKAB2
Hg19::chr1:146644036..146644086,- p1@PRKAB2
Hg19::chr1:185670947..185670956,+ p@chr1:185670947..185670956
+
Hg19::chr1:185703364..185703371,- p@chr1:185703364..185703371
-
Hg19::chr1:242020592..242020602,+ p5@EXO1
Hg19::chr1:242020623..242020630,+ p12@EXO1
Hg19::chr1:242020631..242020643,+ p9@EXO1
Hg19::chr1:242020659..242020669,+ p7@EXO1
Hg19::chr1:78879438..78879441,- p@chr1:78879438..78879441
-
Hg19::chr1:78958304..78958311,+ p8@PTGFR
Hg19::chr1:78958320..78958332,+ p2@PTGFR
Hg19::chr1:78958342..78958353,+ p3@PTGFR
Hg19::chr1:78958355..78958362,+ p4@PTGFR
Hg19::chr21:46172488..46172503,- p@chr21:46172488..46172503
-
Hg19::chr21:46172506..46172545,- p@chr21:46172506..46172545
-
Hg19::chr21:46276385..46276396,- p13@PTTG1IP
Hg19::chr2:11706154..11706185,+ p@chr2:11706154..11706185
+
Hg19::chr2:218876066..218876078,- p@chr2:218876066..218876078
-
Hg19::chr2:218876166..218876177,- p@chr2:218876166..218876177
-
Hg19::chr2:224467409..224467423,- p3@SCG2
Hg19::chr2:224467467..224467472,- p9@SCG2
Hg19::chr2:224467481..224467491,- p5@SCG2
Hg19::chr2:23647036..23647041,- p@chr2:23647036..23647041
-
Hg19::chr2:857378..857381,- p@chr2:857378..857381
-
Hg19::chr3:8407443..8407453,- p@chr3:8407443..8407453
-
Hg19::chr3:8407458..8407469,- p@chr3:8407458..8407469
-
Hg19::chr3:8407493..8407496,- -
p@chr3:8407493..8407496
Hg19::chr4:16685601..16685611,- p@chr4:16685601..16685611
-
Hg19::chr4:3124552..3124561,+ p@chr4:3124552..3124561
+
Hg19::chr5:37840113..37840126,- p3@GDNF
Hg19::chr5:37840137..37840156,- p2@GDNF
Hg19::chr5:37840160..37840165,- p6@GDNF
Hg19::chr5:43039771..43039781,- p3@AB463523
Hg19::chr6:110540042..110540046,+ p@chr6:110540042..110540046
+
Hg19::chr6:110546668..110546681,+ p@chr6:110546668..110546681
+
Hg19::chr6:123337191..123337197,+ p@chr6:123337191..123337197
+
Hg19::chr6:153240124..153240130,- p@chr6:153240124..153240130
-
Hg19::chr6:159420667..159420681,- p5@RSPH3
Hg19::chr6:40331129..40331139,- p@chr6:40331129..40331139
-
Hg19::chr7:115879301..115879308,- p1@ENST00000456289
Hg19::chr7:123726231..123726235,+ p@chr7:123726231..123726235
+
Hg19::chr7:3515955..3515958,+ p@chr7:3515955..3515958
+
Hg19::chr8:12612962..12613049,- p1@LONRF1
Hg19::chr8:12803204..12803216,+ p10@KIAA1456
Hg19::chr8:12803327..12803377,+ p21@KIAA1456
Hg19::chr8:143694142..143694155,- p@chr8:143694142..143694155
-
Hg19::chr8:143694177..143694197,- p@chr8:143694177..143694197
-
Hg19::chr8:143694204..143694215,- p@chr8:143694204..143694215
-
Hg19::chr8:27041770..27041779,+ p4@ENST00000521408
Hg19::chr8:27080771..27080783,+ p@chr8:27080771..27080783
+
Hg19::chr8:6062830..6062834,- p@chr8:6062830..6062834
-
Hg19::chr8:6081804..6081807,- p@chr8:6081804..6081807
-
Hg19::chr8:6115044..6115061,- p1@ENST00000519555
Hg19::chr8:6262267..6262273,- p@chr8:6262267..6262273
-
Hg19::chr8:6264222..6264257,- p2@LOC100287015
Hg19::chr8:71053573..71053617,- p25@NCOA2
Hg19::chr8:71053651..71053662,- p24@NCOA2
Hg19::chr8:71053689..71053698,- p31@NCOA2
Hg19::chr8:81787006..81787031,- p2@ZNF704


Enriched pathways on this co-expression clusterSummary:
Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.
Analyst: Emmanuel Dimont

link to source dataset
data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression clusterSummary: Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter.
Analyst: Erik Arner

link to source dataset
data


GO IDGO nameFDR corrected p-value
GO:0048518positive regulation of biological process0.00883372854427476
GO:0048523negative regulation of cellular process0.00883372854427476
GO:0048519negative regulation of biological process0.00883372854427476
GO:0007154cell communication0.0108053691275168
GO:0048522positive regulation of cellular process0.0108053691275168
GO:0007275multicellular organismal development0.0108053691275168
GO:0048731system development0.0108053691275168
GO:0043066negative regulation of apoptosis0.0108053691275168
GO:0043069negative regulation of programmed cell death0.0108053691275168
GO:0042981regulation of apoptosis0.0108053691275168
GO:0016477cell migration0.0108053691275168
GO:0043067regulation of programmed cell death0.0108053691275168
GO:0032502developmental process0.0108053691275168
GO:0048869cellular developmental process0.0108053691275168
GO:0030154cell differentiation0.0108053691275168
GO:0045145single-stranded DNA specific 5'-3' exodeoxyribonuclease activity0.0108053691275168
GO:0051580regulation of neurotransmitter uptake0.0108053691275168
GO:0031588AMP-activated protein kinase complex0.0108053691275168
GO:0051940regulation of catecholamine uptake during transmission of nerve impulse0.0108053691275168
GO:0060044negative regulation of cardiac muscle cell proliferation0.0108053691275168
GO:0051584regulation of dopamine uptake0.0108053691275168
GO:0060039pericardium development0.0108053691275168
GO:0051588regulation of neurotransmitter transport0.0108053691275168
GO:0048245eosinophil chemotaxis0.0108053691275168
GO:0051908double-stranded DNA specific 5'-3' exodeoxyribonuclease activity0.0108053691275168
GO:0045941positive regulation of transcription0.0109783992484107
GO:0045935positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.0117075890696853
GO:0048856anatomical structure development0.0142134057431183
GO:0048256flap endonuclease activity0.0142134057431183
GO:0051890regulation of cardioblast differentiation0.0142134057431183
GO:0008297single-stranded DNA specific exodeoxyribonuclease activity0.0142134057431183
GO:0051891positive regulation of cardioblast differentiation0.0142134057431183
GO:0051934catecholamine uptake during transmission of nerve impulse0.0142134057431183
GO:00353125'-3' exodeoxyribonuclease activity0.0142134057431183
GO:0051583dopamine uptake0.0142134057431183
GO:0008309double-stranded DNA specific exodeoxyribonuclease activity0.0142134057431183
GO:0060043regulation of cardiac muscle cell proliferation0.0142134057431183
GO:0051937catecholamine transport0.0142134057431183
GO:0032501multicellular organismal process0.0150050967142505
GO:0031325positive regulation of cellular metabolic process0.0154808719383287
GO:0006928cell motility0.0161985131820893
GO:0051674localization of cell0.0161985131820893
GO:0006915apoptosis0.0161985131820893
GO:0009893positive regulation of metabolic process0.0161985131820893
GO:0012501programmed cell death0.0161985131820893
GO:0050789regulation of biological process0.0161985131820893
GO:0019814immunoglobulin complex0.0161985131820893
GO:0035117embryonic arm morphogenesis0.0161985131820893
GO:0035140arm morphogenesis0.0161985131820893
GO:0019815B cell receptor complex0.0161985131820893
GO:0016265death0.0176861445070775
GO:0008219cell death0.0176861445070775
GO:0007165signal transduction0.0176861445070775
GO:0010002cardioblast differentiation0.0186135006843351
GO:0004958prostaglandin F receptor activity0.0186135006843351
GO:0015872dopamine transport0.0186135006843351
GO:0005771multivesicular body0.0186135006843351
GO:00084095'-3' exonuclease activity0.0186135006843351
GO:0035136forelimb morphogenesis0.0224846941476318
GO:0035115embryonic forelimb morphogenesis0.0224846941476318
GO:0005515protein binding0.0239348000934181
GO:0005102receptor binding0.0240458941701157
GO:0001938positive regulation of endothelial cell proliferation0.0248987934679273
GO:0060038cardiac muscle cell proliferation0.0248987934679273
GO:0014855striated muscle cell proliferation0.0248987934679273
GO:0065007biological regulation0.0250294907536934
GO:0004517nitric-oxide synthase activity0.0273565638859108
GO:0001963synaptic transmission, dopaminergic0.0273565638859108
GO:0030375thyroid hormone receptor coactivator activity0.0273565638859108
GO:0048513organ development0.0280081264378309
GO:0006916anti-apoptosis0.0280081264378309
GO:0001504neurotransmitter uptake0.0280081264378309
GO:0035051cardiac cell differentiation0.0280081264378309
GO:0004529exodeoxyribonuclease activity0.0280081264378309
GO:0016895exodeoxyribonuclease activity, producing 5'-phosphomonoesters0.0280081264378309
GO:0007567parturition0.0280081264378309
GO:0050930induction of positive chemotaxis0.0280081264378309
GO:0006510ATP-dependent proteolysis0.0310960275236025
GO:0050926regulation of positive chemotaxis0.0324601955437952
GO:0001755neural crest cell migration0.0324601955437952
GO:0004960thromboxane receptor activity0.0324601955437952
GO:0050927positive regulation of positive chemotaxis0.0324601955437952
GO:0050918positive chemotaxis0.0324601955437952
GO:0048468cell development0.0336533321008129
GO:0050853B cell receptor signaling pathway0.0340545295881786
GO:0043524negative regulation of neuron apoptosis0.0340545295881786
GO:0050921positive regulation of chemotaxis0.0340545295881786
GO:0007267cell-cell signaling0.0341347283659012
GO:0050920regulation of chemotaxis0.0355069644778001
GO:0001937negative regulation of endothelial cell proliferation0.0355069644778001
GO:0043542endothelial cell migration0.0355069644778001
GO:0006917induction of apoptosis0.0356361027681849
GO:0012502induction of programmed cell death0.0356361027681849
GO:0016564transcription repressor activity0.0356361027681849
GO:0045893positive regulation of transcription, DNA-dependent0.0380549399575205
GO:0008285negative regulation of cell proliferation0.0380549399575205
GO:0014032neural crest cell development0.0380549399575205
GO:0014033neural crest cell differentiation0.0380549399575205
GO:0004176ATP-dependent peptidase activity0.0380549399575205
GO:0002376immune system process0.0413852875303107
GO:0008283cell proliferation0.0439491641186795
GO:0030162regulation of proteolysis0.0439491641186795
GO:0001936regulation of endothelial cell proliferation0.0439491641186795
GO:0001772immunological synapse0.0439491641186795
GO:0008083growth factor activity0.0439821776891054
GO:0043065positive regulation of apoptosis0.0445591050977236
GO:0043068positive regulation of programmed cell death0.0447977380904846
GO:0042100B cell proliferation0.0447977380904846
GO:0007270nerve-nerve synaptic transmission0.0459949624042042
GO:0001935endothelial cell proliferation0.0459949624042042
GO:0030336negative regulation of cell migration0.0459949624042042
GO:0033002muscle cell proliferation0.0479693615694716



Enriched sample ontology terms on this co-expression clusterSummary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji

links to source dataset


uberon_data
disease_data


Uber Anatomy
Ontology termp-valuen
adult organism6.79e-36115
regional part of nervous system3.50e-2894
nervous system3.50e-2894
central nervous system1.26e-2782
neural tube1.08e-2657
neural rod1.08e-2657
future spinal cord1.08e-2657
neural keel1.08e-2657
regional part of brain2.50e-2359
brain3.29e-2369
future brain3.29e-2369
neurectoderm2.63e-2090
anterior neural tube5.55e-2042
regional part of forebrain1.31e-1941
forebrain1.31e-1941
future forebrain1.31e-1941
ectoderm2.67e-19173
presumptive ectoderm2.67e-19173
neural plate5.35e-1886
presumptive neural plate5.35e-1886
ectoderm-derived structure2.27e-17169
telencephalon4.38e-1734
gray matter4.48e-1734
brain grey matter4.48e-1734
cerebral hemisphere1.35e-1632
regional part of telencephalon1.40e-1633
anterior region of body2.41e-14129
craniocervical region2.41e-14129
head3.42e-14123
cerebral cortex6.85e-1325
pallium6.85e-1325
regional part of cerebral cortex1.04e-1222
neocortex1.08e-1120
pre-chordal neural plate1.85e-1161
posterior neural tube7.21e-0815
chordal neural plate7.21e-0815
segmental subdivision of nervous system2.75e-0713
segmental subdivision of hindbrain6.36e-0712
hindbrain6.36e-0712
presumptive hindbrain6.36e-0712
Disease
Ontology termp-valuen
neuroectodermal tumor9.79e-0710


Overrepresented TFBS (DNA) motifs on this co-expression clusterSummary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon

link to source data
Novel motifs
data

Jaspar motifs
data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysisSummary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained.
Analyst: Erik Arner

link to source dataset

data


(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
SUZ12#23512135.81701028431984.21795873082e-072.02724064375568e-05



Relative expression of the co-expression clusterSummary:Co-expression clusters are compared against FANTOM5 samples to obtain relative expression.
Analyst:NA

link to data source
data