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{{Coexpression_clusters
{{Coexpression_clusters
|full_id=C2154_Eosinophils_Neutrophils_Renal_Endothelial_tridermal_Hepatic_Basophils
|full_id=C2154_Eosinophils_Neutrophils_Renal_Endothelial_tridermal_Hepatic_Basophils
|gostat_on_coexpression_clusters=GO:0004706!JUN kinase kinase kinase activity!0.0259929336955715!4296$GO:0050790!regulation of catalytic activity!0.0259929336955715!4296;2771$GO:0065009!regulation of a molecular function!0.0259929336955715!4296;2771$GO:0031280!negative regulation of cyclase activity!0.0259929336955715!2771$GO:0007194!negative regulation of adenylate cyclase activity!0.0259929336955715!2771$GO:0051350!negative regulation of lyase activity!0.0259929336955715!2771$GO:0000080!G1 phase of mitotic cell cycle!0.0259929336955715!4296$GO:0004709!MAP kinase kinase kinase activity!0.0259929336955715!4296$GO:0046328!regulation of JNK cascade!0.0259929336955715!4296$GO:0051318!G1 phase!0.0259929336955715!4296$GO:0007257!activation of JNK activity!0.0261157639195323!4296$GO:0043507!positive regulation of JNK activity!0.0262178539814203!4296$GO:0043506!regulation of JNK activity!0.0263039900870814!4296$GO:0015071!protein phosphatase type 2C activity!0.0314401238840169!9647$GO:0045761!regulation of adenylate cyclase activity!0.0314401238840169!2771$GO:0007584!response to nutrient!0.0314401238840169!2771$GO:0031279!regulation of cyclase activity!0.0314401238840169!2771$GO:0051339!regulation of lyase activity!0.0314401238840169!2771$GO:0046777!protein amino acid autophosphorylation!0.0314401238840169!4296$GO:0016540!protein autoprocessing!0.0314401238840169!4296$GO:0000187!activation of MAPK activity!0.0320321372125483!4296$GO:0008287!protein serine/threonine phosphatase complex!0.0320321372125483!9647$GO:0031667!response to nutrient levels!0.0320321372125483!2771$GO:0051259!protein oligomerization!0.0320321372125483!4296$GO:0007254!JNK cascade!0.0320321372125483!4296$GO:0004722!protein serine/threonine phosphatase activity!0.0320321372125483!9647$GO:0009991!response to extracellular stimulus!0.0320321372125483!2771$GO:0043406!positive regulation of MAP kinase activity!0.0320321372125483!4296$GO:0031098!stress-activated protein kinase signaling pathway!0.0320321372125483!4296$GO:0004702!receptor signaling protein serine/threonine kinase activity!0.0329950406170268!4296$GO:0006793!phosphorus metabolic process!0.0329950406170268!4296;9647$GO:0006796!phosphate metabolic process!0.0329950406170268!4296;9647$GO:0007188!G-protein signaling, coupled to cAMP nucleotide second messenger!0.0329950406170268!2771$GO:0051329!interphase of mitotic cell cycle!0.0329950406170268!4296$GO:0019933!cAMP-mediated signaling!0.0329950406170268!2771$GO:0043086!negative regulation of catalytic activity!0.0329950406170268!2771$GO:0051325!interphase!0.0332073572743918!4296$GO:0043405!regulation of MAP kinase activity!0.0334083090119861!4296$GO:0016485!protein processing!0.0346456689926608!4296$GO:0007242!intracellular signaling cascade!0.037377126989421!4296;2771$GO:0007187!G-protein signaling, coupled to cyclic nucleotide second messenger!0.0389269169469197!2771$GO:0019935!cyclic-nucleotide-mediated signaling!0.0396181824281736!2771$GO:0005813!centrosome!0.0408833829227281!4296$GO:0045860!positive regulation of protein kinase activity!0.0408833829227281!4296$GO:0043687!post-translational protein modification!0.0408833829227281!4296;9647$GO:0033674!positive regulation of kinase activity!0.0408833829227281!4296$GO:0030145!manganese ion binding!0.0408833829227281!9647$GO:0005815!microtubule organizing center!0.0408833829227281!4296$GO:0051347!positive regulation of transferase activity!0.0408833829227281!4296$GO:0000165!MAPKKK cascade!0.0408833829227281!4296$GO:0042803!protein homodimerization activity!0.0422094848719357!4296$GO:0005057!receptor signaling protein activity!0.0463500026719706!4296
|id=C2154
|id=C2154
}}
}}

Revision as of 17:36, 18 May 2012


Full id: C2154_Eosinophils_Neutrophils_Renal_Endothelial_tridermal_Hepatic_Basophils



Phase1 CAGE Peaks

Hg19::chr11:65381643..65381767,-p1@MAP3K11
Hg19::chr22:22307182..22307197,-p2@PPM1F
Hg19::chr22:22307199..22307242,-p1@PPM1F
Hg19::chr3:50273625..50273655,+p1@GNAI2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0004706JUN kinase kinase kinase activity0.0259929336955715
GO:0050790regulation of catalytic activity0.0259929336955715
GO:0065009regulation of a molecular function0.0259929336955715
GO:0031280negative regulation of cyclase activity0.0259929336955715
GO:0007194negative regulation of adenylate cyclase activity0.0259929336955715
GO:0051350negative regulation of lyase activity0.0259929336955715
GO:0000080G1 phase of mitotic cell cycle0.0259929336955715
GO:0004709MAP kinase kinase kinase activity0.0259929336955715
GO:0046328regulation of JNK cascade0.0259929336955715
GO:0051318G1 phase0.0259929336955715
GO:0007257activation of JNK activity0.0261157639195323
GO:0043507positive regulation of JNK activity0.0262178539814203
GO:0043506regulation of JNK activity0.0263039900870814
GO:0015071protein phosphatase type 2C activity0.0314401238840169
GO:0045761regulation of adenylate cyclase activity0.0314401238840169
GO:0007584response to nutrient0.0314401238840169
GO:0031279regulation of cyclase activity0.0314401238840169
GO:0051339regulation of lyase activity0.0314401238840169
GO:0046777protein amino acid autophosphorylation0.0314401238840169
GO:0016540protein autoprocessing0.0314401238840169
GO:0000187activation of MAPK activity0.0320321372125483
GO:0008287protein serine/threonine phosphatase complex0.0320321372125483
GO:0031667response to nutrient levels0.0320321372125483
GO:0051259protein oligomerization0.0320321372125483
GO:0007254JNK cascade0.0320321372125483
GO:0004722protein serine/threonine phosphatase activity0.0320321372125483
GO:0009991response to extracellular stimulus0.0320321372125483
GO:0043406positive regulation of MAP kinase activity0.0320321372125483
GO:0031098stress-activated protein kinase signaling pathway0.0320321372125483
GO:0004702receptor signaling protein serine/threonine kinase activity0.0329950406170268
GO:0006793phosphorus metabolic process0.0329950406170268
GO:0006796phosphate metabolic process0.0329950406170268
GO:0007188G-protein signaling, coupled to cAMP nucleotide second messenger0.0329950406170268
GO:0051329interphase of mitotic cell cycle0.0329950406170268
GO:0019933cAMP-mediated signaling0.0329950406170268
GO:0043086negative regulation of catalytic activity0.0329950406170268
GO:0051325interphase0.0332073572743918
GO:0043405regulation of MAP kinase activity0.0334083090119861
GO:0016485protein processing0.0346456689926608
GO:0007242intracellular signaling cascade0.037377126989421
GO:0007187G-protein signaling, coupled to cyclic nucleotide second messenger0.0389269169469197
GO:0019935cyclic-nucleotide-mediated signaling0.0396181824281736
GO:0005813centrosome0.0408833829227281
GO:0045860positive regulation of protein kinase activity0.0408833829227281
GO:0043687post-translational protein modification0.0408833829227281
GO:0033674positive regulation of kinase activity0.0408833829227281
GO:0030145manganese ion binding0.0408833829227281
GO:0005815microtubule organizing center0.0408833829227281
GO:0051347positive regulation of transferase activity0.0408833829227281
GO:0000165MAPKKK cascade0.0408833829227281
GO:0042803protein homodimerization activity0.0422094848719357
GO:0005057receptor signaling protein activity0.0463500026719706



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


This analysis result is provided for C0 - C305 clusters.