Personal tools

Difference between revisions of "Coexpression cluster:C219"

From FANTOM5_SSTAR

Jump to: navigation, search
Line 1: Line 1:
 
{{Coexpression_clusters
 
{{Coexpression_clusters
 +
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.687564905657314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458861145677706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.015328344045715,0,0,0,0,0,0,0,0.131832994540557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0313128785611204,0.0445145467412709,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.433085374649978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487062179939574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.659305303673217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120245177400006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115967372264001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.33301477157228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.186370931269659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
 
|full_id=C219_nasal_Basophils_amniotic_Melanocyte_CD14_Osteoblast_duodenum
 
|full_id=C219_nasal_Basophils_amniotic_Melanocyte_CD14_Osteoblast_duodenum
 
|id=C219
 
|id=C219

Revision as of 05:53, 12 September 2012


Full id: C219_nasal_Basophils_amniotic_Melanocyte_CD14_Osteoblast_duodenum



Phase1 CAGE Peaks

  Short description
Hg19::chr10:14060742..14060746,+ p@chr10:14060742..14060746
+
Hg19::chr10:68462506..68462526,- p@chr10:68462506..68462526
-
Hg19::chr10:71350259..71350265,- p@chr10:71350259..71350265
-
Hg19::chr10:97760040..97760043,- p1@ENST00000415692
Hg19::chr11:122906539..122906546,+ p1@RPL34P23
Hg19::chr11:14462294..14462296,+ p1@ENST00000534211
Hg19::chr11:43549565..43549568,+ p@chr11:43549565..43549568
+
Hg19::chr11:45892060..45892062,+ p6@CRY2
Hg19::chr11:74840786..74840787,+ p@chr11:74840786..74840787
+
Hg19::chr11:90493445..90493448,+ p@chr11:90493445..90493448
+
Hg19::chr12:40462453..40462466,- p1@RPL30P13
Hg19::chr12:51500538..51500541,+ p1@ENST00000469738
Hg19::chr12:7773133..7773138,+ p@chr12:7773133..7773138
+
Hg19::chr13:25940302..25940311,- p1@TCEB2P1
Hg19::chr13:66961456..66961458,+ p@chr13:66961456..66961458
+
Hg19::chr15:58985490..58985492,- p1@HSP90AB4P
Hg19::chr15:59700364..59700379,- p1@ENST00000557949
Hg19::chr16:30975509..30975526,+ p@chr16:30975509..30975526
+
Hg19::chr16:89228757..89228763,+ p1@AL133082
Hg19::chr17:16521327..16521342,- p1@ENST00000414124
Hg19::chr17:22021558..22021578,+ p@chr17:22021558..22021578
+
Hg19::chr17:43080709..43080712,+ p@chr17:43080709..43080712
+
Hg19::chr17:79268994..79268997,+ p@chr17:79268994..79268997
+
Hg19::chr18:5233213..5233222,- p@chr18:5233213..5233222
-
Hg19::chr18:57491179..57491188,+ p@chr18:57491179..57491188
+
Hg19::chr19:2809075..2809078,- -
p@chr19:2809075..2809078
Hg19::chr19:47061813..47061817,+ p1@ENST00000503632
Hg19::chr19:6413611..6413633,- p@chr19:6413611..6413633
-
Hg19::chr1:117318252..117318257,- p1@FTH1P22
Hg19::chr1:200297905..200297909,+ p1@ENST00000425737
Hg19::chr22:36294464..36294467,- p3@ENST00000436210
Hg19::chr2:12864309..12864314,- p@chr2:12864309..12864314
-
Hg19::chr2:130697797..130697815,- p1@ENST00000450665
Hg19::chr2:143848547..143848560,- p@chr2:143848547..143848560
-
Hg19::chr2:212163945..212163947,- p1@ENST00000413068
Hg19::chr2:24166687..24166695,+ p1@ENST00000445371
Hg19::chr2:38222461..38222479,+ p@chr2:38222461..38222479
+
Hg19::chr2:42760612..42760623,- p1@ENST00000399891
Hg19::chr3:109362891..109362900,- p@chr3:109362891..109362900
-
Hg19::chr3:113569614..113569616,- p1@ENST00000485426
Hg19::chr3:74150399..74150403,+ p1@ENST00000468766
Hg19::chr4:130879658..130879660,- p@chr4:130879658..130879660
-
Hg19::chr4:188720797..188720798,+ p@chr4:188720797..188720798
+
Hg19::chr4:22697096..22697099,+ +
p@chr4:22697096..22697099
Hg19::chr4:96566509..96566520,- p1@ENST00000475925
Hg19::chr4:99661773..99661783,+ p1@BTF3P13
Hg19::chr5:12004086..12004090,+ p@chr5:12004086..12004090
+
Hg19::chr5:138643069..138643082,+ p13@MATR3
Hg19::chr5:152872011..152872015,- p@chr5:152872011..152872015
-
Hg19::chr5:52199700..52199703,+ p1@ENST00000490961
Hg19::chr6:116580350..116580354,- p1@ENST00000435100
Hg19::chr6:170814648..170814653,- p@chr6:170814648..170814653
-
Hg19::chr6:35523619..35523622,+ p1@ENST00000403958
Hg19::chr6:76011104..76011109,+ p@chr6:76011104..76011109
+
Hg19::chr7:143785978..143785980,+ p@chr7:143785978..143785980
+
Hg19::chr7:152445973..152445978,+ p2@ATP5F1P3
Hg19::chr7:6647805..6647808,+ p@chr7:6647805..6647808
+
Hg19::chr8:22686593..22686594,+ p@chr8:22686593..22686594
+
Hg19::chr8:48505224..48505242,- p1@ENST00000517810
Hg19::chr9:106783310..106783311,+ p@chr9:106783310..106783311
+
Hg19::chr9:12278478..12278483,+ p@chr9:12278478..12278483
+
Hg19::chr9:30943567..30943573,+ p@chr9:30943567..30943573
+
Hg19::chr9:6835690..6835692,+ p@chr9:6835690..6835692
+
Hg19::chrX:102053161..102053167,+ p1@ENST00000413797
Hg19::chrX:119495912..119495921,+ p2@ATP1B4
Hg19::chrX:13492196..13492204,- p@chrX:13492196..13492204
-
Hg19::chrX:37621131..37621132,+ p@chrX:37621131..37621132
+


Enriched pathways on this co-expression clusterSummary:
Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.
Analyst: Emmanuel Dimont

link to source dataset
data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression clusterSummary: Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter.
Analyst: Erik Arner

link to source dataset
data


No GOStat results

Enriched sample ontology terms on this co-expression clusterSummary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji

links to source dataset

cell_data



Cell Type
Ontology termp-valuen
classical monocyte3.50e-1045
CD14-positive, CD16-negative classical monocyte4.04e-1042
native cell2.16e-08722


Overrepresented TFBS (DNA) motifs on this co-expression clusterSummary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon

link to source data
Novel motifs
data

Jaspar motifs
data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysisSummary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained.
Analyst: Erik Arner

link to source dataset

data


No analysis results for this cluster

Relative expression of the co-expression clusterSummary:Co-expression clusters are compared against FANTOM5 samples to obtain relative expression.
Analyst:NA

link to data source
data