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{{Coexpression_clusters
{{Coexpression_clusters
|coexpression_dpi_cluster_scores_median=0.237220288771276,0.433418447730772,0.107857131651075,0.301189131856195,0.369379760262065,0.438491250631057,0,0,0,0,0,0,0,0.241197240602013,0.299766997383943,0.370078076395268,0.532853467332704,0.503917314008493,0.470076805124828,0.0504265701716883,0.385249547898631,0.211363379907382,0,0.055712496781182,0.21157788488363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179393856014993,0.547783817687583,0.654115425743306,0.761922963904006,0.911560996733774,1.37788587502671,0,0,0.0702852779578603,0.2012348043535,0,0,0,0,0,0,0,0,0.0787331152135556,0.269567716763895,0.378136519934222,0.194599788733868,0.264581462950963,0.3223169313069,0.211383522176996,0.0998244934409575,0,0.222571133856035,0,0,0.346413671224125,0,0.703352410643561,0.160318030086386,0.087969206950705,0.0882151269915992,0.403663714553037,0,0.238750187614182,0,0,0,0.842837771891025,0.82596932925153,0.14526713795306,1.1249596265021,0.541913406716879,0.510908164506841,0.801914531309634,0.790989776337165,0.117672595682223,0.517206646299765,0.36317845141571,0.90922425020828,0.984195902018183,0.0914282698219536,0,0,0.060489586087507,0,0,0,0,0.0503156775564332,0.0815818795468414,0,0.436300788770441,0,0.235179391914214,0,0.0969923612426051,0,0.158054039799331,0.283179832627911,0.27907996567079,0.28045486232806,0.545487094805133,0.432722283453891,0.463502860712094,0.491451019385306,0.387876427887242,0.4858809678045,0.396013528841488,0.587620915114737,0.634765176991576,0.442014875358687,0.439166536387742,0.592135549973575,0.72099524817986,0.344200666039796,0.372264631443972,0,0,0,0,0,0,0.0428357178336246,0,0,0,0.624921687118726,0,0.165650208579294,0,0,0,0,0,0,0,0,0,0,0,0.380648525776858,0.149703653910611,0.392712270020621,0,0,0.597031121856075,0,0,0.0687674306079092,0,0,0,0,0.122480735257124,0,0,0,0.131049308664644,0.361595267193767,0.378208248705171,0.516277474062472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.580157969473185,0.363213262453237,0.586609035393285,0.384172143654239,0.660539583551993,0.4298500264474,0.185223678206009,0,0.0994069197460863,0,0.185498059694978,0.0580378687812504,0.319156715876182,0,0.217871311742009,0,0,0,0,0,0,0,0,0.66222623519348,0.897171456118256,0,0.0587225291397336,0.0811586845710415,0,0,0,0,0,0,0,0,0,0.214297657915009,0,0,0,0.489361491931281,0.54417382625972,0.319118576558439,1.07999318406892,1.09410254811374,0.94088579376778,0.871735055000105,0.663828387350077,1.0923828723077,0.790542255338349,0.635597130391344,0.453882508168653,0.100594818706322,1.05604536868262,1.10266953316802,0,0,0,0,0,0,0.299383340661298,0.575455213993485,0.872458260171394,0.247687297406738,0.483848080063906,0.656939731972323,0.395183177140817,0.405192107526926,0.519605203804627,0.149414895309998,0.181630511148827,0.310883002625745,0.0940232912102451,0,0,0.0472025886002021,0.281137003473584,0.101144976784816,0,0,0,0,0,0.329872362058396,0,0.317975544424619,1.25442716825847,0,0.176580223334895,0,0,0,0,0,0,0,0,0.28496489308846,0,0,0,0,0,0.353477550382573,0.208493616028385,0.283532349465927,0.150298798479565,0.186702468492164,0.304300236111007,0.225777710137492,0.659086868542547,0,0,0,0,0.285487793508896,0.881445104725795,0.229691380353826,0.404862423712826,0.314838459985835,0,0.555643208127794,0.155146078715492,0.395960939016341,0.355167459361676,0.0757768918964265,0.098874643618352,0.154709651609437,0.291060059408382,0.616978789592868,0,0,0.0483689238882358,0.345000035290412,0.412477887232674,0.152673061679609,0,0.469779013844766,0.493179530162882,0.0555694062070307,0.057439935027299,0.513239225317154,0.322783652810203,0.69728461598638,0.609504360803418,0,0,0.147929950453612,0.456205191178018,0.581717156524987,0,0.112184954677754,0.132474558164796,0.131862706497632,0.492910669826004,0.473599267420186,0,0.130312767515111,0,0,0,0.32832365318808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111604019374097,0,0,0,0,0,0,0,0.0571597974145305,0,0,0.152976191689497,1.21857076943103,0,0,0,0,0.407424548379032,0,0,0,0.201904988352547,0,0,0,0.106634247942447,0,0,0,0.236788992518656,0,0,0,0,0,0,0,0.0494492378997174,0,0.0455495587624001,0,0.0861409897892114,0,0,0.284070312136508,0,0,0,0,0.214314512399756,0.163753939700048,0.414823712432763,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0368115019473605,0,0,0,0,0.0799779514979129,0.415833616916382,0.0914082188667263,0,0,0,0.144444803709627,0,0,0.49808213857435,0,0,0,0,0,0,0,0,0,0,0,0.230169522172044,0,0,0,0,0.110915157511936,0,0.513191942338439,0,0,0.0266602233572113,0,0,0.315396146312343,0,0,0,0,0,0,0,0,0,0,0.198079800894878,0,0.0557243212092205,0,0,0,0.780107188314926,0.486068129836481,0.386632006784959,0.203858513377274,0.359394923119558,0.0874873383132558,0.16740132195862,0.663040865015856,0,0,0,0,0,0,0,0.0554560868715733,0,0,0,0,0,0.0256128589246175,0,0.190790953137653,0.135826369078607,0,0,0,0.586450165845621,0.220655051407841,0,0,0,0.12273585496983,0,0,0,0.351493471562448,0.306610637673365,0,0.0528027736253869,0.101906882599192,0,0,0.268179834491718,0.211872352186983,0.424384398608277,0.174979787616842,0,0,0,0,0,0,0,0,0,0.0948387187168004,0.0970426649908326,0,0.0456863240084368,0.0261639379934246,0,0.0511449590802371,0,0,0,0,0,0.310647357565102,0.653762238055715,0.324202530144468,0.289369303264642,0.399571176171076,0,0.226991548579056,0.280438486486647,0.561391501615218,0.367485696021644,0.120110941866645,0,0.117445612912116,0.42468972609494,0.456501463585907,0.310372543067337,0.161599412638961,0,0.148254195206626,0.134717986498045,0.0845123315265278,0.165551091449075,0.145536958608929,0,0.531960198069164,0.480078399026743,0,0,0,0.100713120693921,0.0887404631064488,0,0,0,0.405518342222309,0.632382447754508,0,0,0,0,0.128861217532784,0,0.0562408777463757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0444710875952832,0.35374846642697,0,0.22503262037281,0,0,0,0.549497978351569,0,0,0.540170697474137,0,0.0270351810347199,0,0.064320887423737,0,0,0.0562622698659916,0.121543854523997,0,0,0,0,0,0.331254412181952,0,0.254225290755653,0.138634732812718,0,0,0,0,0,0.0283831740999027,0,0.0815945607332269,0.0267031128419265,0,0,0.395960949090736,0,0,0,0,0,0,0.35060329304396,0,0,0.0285589446518912,0.0276646214758744,0,0,0.143784432664055,0,0,0,0,0,0.215713921073337,0,0,0.229280654886655,0,0.0817850418435885,0.127570266205338,0,0,0,0,0.266413775268255,0,0,0,0,0,0,0,0.0424427259395948,0.334416438693572,0.390428660981575,0,0.20326475509102,0,0,0,0,0.0322859259446875,0.0858467613960337,0,0.0952210875623146,0,0,0,0.26606967772796,0.60838567434661,0.243502208731316,0.347271429724099,0,0,0,0,0,0,0.0581752393062885,0,0.0553718247010331,0,0.184415109078388,1.1581157383404,0.969376829467913,0.605131070956515,0,0,0.13990914075318,0,0,0,0,0.184819397560959,0.186370931269659,0,0.0816590494793475,0.267860402174185,0.385317825735311,0.0271819376754428,0.0261550693490902,0,0.160027141720365,0.257311010036214,0.218312325465419,0.374552815304851,0.0283076897745917,0.176685961871915,0.60140188521406,0,0,0,0,0.524579074618365,0.20715139958257,0.419556726568814,0,0.302410802070244,0
|full_id=C288_Chondrocyte_Renal_Pericytes_Fibroblast_aorta_Smooth_Meningeal
|full_id=C288_Chondrocyte_Renal_Pericytes_Fibroblast_aorta_Smooth_Meningeal
|gostat_on_coexpression_clusters=GO:0030133!transport vesicle!0.032585658777817!633$GO:0005201!extracellular matrix structural constituent!0.032585658777817!633$GO:0016023!cytoplasmic membrane-bound vesicle!0.032699197658576!633$GO:0031988!membrane-bound vesicle!0.032699197658576!633$GO:0005578!proteinaceous extracellular matrix!0.032699197658576!633$GO:0031410!cytoplasmic vesicle!0.032699197658576!633$GO:0031982!vesicle!0.032699197658576!633
|gostat_on_coexpression_clusters=GO:0030133!transport vesicle!0.032585658777817!633$GO:0005201!extracellular matrix structural constituent!0.032585658777817!633$GO:0016023!cytoplasmic membrane-bound vesicle!0.032699197658576!633$GO:0031988!membrane-bound vesicle!0.032699197658576!633$GO:0005578!proteinaceous extracellular matrix!0.032699197658576!633$GO:0031410!cytoplasmic vesicle!0.032699197658576!633$GO:0031982!vesicle!0.032699197658576!633

Revision as of 15:41, 12 September 2012


Full id: C288_Chondrocyte_Renal_Pericytes_Fibroblast_aorta_Smooth_Meningeal



Phase1 CAGE Peaks

Hg19::chrX:152760428..152760447,+p1@BGN
Hg19::chrX:152770059..152770066,+p33@BGN
Hg19::chrX:152770101..152770112,+p23@BGN
Hg19::chrX:152770151..152770173,+p11@BGN
Hg19::chrX:152770174..152770191,+p27@BGN
Hg19::chrX:152770200..152770258,+p4@BGN
Hg19::chrX:152770207..152770220,-p@chrX:152770207..152770220
-
Hg19::chrX:152770262..152770308,-p@chrX:152770262..152770308
-
Hg19::chrX:152770265..152770294,+p15@BGN
Hg19::chrX:152770299..152770310,+p13@BGN
Hg19::chrX:152770690..152770747,+p@chrX:152770690..152770747
+
Hg19::chrX:152770747..152770793,-p@chrX:152770747..152770793
-
Hg19::chrX:152771310..152771324,+p22@BGN
Hg19::chrX:152771355..152771373,+p17@BGN
Hg19::chrX:152771357..152771376,-p@chrX:152771357..152771376
-
Hg19::chrX:152771377..152771404,+p14@BGN
Hg19::chrX:152771413..152771438,+p6@BGN
Hg19::chrX:152771423..152771451,-p@chrX:152771423..152771451
-
Hg19::chrX:152771450..152771463,+p19@BGN
Hg19::chrX:152771465..152771514,-p@chrX:152771465..152771514
-
Hg19::chrX:152771488..152771513,+p21@BGN
Hg19::chrX:152771988..152772002,+p@chrX:152771988..152772002
+
Hg19::chrX:152772003..152772056,+p@chrX:152772003..152772056
+
Hg19::chrX:152772015..152772028,-p@chrX:152772015..152772028
-
Hg19::chrX:152772068..152772079,+p@chrX:152772068..152772079
+
Hg19::chrX:152772312..152772340,-p@chrX:152772312..152772340
-
Hg19::chrX:152772329..152772363,+p@chrX:152772329..152772363
+
Hg19::chrX:152772356..152772373,-p@chrX:152772356..152772373
-
Hg19::chrX:152772503..152772517,+p@chrX:152772503..152772517
+
Hg19::chrX:152772540..152772564,+p@chrX:152772540..152772564
+
Hg19::chrX:152772571..152772585,+p@chrX:152772571..152772585
+
Hg19::chrX:152772597..152772622,+p@chrX:152772597..152772622
+
Hg19::chrX:152773690..152773718,+p10@BGN
Hg19::chrX:152773762..152773796,+p9@BGN
Hg19::chrX:152773830..152773842,+p25@BGN
Hg19::chrX:152773922..152773952,+p16@BGN
Hg19::chrX:152773994..152774035,+p7@BGN
Hg19::chrX:152774081..152774113,+p5@BGN
Hg19::chrX:152774119..152774158,+p12@BGN
Hg19::chrX:152774177..152774196,-p5@CU678629
Hg19::chrX:152774185..152774199,+p8@BGN
Hg19::chrX:152774275..152774309,+p3@BGN
Hg19::chrX:152774321..152774336,+p26@BGN
Hg19::chrX:152774348..152774479,+p2@BGN
Hg19::chrX:152774354..152774382,-p1@CU678629


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0030133transport vesicle0.032585658777817
GO:0005201extracellular matrix structural constituent0.032585658777817
GO:0016023cytoplasmic membrane-bound vesicle0.032699197658576
GO:0031988membrane-bound vesicle0.032699197658576
GO:0005578proteinaceous extracellular matrix0.032699197658576
GO:0031410cytoplasmic vesicle0.032699197658576
GO:0031982vesicle0.032699197658576



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
splanchnic layer of lateral plate mesoderm5.17e-2584
vasculature3.95e-2379
vascular system3.95e-2379
anatomical cluster1.89e-21286
vessel8.18e-2169
anatomical conduit4.99e-20241
blood vessel8.72e-2060
epithelial tube open at both ends8.72e-2060
blood vasculature8.72e-2060
vascular cord8.72e-2060
epithelial tube9.15e-20118
cell layer9.30e-19312
circulatory system1.95e-18113
tube3.13e-18194
cardiovascular system7.94e-18110
epithelium1.14e-17309
organism subdivision3.60e-17365
artery2.23e-1642
arterial blood vessel2.23e-1642
arterial system2.23e-1642
somite2.08e-1483
paraxial mesoderm2.08e-1483
presomitic mesoderm2.08e-1483
presumptive segmental plate2.08e-1483
trunk paraxial mesoderm2.08e-1483
presumptive paraxial mesoderm2.08e-1483
dermomyotome3.46e-1470
skeletal muscle tissue4.04e-1461
striated muscle tissue4.04e-1461
myotome4.04e-1461
muscle tissue4.22e-1463
musculature4.22e-1463
musculature of body4.22e-1463
systemic artery1.80e-1333
systemic arterial system1.80e-1333
trunk mesenchyme2.47e-13143
multi-cellular organism3.38e-13659
multi-tissue structure1.38e-12347
unilaminar epithelium2.02e-12138
multilaminar epithelium6.88e-1182
primary circulatory organ2.99e-1027
heart8.58e-1024
primitive heart tube8.58e-1024
primary heart field8.58e-1024
anterior lateral plate mesoderm8.58e-1024
heart tube8.58e-1024
heart primordium8.58e-1024
cardiac mesoderm8.58e-1024
cardiogenic plate8.58e-1024
heart rudiment8.58e-1024
trunk3.86e-09216
anatomical system7.21e-09625
aorta8.41e-0921
aortic system8.41e-0921
anatomical group9.39e-09626
adult organism4.98e-07115


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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