Personal tools

Coexpression cluster:C4682: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|full_id=C4682_small_cervix_uterus_prostate_Smooth_Prostate_smooth
|full_id=C4682_small_cervix_uterus_prostate_Smooth_Prostate_smooth
|id=C4682
|id=C4682
|ontology_enrichment_celltype=
|ontology_enrichment_celltype=CL:0002622!4.10e-07!3
|ontology_enrichment_disease=DOID:14566!7.10e-19!239;DOID:162!1.56e-16!235;DOID:305!1.13e-15!106;DOID:0050687!5.41e-15!143
|ontology_enrichment_disease=DOID:305!3.04e-09!106;DOID:14566!1.39e-08!239;DOID:162!2.31e-07!235;DOID:0050687!7.04e-07!143
|ontology_enrichment_uberon=UBERON:0001046!8.24e-15!19;UBERON:0000162!2.45e-14!14;UBERON:0001353!2.45e-14!14;UBERON:0000163!2.45e-14!14;UBERON:0006866!2.45e-14!14;UBERON:0000164!2.45e-14!14;UBERON:0000931!2.45e-14!14;UBERON:0003101!7.25e-14!22;UBERON:0000079!7.25e-14!22;UBERON:0004122!4.69e-13!15;UBERON:0003937!5.89e-13!12;UBERON:0005399!5.89e-13!12;UBERON:0005156!4.99e-12!59;UBERON:0000990!4.99e-12!59;UBERON:0002367!8.27e-12!11;UBERON:0010147!8.27e-12!11;UBERON:0009846!8.27e-12!11;UBERON:0003353!8.27e-12!11;UBERON:0004902!8.27e-12!11;UBERON:0003820!8.27e-12!11;UBERON:0009847!8.27e-12!11;UBERON:0001737!1.17e-10!9;UBERON:0001008!8.74e-10!45;UBERON:0006554!4.37e-09!44;UBERON:0004175!3.04e-08!25;UBERON:0000059!2.14e-07!11
|ontology_enrichment_uberon=UBERON:0001046!2.15e-17!19;UBERON:0001737!6.68e-16!9;UBERON:0000162!2.05e-15!14;UBERON:0001353!2.05e-15!14;UBERON:0000163!2.05e-15!14;UBERON:0006866!2.05e-15!14;UBERON:0000164!2.05e-15!14;UBERON:0000931!2.05e-15!14;UBERON:0003937!4.36e-15!12;UBERON:0005399!4.36e-15!12;UBERON:0004122!3.50e-14!15;UBERON:0002367!2.05e-13!11;UBERON:0010147!2.05e-13!11;UBERON:0009846!2.05e-13!11;UBERON:0003353!2.05e-13!11;UBERON:0004902!2.05e-13!11;UBERON:0003820!2.05e-13!11;UBERON:0009847!2.05e-13!11;UBERON:0005156!4.80e-12!59;UBERON:0000990!4.80e-12!59;UBERON:0003101!5.68e-12!22;UBERON:0000079!5.68e-12!22;UBERON:0001008!1.55e-10!48;UBERON:0004175!5.51e-10!25;UBERON:0004921!9.09e-10!118;UBERON:0000059!1.19e-09!11;UBERON:0006554!1.40e-09!47;UBERON:0003064!4.60e-09!28;UBERON:0005795!2.86e-08!22;UBERON:0004119!3.41e-08!160;UBERON:0000925!3.41e-08!160;UBERON:0006595!3.41e-08!160;UBERON:0003975!3.44e-08!22;UBERON:0000077!2.73e-07!29;UBERON:0000995!4.57e-07!21;UBERON:0001007!6.60e-07!145;UBERON:0001555!6.60e-07!145;UBERON:0007026!6.60e-07!145;UBERON:0001155!7.68e-07!9
|tf_chipseq_enrich=E2F1#1869;3:4.90738921487932:0.00846098534723939:0.0327668662370341!NR3C1#2908;2:9.98201555411536:0.0127847436554717:0.0460788157032753!SMARCB1#6598;2:12.1684771874383:0.00867500222192174:0.0330129921678795
|tf_chipseq_enrich=E2F1#1869;3:4.90738921487932:0.00846098534723939:0.0327668662370341!NR3C1#2908;2:9.98201555411536:0.0127847436554717:0.0460788157032753!SMARCB1#6598;2:12.1684771874383:0.00867500222192174:0.0330129921678795
|tfbs_overrepresentation=2.36262e-05,0.00175569,0.00948065,0.0477154,0.199763,0.000422139,0.0430074,0.0172144,0.03272,0.0257057,0.139423,0.00229455,0.188771,0.00829112,0.148679,0.0619003,0.010441,0.000170365,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.0250931,0.209392,0.0907212,0.0108656,0.00450133,4.37092e-06,8.1328e-06,0.0180314,0.0233668,0.00226357,0.0844722,2.89404e-18,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.0102981,0.0180778,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.00446469,0.0212153,0.0384161,0.107455,0.00011266,0.0783235,0.105572,0.0294301,0.000625972,0.108602,0.0759481,0.054569,0.0504887,0.0709764,0.0600088,0.0860723,0.0148026,2.26661e-09,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,1.43744e-05,0.000702541,0.00725252,0.0956287,0.226912,0.000916199,0.00686288,0.0472875,6.46419e-07,0.00211576,0.0235519,6.2605e-08,0.062747,0.0857568,0.0495878,7.75986e-08,0.00114029,0.0853887,0.115028,0.00212123,0.000682869,0.0927458,0.0415725,0.0574857,0.00442705,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.00862108,6.70711e-07,1.95373e-05,5.86349e-05,0.0339971,0.000627743,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.00361707,0.16671,0.00196532,0.140123,0.0857827,0.00542817,0.176912,0.00424238,0.0147934,0.00366285,0.00954291,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,5.12341e-06,5.85505e-05,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.0108547,0.180712,0.0265818,0.000925287,8.50619e-11,0.0747594,0.228385,0.0516985,0.0337251,0.000151223,0.0952829,0.116642,0.0115024,0.273479,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.0172085,0.00995227,0.0255071,0.0014925,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.0133424,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.000101127,0.173562,0.000222889,0.0187509,0.122935,0.0284396,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.00624688,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.037005,0.0413967,0.0121616,0.206299,2.07093e-06,0.0458667,0.104357,0.121154,0.00662754,0.0549274,0.0151713,0.0142864,0.100942,0.062995,0.10299,0.14193,0.37245,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.059896,1.24275e-10,0.00157828,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,2.33993e-10,2.33954e-06,5.49718e-14,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.000253111,0.0119747,0.117027,0.00076121,0.0183114,0.01843,0.0980288,0.0980899,0.159674,0.00596775,0.201859,0.0024791,3.87374e-06,0.0619218,8.41031e-13,0.000828043,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,7.60799e-05,0.00453939,0.063292,0.0356268,8.51121e-10,0.0865903,0.0380459,0.000407334,0.219944,0.0381789,0.00485874,0.019623,0.20128,8.37562e-05,2.90922e-10,0.00083951,0.0185583,0.261553,0.0222487,0.373681,0.309233,0.49143,0.330703,0.000178425,0.00791734,0.00116194,6.32807e-05,0.271958,0.00531795,1.30444e-06,0.00183273,0.000290219,0.00244849,0.0187414,0.362792,0.181715,0.10624,0.00628346,6.25505e-05,0.0257868,2.02913e-06,0.376924,0.025356,0.000107655,0.173877,1.10832e-06,0.370782,1.60482e-06,0.000615629,0.0352744,0.000355279,0.301787,0.481778,0.00695027,0.0270783,8.85251e-06,5.12277e-05,0.283727,0.000629694,0.0116619,0.000448164,0.120054,0.00192508,2.15615e-05,0.292835,0.137839,0.0210941,0.373868,0.00194724,0.241757,0.18237,4.27123e-05,4.6495e-09,2.5795e-11,0.275351,0.00267743,0.185661,0.000971103,0.535598,0.00032333,0.0179843,0.155555,0.0367769,1.24796e-05,0.248634,0.281576,0.00419907,0.0141151,0.0670502,0.0730934,0.184794,0.0138549,0.00365572,0.0583074,0.412837,0.102184,0.188159,0.0477082,0.0225539,0.218623,4.53568e-05,0.032738,0.0451077,0.00286634,0.0284893,0.00449125,3.83513e-08,5.75666e-08,0.0484563,0.0671437,3.13444e-08,1.27656e-10,3.82836e-06,2.73928e-05,0.278044,0.00692297,0.000288232,0.0282539,0.336314,0.19763,0.0129079,2.87559e-06,0.00242214,0.00466824,0.104399,0.516462,4.35628e-14,0.335105,0.144809,0.145539,0.0134194,6.85269e-07,3.05133e-06,0.00368553,0.252232,0.152681,0.0465712,0.137098,0.0369524,0.134788,0.0985856,0.546222,0.293698,0.284593,5.41182e-06,0.306556,0.00617767,0.06617,0.0340602,0.00100376,0.284629,0.000281257,0.010587,0.00232369,0.016014,0.000244065,0.363685,0.0256829,0.00320894,0.0228979,0.00713629,0.651524,0.113671,0.269226,0.339277,0.0479524,0.281425,0.141758,0.124432,0.000117126,0.159617,0.00275523,0.000124053,0.0293409,0.00132186,0.0891382,0.0595618,0.0397695,0.0033863,0.00943126,0.182325,0.34988,0.475069,0.0958562,0.0847452,1.08007e-06,0.0562865,0.0697683,0.0556835,0.192544,0.0779981,0.00168976,2.17134e-05,0.223391,1.59413e-07,0.00307017,2.73054e-06,0.0196924,0.111931,0.046606,0.0435386,0.303336,0.126478,0.000454603,0.00592795,0.0413156,0.0627924,4.58666e-08,0.0179103,0.303939,0.0434097,0.390395,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.000397518,0.00184145,0.193675,0.346372,0.0499762,0.0828956,8.95002e-07,0.0177068,0.00643465,0.026047,4.31765e-06,0.0205132,0.132201,6.7436e-05,0.0481795,3.82697e-06,2.52657e-10,0.127758,0.0164446,0.184486,4.24693e-05,0.0876426,0.0046858,0.0112557,0.00220026,0.00594521,0.275244,0.00481323,4.74341e-05,0.141119,0.000110141,0.0300692,0.131551,0.00100623,0.052362,0.00179985,0.0123828,0.0797897,0.0974211,0.0135691,0.000346156,0.00423858,0.0558058,6.62194e-08,1.34696e-12,0.137332,0.0145999,0.0656973,0.00188014,0.026334,0.0801488,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,6.01785e-07,0.0330727,0.348757,2.60723e-07,0.0394698,0.0596469,0.103658,1.09383e-05,0.108872,0.00628729,8.30376e-07,0.0286025,2.2805e-13,2.18687e-05,0.038848,0.0874516,0.0550279,0.0109154,0.253693,0.217069,2.90989e-06,0.131088,0.0144628,0.000180174,0.00501606,0.0761239,0.0158143,0.00344747,0.00117737,1.3276e-08,0.000603748,0.141463,0.167267,0.0103864,0.0889592,4.27652e-05,0.0458479,0.0473033,0.094881,2.94436e-06,0.00924871,0.0774373,0.00619136,0.128564,0.131452,3.77923e-06,3.73213e-05,0.051838,0.00511251,0.0500365,0.061829,0.0755121,0.00452901,0.144075,0.0340203,0.0741807,0.000356768,2.14117e-08,0.0926491,0.21727,0.289306,9.77694e-06,7.33943e-05,0.177967,9.55576e-10,0.057571,0.047591,0.0899568,0.0608699,0.175319,1.08448e-07,0.0713214,0.223874,0.0472142,0.0355833,0.00824114,0.175094,1.30989e-10,9.6056e-10,0.206454,0.0257531,6.55828e-06,0.0673484,0.108748,0.00124112,0.000158113,0.205732,0.0755808,0.045654,0.110216,0.070276,0.000146823,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.00446076,0.0158019,0.104948,0.221645,0.057168,0.0298844,0.0759837,3.13608e-09,8.96704e-07,0.00144552,8.78526e-09,0.101607,0.000748789,0.172982,0.000904138,0.151597,0.0626744,0.191335,0.148574,8.47895e-13,0.155821,0.0718905,0.0919008,0.0602373,0.144304,0.000642001,0.0973823,2.93332e-05,0.170295,0.0200941,0.137219,0.0282663,0.0346616,2.84797e-05,9.71384e-06,0.00362128,6.31571e-05,0.00665699,0.00659775,0.186638,0.174776,0.0948451,0.000288589,0.00316392,0.000516956,0.0997756,3.89168e-11,0.103667,0.113069,0.025556,4.10812e-05,0.09066,0.0597157,0.166967,0.0013029,2.02228e-06,0.184948,0.000720136,0.311847,5.17607e-09,0.0590944,8.18455e-10,0.178389,0.0257622,0.00248603,5.40341e-13,1.87947e-13,0.0360851,0.000227331,0.131093,0.000958383,0.00935312,0.0177337,0.0785808,0.120614,0.407369,0.0291288,1.87029e-05,0.115047,0.37006,0.42622,0.120472,0.197484,0.0148336,0.36145,0.00202987,0.0841307,0.000284936,0.276075,0.11074,0.366326,0.390366,0.0049331,7.24323e-07,0.0217093,0.522904,0.0199034,1.00637e-13,0.227104,1.05906e-06,0.0167433,0.000154756,0.284625,8.52869e-13,0.04783,0.000415039,1.63668e-06,0.164197,0.00379441,0.287881,3.31949e-06,0.000566617,4.64145e-06,0.132529,0.258219,0.446557,0.243383,5.59455e-07,1.35282e-05,0.000456298,4.06194e-08,0.161598,0.000101989,1.42018e-08,0.496032,4.65435e-05,0.0013757,6.9989e-07,0.0282154,3.25586e-05,2.67609e-08,5.84732e-08,0.20342,0.200493,0.20558,0.300504,0.0361545,0.0189087,0.0696455,0.383291,0.156104,0.141318,0.411941,0.00477789,0.314438,0.0720718,0.163828,0.230581,0.120226,0.28424,0.562405,0.314429,0.181415,0.282286,0.000180531,7.55159e-06,0.0978616,0.516511,0.0586066,0.00480191,0.33942,0.000436901,0.0871388,0.0391112,1.15611e-06,0.537348,0.222037,0.416621,0.416292,0.462712,1.39925e-06,0.0019893,0.204817,0.0233392,0.138871,1.45533e-12,0.166905,0.19783,0.0833851,0.00691922,0.00457272,0.0163316,0.000811439,0.373557,0.000122849,1.31242e-11,8.3468e-06,0.534741,0.000165487,0.363192,0.236011,0.203486,0.273398,0.375787,0.4466,0.351067,0.0419637,0.019895,0.305885,0.241132,0.371414,0.0527347,0.303709,0.495883,0.386538,0.508064,0.250964,0.0851927,0.0243456,0.504711,0.220231,0.509064,0.196976,0.019637,0.000467747,0.0663581,0.0529819,0.127092,0.283463,0.0102434,0.135386,0.00188259,0.273281,0.368095,0.275089,0.0858306,0.0283414,0.000100654,0.339729,0.197805,0.608187,0.387069,0.00817676,0.173874,0.299887,0.634365,0.205413,0.17639,0.0779009,0.00446098,4.41089e-06,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.0146333,0.252184,0.0828367,0.255516,0.20753,0.447185,0.179412,0.193601,0.220904,0.0269454,0.0664606,0.000593893,0.21801,0.0211771,0.186804,0.123324,0.0213665,0.0325925,0.000145586,0.12405,0.0172483,0.0023439,0.27872,0.0855609,0.131118,0.00178627,0.0335483,0.000136363,0.0673329,0.20847,0.266544,0.113092,0.145701,0.00242972,0.162145,0.0284767,0.0151141,0.0384949,0.0660995,0.00138668,0.0010536,0.268741,0.201602,0.00972162,0.154941,0.120196,0.00503675,0.108462,0.0595618,0.21593,0.158479,0.0262794,0.195218,0.00805527,0.259632,0.0532009,0.180606,0.159884,0.257294,0.150733,0.0254879,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,4.23749e-06,0.00193951,0.0232077,0.141867,0.193031,0.249101,0.00700099,0.224568,0.246105,0.0159159,8.72774e-05,0.0102599,0.197112,0.240478,0.156465,0.13108,0.256963,0.222798,0.172134,0.176789,0.0969345,0.0219648,0.310405,0.280943,0.218161,0.0822373,0.202065,0.000220289,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.261724,0.00186843,0.187731,0.233626,0.189559,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.000980315,0.141729,0.263159,0.255956,0.200105,0.227491,0.29837,0.000241242,0.177664,0.28365,0.264413,0.131761,0.0136582,0.206239,0.0213159,0.28689,0.00267717,0.325148,0.115817,0.218052,0.223831,0.11528,0.194982,0.190993,0.281727,0.283218,0.249955,0.164638,0.224257,0.0935776,0.327622,0.225752,0.000101879,0.0958756,0.0859274,0.316866,0.171683,0.158847,0.271275,0.071111,0.0404514,0.101021,0.222548,0.175934,0.157274,0.0251447,0.252796,0.205954,0.361435
|tfbs_overrepresentation=2.36262e-05,0.00175569,0.00948065,0.0477154,0.199763,0.000422139,0.0430074,0.0172144,0.03272,0.0257057,0.139423,0.00229455,0.188771,0.00829112,0.148679,0.0619003,0.010441,0.000170365,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.0250931,0.209392,0.0907212,0.0108656,0.00450133,4.37092e-06,8.1328e-06,0.0180314,0.0233668,0.00226357,0.0844722,2.89404e-18,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.0102981,0.0180778,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.00446469,0.0212153,0.0384161,0.107455,0.00011266,0.0783235,0.105572,0.0294301,0.000625972,0.108602,0.0759481,0.054569,0.0504887,0.0709764,0.0600088,0.0860723,0.0148026,2.26661e-09,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,1.43744e-05,0.000702541,0.00725252,0.0956287,0.226912,0.000916199,0.00686288,0.0472875,6.46419e-07,0.00211576,0.0235519,6.2605e-08,0.062747,0.0857568,0.0495878,7.75986e-08,0.00114029,0.0853887,0.115028,0.00212123,0.000682869,0.0927458,0.0415725,0.0574857,0.00442705,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.00862108,6.70711e-07,1.95373e-05,5.86349e-05,0.0339971,0.000627743,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.00361707,0.16671,0.00196532,0.140123,0.0857827,0.00542817,0.176912,0.00424238,0.0147934,0.00366285,0.00954291,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,5.12341e-06,5.85505e-05,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.0108547,0.180712,0.0265818,0.000925287,8.50619e-11,0.0747594,0.228385,0.0516985,0.0337251,0.000151223,0.0952829,0.116642,0.0115024,0.273479,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.0172085,0.00995227,0.0255071,0.0014925,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.0133424,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.000101127,0.173562,0.000222889,0.0187509,0.122935,0.0284396,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.00624688,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.037005,0.0413967,0.0121616,0.206299,2.07093e-06,0.0458667,0.104357,0.121154,0.00662754,0.0549274,0.0151713,0.0142864,0.100942,0.062995,0.10299,0.14193,0.37245,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.059896,1.24275e-10,0.00157828,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,2.33993e-10,2.33954e-06,5.49718e-14,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.000253111,0.0119747,0.117027,0.00076121,0.0183114,0.01843,0.0980288,0.0980899,0.159674,0.00596775,0.201859,0.0024791,3.87374e-06,0.0619218,8.41031e-13,0.000828043,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,7.60799e-05,0.00453939,0.063292,0.0356268,8.51121e-10,0.0865903,0.0380459,0.000407334,0.219944,0.0381789,0.00485874,0.019623,0.20128,8.37562e-05,2.90922e-10,0.00083951,0.0185583,0.261553,0.0222487,0.373681,0.309233,0.49143,0.330703,0.000178425,0.00791734,0.00116194,6.32807e-05,0.271958,0.00531795,1.30444e-06,0.00183273,0.000290219,0.00244849,0.0187414,0.362792,0.181715,0.10624,0.00628346,6.25505e-05,0.0257868,2.02913e-06,0.376924,0.025356,0.000107655,0.173877,1.10832e-06,0.370782,1.60482e-06,0.000615629,0.0352744,0.000355279,0.301787,0.481778,0.00695027,0.0270783,8.85251e-06,5.12277e-05,0.283727,0.000629694,0.0116619,0.000448164,0.120054,0.00192508,2.15615e-05,0.292835,0.137839,0.0210941,0.373868,0.00194724,0.241757,0.18237,4.27123e-05,4.6495e-09,2.5795e-11,0.275351,0.00267743,0.185661,0.000971103,0.535598,0.00032333,0.0179843,0.155555,0.0367769,1.24796e-05,0.248634,0.281576,0.00419907,0.0141151,0.0670502,0.0730934,0.184794,0.0138549,0.00365572,0.0583074,0.412837,0.102184,0.188159,0.0477082,0.0225539,0.218623,4.53568e-05,0.032738,0.0451077,0.00286634,0.0284893,0.00449125,3.83513e-08,5.75666e-08,0.0484563,0.0671437,3.13444e-08,1.27656e-10,3.82836e-06,2.73928e-05,0.278044,0.00692297,0.000288232,0.0282539,0.336314,0.19763,0.0129079,2.87559e-06,0.00242214,0.00466824,0.104399,0.516462,4.35628e-14,0.335105,0.144809,0.145539,0.0134194,6.85269e-07,3.05133e-06,0.00368553,0.252232,0.152681,0.0465712,0.137098,0.0369524,0.134788,0.0985856,0.546222,0.293698,0.284593,5.41182e-06,0.306556,0.00617767,0.06617,0.0340602,0.00100376,0.284629,0.000281257,0.010587,0.00232369,0.016014,0.000244065,0.363685,0.0256829,0.00320894,0.0228979,0.00713629,0.651524,0.113671,0.269226,0.339277,0.0479524,0.281425,0.141758,0.124432,0.000117126,0.159617,0.00275523,0.000124053,0.0293409,0.00132186,0.0891382,0.0595618,0.0397695,0.0033863,0.00943126,0.182325,0.34988,0.475069,0.0958562,0.0847452,1.08007e-06,0.0562865,0.0697683,0.0556835,0.192544,0.0779981,0.00168976,2.17134e-05,0.223391,1.59413e-07,0.00307017,2.73054e-06,0.0196924,0.111931,0.046606,0.0435386,0.303336,0.126478,0.000454603,0.00592795,0.0413156,0.0627924,4.58666e-08,0.0179103,0.303939,0.0434097,0.390395,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.000397518,0.00184145,0.193675,0.346372,0.0499762,0.0828956,8.95002e-07,0.0177068,0.00643465,0.026047,4.31765e-06,0.0205132,0.132201,6.7436e-05,0.0481795,3.82697e-06,2.52657e-10,0.127758,0.0164446,0.184486,4.24693e-05,0.0876426,0.0046858,0.0112557,0.00220026,0.00594521,0.275244,0.00481323,4.74341e-05,0.141119,0.000110141,0.0300692,0.131551,0.00100623,0.052362,0.00179985,0.0123828,0.0797897,0.0974211,0.0135691,0.000346156,0.00423858,0.0558058,6.62194e-08,1.34696e-12,0.137332,0.0145999,0.0656973,0.00188014,0.026334,0.0801488,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,6.01785e-07,0.0330727,0.348757,2.60723e-07,0.0394698,0.0596469,0.103658,1.09383e-05,0.108872,0.00628729,8.30376e-07,0.0286025,2.2805e-13,2.18687e-05,0.038848,0.0874516,0.0550279,0.0109154,0.253693,0.217069,2.90989e-06,0.131088,0.0144628,0.000180174,0.00501606,0.0761239,0.0158143,0.00344747,0.00117737,1.3276e-08,0.000603748,0.141463,0.167267,0.0103864,0.0889592,4.27652e-05,0.0458479,0.0473033,0.094881,2.94436e-06,0.00924871,0.0774373,0.00619136,0.128564,0.131452,3.77923e-06,3.73213e-05,0.051838,0.00511251,0.0500365,0.061829,0.0755121,0.00452901,0.144075,0.0340203,0.0741807,0.000356768,2.14117e-08,0.0926491,0.21727,0.289306,9.77694e-06,7.33943e-05,0.177967,9.55576e-10,0.057571,0.047591,0.0899568,0.0608699,0.175319,1.08448e-07,0.0713214,0.223874,0.0472142,0.0355833,0.00824114,0.175094,1.30989e-10,9.6056e-10,0.206454,0.0257531,6.55828e-06,0.0673484,0.108748,0.00124112,0.000158113,0.205732,0.0755808,0.045654,0.110216,0.070276,0.000146823,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.00446076,0.0158019,0.104948,0.221645,0.057168,0.0298844,0.0759837,3.13608e-09,8.96704e-07,0.00144552,8.78526e-09,0.101607,0.000748789,0.172982,0.000904138,0.151597,0.0626744,0.191335,0.148574,8.47895e-13,0.155821,0.0718905,0.0919008,0.0602373,0.144304,0.000642001,0.0973823,2.93332e-05,0.170295,0.0200941,0.137219,0.0282663,0.0346616,2.84797e-05,9.71384e-06,0.00362128,6.31571e-05,0.00665699,0.00659775,0.186638,0.174776,0.0948451,0.000288589,0.00316392,0.000516956,0.0997756,3.89168e-11,0.103667,0.113069,0.025556,4.10812e-05,0.09066,0.0597157,0.166967,0.0013029,2.02228e-06,0.184948,0.000720136,0.311847,5.17607e-09,0.0590944,8.18455e-10,0.178389,0.0257622,0.00248603,5.40341e-13,1.87947e-13,0.0360851,0.000227331,0.131093,0.000958383,0.00935312,0.0177337,0.0785808,0.120614,0.407369,0.0291288,1.87029e-05,0.115047,0.37006,0.42622,0.120472,0.197484,0.0148336,0.36145,0.00202987,0.0841307,0.000284936,0.276075,0.11074,0.366326,0.390366,0.0049331,7.24323e-07,0.0217093,0.522904,0.0199034,1.00637e-13,0.227104,1.05906e-06,0.0167433,0.000154756,0.284625,8.52869e-13,0.04783,0.000415039,1.63668e-06,0.164197,0.00379441,0.287881,3.31949e-06,0.000566617,4.64145e-06,0.132529,0.258219,0.446557,0.243383,5.59455e-07,1.35282e-05,0.000456298,4.06194e-08,0.161598,0.000101989,1.42018e-08,0.496032,4.65435e-05,0.0013757,6.9989e-07,0.0282154,3.25586e-05,2.67609e-08,5.84732e-08,0.20342,0.200493,0.20558,0.300504,0.0361545,0.0189087,0.0696455,0.383291,0.156104,0.141318,0.411941,0.00477789,0.314438,0.0720718,0.163828,0.230581,0.120226,0.28424,0.562405,0.314429,0.181415,0.282286,0.000180531,7.55159e-06,0.0978616,0.516511,0.0586066,0.00480191,0.33942,0.000436901,0.0871388,0.0391112,1.15611e-06,0.537348,0.222037,0.416621,0.416292,0.462712,1.39925e-06,0.0019893,0.204817,0.0233392,0.138871,1.45533e-12,0.166905,0.19783,0.0833851,0.00691922,0.00457272,0.0163316,0.000811439,0.373557,0.000122849,1.31242e-11,8.3468e-06,0.534741,0.000165487,0.363192,0.236011,0.203486,0.273398,0.375787,0.4466,0.351067,0.0419637,0.019895,0.305885,0.241132,0.371414,0.0527347,0.303709,0.495883,0.386538,0.508064,0.250964,0.0851927,0.0243456,0.504711,0.220231,0.509064,0.196976,0.019637,0.000467747,0.0663581,0.0529819,0.127092,0.283463,0.0102434,0.135386,0.00188259,0.273281,0.368095,0.275089,0.0858306,0.0283414,0.000100654,0.339729,0.197805,0.608187,0.387069,0.00817676,0.173874,0.299887,0.634365,0.205413,0.17639,0.0779009,0.00446098,4.41089e-06,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.0146333,0.252184,0.0828367,0.255516,0.20753,0.447185,0.179412,0.193601,0.220904,0.0269454,0.0664606,0.000593893,0.21801,0.0211771,0.186804,0.123324,0.0213665,0.0325925,0.000145586,0.12405,0.0172483,0.0023439,0.27872,0.0855609,0.131118,0.00178627,0.0335483,0.000136363,0.0673329,0.20847,0.266544,0.113092,0.145701,0.00242972,0.162145,0.0284767,0.0151141,0.0384949,0.0660995,0.00138668,0.0010536,0.268741,0.201602,0.00972162,0.154941,0.120196,0.00503675,0.108462,0.0595618,0.21593,0.158479,0.0262794,0.195218,0.00805527,0.259632,0.0532009,0.180606,0.159884,0.257294,0.150733,0.0254879,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,4.23749e-06,0.00193951,0.0232077,0.141867,0.193031,0.249101,0.00700099,0.224568,0.246105,0.0159159,8.72774e-05,0.0102599,0.197112,0.240478,0.156465,0.13108,0.256963,0.222798,0.172134,0.176789,0.0969345,0.0219648,0.310405,0.280943,0.218161,0.0822373,0.202065,0.000220289,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.261724,0.00186843,0.187731,0.233626,0.189559,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.000980315,0.141729,0.263159,0.255956,0.200105,0.227491,0.29837,0.000241242,0.177664,0.28365,0.264413,0.131761,0.0136582,0.206239,0.0213159,0.28689,0.00267717,0.325148,0.115817,0.218052,0.223831,0.11528,0.194982,0.190993,0.281727,0.283218,0.249955,0.164638,0.224257,0.0935776,0.327622,0.225752,0.000101879,0.0958756,0.0859274,0.316866,0.171683,0.158847,0.271275,0.071111,0.0404514,0.101021,0.222548,0.175934,0.157274,0.0251447,0.252796,0.205954,0.361435
}}
}}

Revision as of 16:09, 19 October 2012


Full id: C4682_small_cervix_uterus_prostate_Smooth_Prostate_smooth



Phase1 CAGE Peaks

Hg19::chr7:27238977..27238982,-p@chr7:27238977..27238982
-
Hg19::chr7:27239703..27239715,-p1@HOXA13
Hg19::chr7:27239740..27239759,-p2@HOXA13


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen
prostate stromal cell4.10e-073
Uber Anatomy
Ontology termp-valuen
hindgut2.15e-1719
larynx6.68e-169
cloaca2.05e-1514
anal region2.05e-1514
embryonic cloaca2.05e-1514
terminal part of digestive tract2.05e-1514
primitive urogenital sinus2.05e-1514
proctodeum2.05e-1514
sex gland4.36e-1512
male reproductive gland4.36e-1512
genitourinary system3.50e-1415
prostate gland2.05e-1311
male accessory sex gland2.05e-1311
embryonic cloacal epithelium2.05e-1311
epithelium of hindgut2.05e-1311
urogenital sinus epithelium2.05e-1311
prostate bud2.05e-1311
prostate field2.05e-1311
reproductive structure4.80e-1259
reproductive system4.80e-1259
male organism5.68e-1222
male reproductive system5.68e-1222
renal system1.55e-1048
internal genitalia5.51e-1025
subdivision of digestive tract9.09e-10118
large intestine1.19e-0911
urinary system structure1.40e-0947
intermediate mesoderm4.60e-0928
embryonic uterus2.86e-0822
endoderm-derived structure3.41e-08160
endoderm3.41e-08160
presumptive endoderm3.41e-08160
internal female genitalia3.44e-0822
mixed endoderm/mesoderm-derived structure2.73e-0729
uterus4.57e-0721
digestive system6.60e-07145
digestive tract6.60e-07145
primitive gut6.60e-07145
colon7.68e-079
Disease
Ontology termp-valuen
carcinoma3.04e-09106
disease of cellular proliferation1.39e-08239
cancer2.31e-07235
cell type cancer7.04e-07143


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
E2F1#186934.907389214879320.008460985347239390.0327668662370341
NR3C1#290829.982015554115360.01278474365547170.0460788157032753
SMARCB1#6598212.16847718743830.008675002221921740.0330129921678795



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


This analysis result is provided for C0 - C305 clusters.