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{{Coexpression_clusters
 
{{Coexpression_clusters
 
|full_id=C529_testis_temporal_amygdala_occipital_insula_brain_putamen
 
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|gostat_on_coexpression_clusters=GO:0006167!AMP biosynthetic process!0.0180732803962082!159$GO:0033391!chromatoid body!0.0180732803962082!29118$GO:0046033!AMP metabolic process!0.0180732803962082!159$GO:0004572!mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity!0.0180732803962082!4122$GO:0004019!adenylosuccinate synthase activity!0.0180732803962082!159$GO:0007141!male meiosis I!0.0180732803962082!8900$GO:0005737!cytoplasm!0.0180732803962082!159;4122;8799;22927;29118;8900$GO:0007283!spermatogenesis!0.0180732803962082!29118;8900$GO:0048232!male gamete generation!0.0180732803962082!29118;8900$GO:0007276!gamete generation!0.022917850838468!29118;8900$GO:0016559!peroxisome fission!0.022917850838468!8799$GO:0007140!male meiosis!0.0245072039266199!8900$GO:0048285!organelle fission!0.0254315348049321!8799$GO:0019953!sexual reproduction!0.0254315348049321!29118;8900$GO:0004559!alpha-mannosidase activity!0.0280008139512107!4122$GO:0006013!mannose metabolic process!0.0373146430493189!4122$GO:0005779!integral to peroxisomal membrane!0.0373146430493189!8799$GO:0031231!intrinsic to peroxisomal membrane!0.0373146430493189!8799$GO:0004004!ATP-dependent RNA helicase activity!0.0374514524468862!29118$GO:0006406!mRNA export from nucleus!0.0374514524468862!29118$GO:0008186!RNA-dependent ATPase activity!0.0374514524468862!29118$GO:0007286!spermatid development!0.0374514524468862!29118$GO:0015924!mannosyl-oligosaccharide mannosidase activity!0.0374514524468862!4122$GO:0009167!purine ribonucleoside monophosphate metabolic process!0.0374514524468862!159$GO:0048515!spermatid differentiation!0.0374514524468862!29118$GO:0009168!purine ribonucleoside monophosphate biosynthetic process!0.0374514524468862!159$GO:0009127!purine nucleoside monophosphate biosynthetic process!0.0374514524468862!159$GO:0009126!purine nucleoside monophosphate metabolic process!0.0374514524468862!159$GO:0007031!peroxisome organization and biogenesis!0.0405746259930195!8799$GO:0006405!RNA export from nucleus!0.0405746259930195!29118$GO:0003724!RNA helicase activity!0.0405746259930195!29118$GO:0009161!ribonucleoside monophosphate metabolic process!0.0419160099579801!159$GO:0009156!ribonucleoside monophosphate biosynthetic process!0.0419160099579801!159$GO:0015923!mannosidase activity!0.0431412155542507!4122$GO:0009124!nucleoside monophosphate biosynthetic process!0.0442251507911105!159$GO:0009123!nucleoside monophosphate metabolic process!0.0442251507911105!159$GO:0051168!nuclear export!0.0479907101573285!29118$GO:0031903!microbody membrane!0.0479907101573285!8799$GO:0005778!peroxisomal membrane!0.0479907101573285!8799$GO:0044439!peroxisomal part!0.0479907101573285!8799$GO:0044438!microbody part!0.0479907101573285!8799$GO:0000079!regulation of cyclin-dependent protein kinase activity!0.0488329871421061!8900
 
|id=C529
 
|id=C529
 
}}
 
}}

Revision as of 08:40, 18 May 2012


Full id: C529_testis_temporal_amygdala_occipital_insula_brain_putamen



Phase1 CAGE Peaks

  Short description
Hg19::chr11:125774362..125774414,+ p1@DDX25
Hg19::chr12:124457511..124457524,- p6@CCDC92
Hg19::chr12:124457526..124457542,- p7@CCDC92
Hg19::chr12:124457547..124457562,- p8@CCDC92
Hg19::chr12:31882027..31882048,- p3@AMN1
Hg19::chr13:37006421..37006487,+ p2@CCNA1
Hg19::chr13:50510622..50510649,- p4@SPRYD7
Hg19::chr14:105940901..105940956,+ p2@CRIP2
Hg19::chr15:91446123..91446133,+ p14@MAN2A2
Hg19::chr15:91446139..91446156,+ p11@MAN2A2
Hg19::chr1:145516574..145516603,+ p2@PEX11B
Hg19::chr1:244615425..244615441,- p9@ADSS
Hg19::chr6:43478068..43478103,- p1@LRRC73
Hg19::chr9:90589429..90589488,- p1@CDK20
Hg19::chr9:99212366..99212385,+ p2@HABP4
Hg19::chrX:71289516..71289537,+ p@chrX:71289516..71289537
+


Enriched pathways on this co-expression clusterSummary:
Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.
Analyst: Emmanuel Dimont

link to source dataset
data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression clusterSummary: Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter.
Analyst: Erik Arner

link to source dataset
data


GO IDGO nameFDR corrected p-value
GO:0006167AMP biosynthetic process0.0180732803962082
GO:0033391chromatoid body0.0180732803962082
GO:0046033AMP metabolic process0.0180732803962082
GO:0004572mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity0.0180732803962082
GO:0004019adenylosuccinate synthase activity0.0180732803962082
GO:0007141male meiosis I0.0180732803962082
GO:0005737cytoplasm0.0180732803962082
GO:0007283spermatogenesis0.0180732803962082
GO:0048232male gamete generation0.0180732803962082
GO:0007276gamete generation0.022917850838468
GO:0016559peroxisome fission0.022917850838468
GO:0007140male meiosis0.0245072039266199
GO:0048285organelle fission0.0254315348049321
GO:0019953sexual reproduction0.0254315348049321
GO:0004559alpha-mannosidase activity0.0280008139512107
GO:0006013mannose metabolic process0.0373146430493189
GO:0005779integral to peroxisomal membrane0.0373146430493189
GO:0031231intrinsic to peroxisomal membrane0.0373146430493189
GO:0004004ATP-dependent RNA helicase activity0.0374514524468862
GO:0006406mRNA export from nucleus0.0374514524468862
GO:0008186RNA-dependent ATPase activity0.0374514524468862
GO:0007286spermatid development0.0374514524468862
GO:0015924mannosyl-oligosaccharide mannosidase activity0.0374514524468862
GO:0009167purine ribonucleoside monophosphate metabolic process0.0374514524468862
GO:0048515spermatid differentiation0.0374514524468862
GO:0009168purine ribonucleoside monophosphate biosynthetic process0.0374514524468862
GO:0009127purine nucleoside monophosphate biosynthetic process0.0374514524468862
GO:0009126purine nucleoside monophosphate metabolic process0.0374514524468862
GO:0007031peroxisome organization and biogenesis0.0405746259930195
GO:0006405RNA export from nucleus0.0405746259930195
GO:0003724RNA helicase activity0.0405746259930195
GO:0009161ribonucleoside monophosphate metabolic process0.0419160099579801
GO:0009156ribonucleoside monophosphate biosynthetic process0.0419160099579801
GO:0015923mannosidase activity0.0431412155542507
GO:0009124nucleoside monophosphate biosynthetic process0.0442251507911105
GO:0009123nucleoside monophosphate metabolic process0.0442251507911105
GO:0051168nuclear export0.0479907101573285
GO:0031903microbody membrane0.0479907101573285
GO:0005778peroxisomal membrane0.0479907101573285
GO:0044439peroxisomal part0.0479907101573285
GO:0044438microbody part0.0479907101573285
GO:0000079regulation of cyclin-dependent protein kinase activity0.0488329871421061



Enriched sample ontology terms on this co-expression clusterSummary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji

links to source dataset

cell_data
uberon_data
disease_data


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression clusterSummary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon

link to source data
Novel motifs
data

Jaspar motifs
data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysisSummary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained.
Analyst: Erik Arner

link to source dataset

data


No analysis results for this cluster

Relative expression of the co-expression clusterSummary:Co-expression clusters are compared against FANTOM5 samples to obtain relative expression.
Analyst:NA

link to data source
data


This analysis result is provided for C0 - C305 clusters.