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Coexpression cluster:C56

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Full id: C56_heart_left_umbilical_skeletal_penis_diaphragm_tongue



Phase1 CAGE Peaks

Hg19::chr10:112403631..112403640,+p@chr10:112403631..112403640
+
Hg19::chr10:112404196..112404221,+p1@RBM20
Hg19::chr10:112524504..112524524,+p@chr10:112524504..112524524
+
Hg19::chr10:112524543..112524547,+p@chr10:112524543..112524547
+
Hg19::chr10:126366769..126366776,-p@chr10:126366769..126366776
-
Hg19::chr10:131073294..131073315,-p@chr10:131073294..131073315
-
Hg19::chr10:18629608..18629619,+p17@CACNB2
Hg19::chr10:18629628..18629672,+p4@CACNB2
Hg19::chr10:18629675..18629715,+p7@CACNB2
Hg19::chr10:18629730..18629743,+p21@CACNB2
Hg19::chr10:18629750..18629762,+p13@CACNB2
Hg19::chr10:29923855..29923866,-p9@SVIL
Hg19::chr10:35032687..35032696,-p@chr10:35032687..35032696
-
Hg19::chr10:35032749..35032756,-p@chr10:35032749..35032756
-
Hg19::chr10:62060259..62060269,-p23@ANK3
Hg19::chr10:69455873..69455960,-p2@CTNNA3
Hg19::chr10:69455965..69455974,-p6@CTNNA3
Hg19::chr10:75410771..75410813,-p2@SYNPO2L
Hg19::chr10:94266253..94266263,-p15@IDE
Hg19::chr10:95153091..95153099,-p@chr10:95153091..95153099
-
Hg19::chr10:95153120..95153134,-p@chr10:95153120..95153134
-
Hg19::chr10:97174606..97174621,-p@chr10:97174606..97174621
-
Hg19::chr10:97174646..97174659,-p@chr10:97174646..97174659
-
Hg19::chr10:97182321..97182331,-p38@SORBS1
Hg19::chr10:97182338..97182349,-p@chr10:97182338..97182349
-
Hg19::chr10:98157764..98157766,-p@chr10:98157764..98157766
-
Hg19::chr11:104279650..104279689,+p@chr11:104279650..104279689
+
Hg19::chr11:111781514..111781529,-p18@CRYAB
Hg19::chr11:111781562..111781581,-p22@CRYAB
Hg19::chr11:134046302..134046323,-p@chr11:134046302..134046323
-
Hg19::chr11:16878864..16878873,-p@chr11:16878864..16878873
-
Hg19::chr11:16878883..16878894,-p@chr11:16878883..16878894
-
Hg19::chr11:19231405..19231414,+p@chr11:19231405..19231414
+
Hg19::chr11:2396596..2396607,-p@chr11:2396596..2396607
-
Hg19::chr11:2396614..2396636,-p@chr11:2396614..2396636
-
Hg19::chr11:2936013..2936024,+p@chr11:2936013..2936024
+
Hg19::chr12:114841717..114841726,-p15@TBX5
Hg19::chr12:114843816..114843832,-p4@TBX5
Hg19::chr12:117491808..117491811,-p6@TESC
Hg19::chr12:20262765..20262784,-p@chr12:20262765..20262784
-
Hg19::chr12:20262813..20262826,-p@chr12:20262813..20262826
-
Hg19::chr12:20262830..20262855,-p@chr12:20262830..20262855
-
Hg19::chr12:2079939..2079959,+p2@CACNA1C
Hg19::chr12:2079960..2079967,+p13@CACNA1C
Hg19::chr12:2079975..2079994,+p6@CACNA1C
Hg19::chr12:3157341..3157355,+p@chr12:3157341..3157355
+
Hg19::chr12:3157390..3157430,+p@chr12:3157390..3157430
+
Hg19::chr12:3361630..3361632,-p@chr12:3361630..3361632
-
Hg19::chr12:48513593..48513607,+p10@PFKM
Hg19::chr12:58013308..58013311,+p1@SLC26A10
Hg19::chr12:70004622..70004647,-p2@LRRC10
Hg19::chr12:70004648..70004694,-p1@LRRC10
Hg19::chr12:83866153..83866172,-p@chr12:83866153..83866172
-
Hg19::chr12:83866182..83866191,-p@chr12:83866182..83866191
-
Hg19::chr12:83866199..83866216,-p@chr12:83866199..83866216
-
Hg19::chr12:83866258..83866266,-p@chr12:83866258..83866266
-
Hg19::chr12:83866289..83866313,-p@chr12:83866289..83866313
-
Hg19::chr12:84580295..84580298,-p@chr12:84580295..84580298
-
Hg19::chr12:84580337..84580357,-p@chr12:84580337..84580357
-
Hg19::chr12:86651065..86651080,-p@chr12:86651065..86651080
-
Hg19::chr12:94730103..94730114,-p10@CCDC41
Hg19::chr13:114107827..114107830,-p9@ADPRHL1
Hg19::chr13:114107843..114107866,-p3@ADPRHL1
Hg19::chr13:114108187..114108229,-p12@ADPRHL1
Hg19::chr13:21417366..21417372,-p@chr13:21417366..21417372
-
Hg19::chr13:21417429..21417442,-p@chr13:21417429..21417442
-
Hg19::chr13:30002788..30002807,+p3@MTUS2
Hg19::chr13:30002828..30002835,+p8@MTUS2
Hg19::chr13:30002856..30002862,+p10@MTUS2
Hg19::chr13:30002890..30002905,+p4@MTUS2
Hg19::chr13:30002908..30002914,+p6@MTUS2
Hg19::chr13:30002915..30002930,+p2@MTUS2
Hg19::chr13:30002935..30002940,+p13@MTUS2
Hg19::chr13:32634993..32635015,+p12@FRY
Hg19::chr13:32635120..32635134,+p17@FRY
Hg19::chr13:76378305..76378354,+p4@LMO7
Hg19::chr14:104408853..104408880,-p1@ENST00000557640
Hg19::chr14:105939276..105939291,+p18@CRIP2
Hg19::chr14:105939312..105939322,+p20@CRIP2
Hg19::chr14:105939326..105939337,+p16@CRIP2
Hg19::chr14:105939345..105939352,+p29@CRIP2
Hg19::chr14:32964287..32964336,+p3@AKAP6
Hg19::chr14:32964346..32964349,+p14@AKAP6
Hg19::chr14:51259568..51259605,-p@chr14:51259568..51259605
-
Hg19::chr14:51259608..51259621,-p@chr14:51259608..51259621
-
Hg19::chr14:51259650..51259663,-p@chr14:51259650..51259663
-
Hg19::chr14:64685388..64685416,+p@chr14:64685388..64685416
+
Hg19::chr15:42258294..42258317,-p@chr15:42258294..42258317
-
Hg19::chr15:43363212..43363229,-p@chr15:43363212..43363229
-
Hg19::chr15:43363238..43363257,-p@chr15:43363238..43363257
-
Hg19::chr15:44172032..44172042,-p@chr15:44172032..44172042
-
Hg19::chr15:44172048..44172051,-p@chr15:44172048..44172051
-
Hg19::chr15:44172060..44172067,-p@chr15:44172060..44172067
-
Hg19::chr15:44172069..44172089,-p@chr15:44172069..44172089
-
Hg19::chr15:63127588..63127603,-p1@ENST00000558888
p1@uc002ale.1
Hg19::chr15:71300822..71300840,+p@chr15:71300822..71300840
+
Hg19::chr15:71446812..71446820,+p@chr15:71446812..71446820
+
Hg19::chr15:86122908..86122922,+p43@AKAP13
Hg19::chr15:86266190..86266249,+p@chr15:86266190..86266249
+
Hg19::chr15:86266279..86266292,+p@chr15:86266279..86266292
+
Hg19::chr15:86266294..86266308,+p@chr15:86266294..86266308
+
Hg19::chr16:19586229..19586233,+p12@C16orf62
Hg19::chr16:46791459..46791460,-p@chr16:46791459..46791460
-
Hg19::chr16:5053079..5053086,+p@chr16:5053079..5053086
+
Hg19::chr16:5053105..5053117,+p@chr16:5053105..5053117
+
Hg19::chr16:66939054..66939061,-p@chr16:66939054..66939061
-
Hg19::chr16:66939159..66939168,-p@chr16:66939159..66939168
-
Hg19::chr16:7382745..7382769,+p14@RBFOX1
Hg19::chr17:32311295..32311298,-p@chr17:32311295..32311298
-
Hg19::chr17:32311303..32311316,-p@chr17:32311303..32311316
-
Hg19::chr17:32311336..32311351,-p@chr17:32311336..32311351
-
Hg19::chr17:32311359..32311365,-p@chr17:32311359..32311365
-
Hg19::chr17:32311388..32311396,-p@chr17:32311388..32311396
-
Hg19::chr17:41949653..41949668,+p@chr17:41949653..41949668
+
Hg19::chr17:42835226..42835240,+p@chr17:42835226..42835240
+
Hg19::chr18:19748335..19748350,-p@chr18:19748335..19748350
-
Hg19::chr18:19754979..19754990,+p@chr18:19754979..19754990
+
Hg19::chr18:19769123..19769149,+p@chr18:19769123..19769149
+
Hg19::chr18:33877654..33877706,+p1@FHOD3
Hg19::chr18:34092036..34092043,+p24@FHOD3
Hg19::chr1:11919149..11919156,-p9@NPPB
Hg19::chr1:165496901..165496912,-p1@ENST00000415000
Hg19::chr1:165497023..165497030,-p3@ENST00000415000
Hg19::chr1:228131903..228131923,-p@chr1:228131903..228131923
-
Hg19::chr1:228556004..228556037,+p@chr1:228556004..228556037
+
Hg19::chr1:228556043..228556053,+p@chr1:228556043..228556053
+
Hg19::chr1:231983443..231983454,-p@chr1:231983443..231983454
-
Hg19::chr1:231983510..231983519,-p@chr1:231983510..231983519
-
Hg19::chr1:39679937..39679948,+p@chr1:39679937..39679948
+
Hg19::chr1:74701032..74701039,+p4@TNNI3K
Hg19::chr1:74701052..74701059,+p3@TNNI3K
Hg19::chr1:74701062..74701099,+p2@FPGT-TNNI3K
p2@TNNI3K
Hg19::chr1:766956..766975,+p1@ENST00000415295
Hg19::chr20:32029111..32029122,-p@chr20:32029111..32029122
-
Hg19::chr20:33565447..33565456,+p10@MYH7B
Hg19::chr20:55732283..55732288,-p@chr20:55732283..55732288
-
Hg19::chr20:55737421..55737439,-p@chr20:55737421..55737439
-
Hg19::chr20:60810171..60810183,+p@chr20:60810171..60810183
+
Hg19::chr22:18404812..18404829,-p@chr22:18404812..18404829
-
Hg19::chr22:18404837..18404840,-p@chr22:18404837..18404840
-
Hg19::chr22:18421204..18421214,-p@chr22:18421204..18421214
-
Hg19::chr22:19707027..19707059,+p20@SEPT5
Hg19::chr22:26149475..26149486,+p@chr22:26149475..26149486
+
Hg19::chr22:42072284..42072332,-p@chr22:42072284..42072332
-
Hg19::chr2:100021338..100021343,-p@chr2:100021338..100021343
-
Hg19::chr2:101878835..101878850,+p16@C2orf29
Hg19::chr2:101878862..101878871,+p18@C2orf29
Hg19::chr2:101878877..101878885,+p17@C2orf29
Hg19::chr2:101878897..101878924,+p6@C2orf29
Hg19::chr2:101878929..101878940,+p8@C2orf29
Hg19::chr2:106054837..106054867,+p@chr2:106054837..106054867
+
Hg19::chr2:106054963..106054977,-p3@FHL2
Hg19::chr2:15679051..15679071,-p@chr2:15679051..15679071
-
Hg19::chr2:159976494..159976506,+p@chr2:159976494..159976506
+
Hg19::chr2:159992442..159992463,+p7@TANC1
Hg19::chr2:163978153..163978164,+p@chr2:163978153..163978164
+
Hg19::chr2:163978183..163978189,+p@chr2:163978183..163978189
+
Hg19::chr2:163978190..163978195,+p@chr2:163978190..163978195
+
Hg19::chr2:163978208..163978214,+p@chr2:163978208..163978214
+
Hg19::chr2:169500739..169500787,+p@chr2:169500739..169500787
+
Hg19::chr2:179655481..179655489,-p@chr2:179655481..179655489
-
Hg19::chr2:179914713..179914759,-p2@CCDC141
Hg19::chr2:187472632..187472638,+p@chr2:187472632..187472638
+
Hg19::chr2:187472649..187472670,+p@chr2:187472649..187472670
+
Hg19::chr2:187472674..187472683,+p@chr2:187472674..187472683
+
Hg19::chr2:218775078..218775104,+p@chr2:218775078..218775104
+
Hg19::chr2:220491902..220491915,+p11@SLC4A3
Hg19::chr2:220491920..220491931,+p15@SLC4A3
Hg19::chr2:220491935..220491942,+p23@SLC4A3
Hg19::chr2:220491973..220491982,+p22@SLC4A3
Hg19::chr2:220492638..220492673,+p5@SLC4A3
Hg19::chr2:220492674..220492712,+p6@SLC4A3
Hg19::chr2:220492830..220492865,+p16@SLC4A3
Hg19::chr2:241715342..241715367,-p@chr2:241715342..241715367
-
Hg19::chr2:241715378..241715405,-p@chr2:241715378..241715405
-
Hg19::chr2:27939573..27939584,-p@chr2:27939573..27939584
-
Hg19::chr2:30569498..30569504,+p2@ENST00000421976
p2@uc002rnf.1
Hg19::chr2:30569506..30569518,+p1@ENST00000421976
p1@uc002rnf.1
Hg19::chr2:37716598..37716608,+p@chr2:37716598..37716608
+
Hg19::chr2:40739513..40739582,-p2@SLC8A1
Hg19::chr2:46792402..46792410,+p@chr2:46792402..46792410
+
Hg19::chr2:54697044..54697056,+p@chr2:54697044..54697056
+
Hg19::chr2:54697059..54697079,+p@chr2:54697059..54697079
+
Hg19::chr2:63054388..63054394,+p@chr2:63054388..63054394
+
Hg19::chr2:69098513..69098537,-p1@BMP10
Hg19::chr2:69810065..69810079,-p@chr2:69810065..69810079
-
Hg19::chr3:119379719..119379737,-p2@POPDC2
Hg19::chr3:119379740..119379743,-p5@POPDC2
Hg19::chr3:119379772..119379779,-p3@POPDC2
Hg19::chr3:123054074..123054080,-p@chr3:123054074..123054080
-
Hg19::chr3:156807663..156807677,+p1@LOC100498859
Hg19::chr3:156807693..156807705,+p2@LOC100498859
Hg19::chr3:156807716..156807729,+p5@LOC100498859
Hg19::chr3:156807749..156807758,+p7@LOC100498859
Hg19::chr3:156807773..156807794,+p3@LOC100498859
Hg19::chr3:167582632..167582646,+p1@ENST00000464514
Hg19::chr3:167744613..167744626,-p@chr3:167744613..167744626
-
Hg19::chr3:16940478..16940500,+p@chr3:16940478..16940500
+
Hg19::chr3:16940540..16940554,+p@chr3:16940540..16940554
+
Hg19::chr3:52486841..52486882,-p5@TNNC1
Hg19::chr3:52486907..52486937,-p7@TNNC1
Hg19::chr4:120860706..120860722,+p1@ENST00000505122
Hg19::chr4:126729492..126729495,+p@chr4:126729492..126729495
+
Hg19::chr4:13834497..13834502,+p@chr4:13834497..13834502
+
Hg19::chr4:142053930..142053944,-p1@AB384141
Hg19::chr4:143767407..143767418,-p15@INPP4B
Hg19::chr4:153303658..153303669,-p9@FBXW7
Hg19::chr4:169418195..169418211,+p5@PALLD
Hg19::chr4:169418226..169418239,+p10@PALLD
Hg19::chr4:174451652..174451655,+p1@ENST00000505817
Hg19::chr4:174451884..174451908,+p1@ENST00000510268
Hg19::chr4:186598476..186598485,+p@chr4:186598476..186598485
+
Hg19::chr4:186733029..186733044,-p8@SORBS2
Hg19::chr4:186733094..186733109,-p4@SORBS2
Hg19::chr4:186733119..186733132,-p7@SORBS2
Hg19::chr4:186733135..186733144,-p20@SORBS2
Hg19::chr4:186733311..186733322,-p16@SORBS2
Hg19::chr4:23890635..23890644,-p@chr4:23890635..23890644
-
Hg19::chr4:23890736..23890747,-p@chr4:23890736..23890747
-
Hg19::chr4:23890773..23890782,-p@chr4:23890773..23890782
-
Hg19::chr4:23890805..23890834,-p@chr4:23890805..23890834
-
Hg19::chr4:23891078..23891086,-p@chr4:23891078..23891086
-
Hg19::chr4:47840112..47840128,-p2@CORIN
Hg19::chr4:53417811..53417814,-p@chr4:53417811..53417814
-
Hg19::chr4:54280616..54280650,+p@chr4:54280616..54280650
+
Hg19::chr4:5815435..5815459,+p@chr4:5815435..5815459
+
Hg19::chr4:62999459..62999462,+p@chr4:62999459..62999462
+
Hg19::chr4:62999480..62999497,+p@chr4:62999480..62999497
+
Hg19::chr4:62999501..62999517,+p@chr4:62999501..62999517
+
Hg19::chr4:65188168..65188171,-p@chr4:65188168..65188171
-
Hg19::chr4:80180020..80180024,+p1@ENST00000511241
Hg19::chr4:8321882..8321893,+p2@ENST00000509453
Hg19::chr4:95375884..95375900,+p15@PDLIM5
Hg19::chr5:127731131..127731137,+p@chr5:127731131..127731137
+
Hg19::chr5:128300783..128300794,+p7@SLC27A6
Hg19::chr5:128300810..128300817,+p15@SLC27A6
Hg19::chr5:137136880..137136883,+p2@NPY6R
Hg19::chr5:137136896..137136901,+p3@NPY6R
Hg19::chr5:137136903..137136955,+p1@NPY6R
Hg19::chr5:142077517..142077537,-p10@FGF1
Hg19::chr5:148796836..148796851,-p@chr5:148796836..148796851
-
Hg19::chr5:148803623..148803635,+p@chr5:148803623..148803635
+
Hg19::chr5:148803639..148803645,+p@chr5:148803639..148803645
+
Hg19::chr5:16129236..16129244,+p2@ENST00000502834
Hg19::chr5:16129259..16129264,+p3@ENST00000502834
Hg19::chr5:16129316..16129326,+p1@ENST00000502834
Hg19::chr5:172671779..172671790,-p@chr5:172671779..172671790
-
Hg19::chr5:175084679..175084689,+p4@HRH2
Hg19::chr5:191565..191568,+p17@LRRC14B
Hg19::chr5:191592..191615,+p1@LRRC14B
Hg19::chr5:191665..191676,+p5@LRRC14B
Hg19::chr5:191685..191693,+p8@LRRC14B
Hg19::chr5:191707..191717,+p6@LRRC14B
Hg19::chr5:191719..191728,+p12@LRRC14B
Hg19::chr5:191743..191749,+p15@LRRC14B
Hg19::chr5:191752..191765,+p2@LRRC14B
Hg19::chr5:191886..191899,+p4@LRRC14B
Hg19::chr5:65736348..65736358,-p@chr5:65736348..65736358
-
Hg19::chr5:78808641..78808653,-p15@HOMER1
Hg19::chr5:93958952..93958996,+p@chr5:93958952..93958996
+
Hg19::chr6:105584976..105584993,-p2@BVES
Hg19::chr6:105585002..105585013,-p3@BVES
Hg19::chr6:105585022..105585112,-p1@BVES
Hg19::chr6:118606386..118606394,+p@chr6:118606386..118606394
+
Hg19::chr6:118606418..118606429,+p@chr6:118606418..118606429
+
Hg19::chr6:118869452..118869475,+p1@PLN
Hg19::chr6:123760711..123760719,+p2@uc003pzm.1
Hg19::chr6:138423214..138423233,-p@chr6:138423214..138423233
-
Hg19::chr6:138423239..138423250,-p@chr6:138423239..138423250
-
Hg19::chr6:152489426..152489452,-p19@SYNE1
Hg19::chr6:152489465..152489470,-p61@SYNE1
Hg19::chr6:163507552..163507560,+p@chr6:163507552..163507560
+
Hg19::chr6:163507565..163507584,+p@chr6:163507565..163507584
+
Hg19::chr6:163507585..163507592,+p@chr6:163507585..163507592
+
Hg19::chr6:163508076..163508084,+p@chr6:163508076..163508084
+
Hg19::chr6:163630289..163630316,+p@chr6:163630289..163630316
+
Hg19::chr6:164383767..164383779,-p@chr6:164383767..164383779
-
Hg19::chr6:17281091..17281107,-p@chr6:17281091..17281107
-
Hg19::chr6:17281237..17281260,+p1@RBM24
Hg19::chr6:53883790..53883801,+p6@MLIP
Hg19::chr6:55956418..55956429,-p7@COL21A1
Hg19::chr6:55956449..55956468,-p3@COL21A1
Hg19::chr6:6739548..6739577,-p@chr6:6739548..6739577
-
Hg19::chr6:73471792..73471805,+p@chr6:73471792..73471805
+
Hg19::chr7:107121368..107121392,-p10@COG5
Hg19::chr7:145378479..145378484,-p1@ENST00000422084
Hg19::chr7:151426883..151426889,-p@chr7:151426883..151426889
-
Hg19::chr7:33594452..33594459,+p@chr7:33594452..33594459
+
Hg19::chr7:33594471..33594478,+p@chr7:33594471..33594478
+
Hg19::chr7:33594483..33594496,+p@chr7:33594483..33594496
+
Hg19::chr7:35253487..35253489,-p@chr7:35253487..35253489
-
Hg19::chr7:35286774..35286778,-p@chr7:35286774..35286778
-
Hg19::chr7:35293665..35293680,-p2@TBX20
Hg19::chr7:35293685..35293718,-p1@TBX20
Hg19::chr7:35294320..35294351,+p@chr7:35294320..35294351
+
Hg19::chr7:44180682..44180687,-p10@MYL7
Hg19::chr7:44181138..44181145,-p4@MYL7
Hg19::chr7:69432450..69432470,+p@chr7:69432450..69432470
+
Hg19::chr8:133772952..133772963,-p7@TMEM71
Hg19::chr8:145535006..145535018,+p18@HSF1
Hg19::chr8:18680071..18680082,-p@chr8:18680071..18680082
-
Hg19::chr8:18681020..18681041,-p@chr8:18681020..18681041
-
Hg19::chr8:18708993..18709004,-p@chr8:18708993..18709004
-
Hg19::chr8:18709015..18709027,-p@chr8:18709015..18709027
-
Hg19::chr8:18709033..18709046,-p@chr8:18709033..18709046
-
Hg19::chr8:18709050..18709061,-p@chr8:18709050..18709061
-
Hg19::chr8:18711727..18711747,-p19@PSD3
Hg19::chr8:18711750..18711796,-p13@PSD3
Hg19::chr8:25338092..25338097,-p@chr8:25338092..25338097
-
Hg19::chr8:28749255..28749267,+p@chr8:28749255..28749267
+
Hg19::chr8:66701319..66701330,-p14@PDE7A
Hg19::chr8:66701339..66701344,-p29@PDE7A
Hg19::chr8:67039452..67039469,+p2@TRIM55
Hg19::chr8:67039474..67039487,+p3@TRIM55
Hg19::chr8:94029882..94029898,-p7@C8orf83
Hg19::chr8:94029943..94029948,-p14@C8orf83
Hg19::chr9:109213096..109213107,+p1@ENST00000425709
p1@uc004bcx.2
Hg19::chr9:38650184..38650198,+p@chr9:38650184..38650198
+
Hg19::chr9:38650208..38650223,+p@chr9:38650208..38650223
+
Hg19::chr9:38650254..38650266,+p@chr9:38650254..38650266
+
Hg19::chr9:5044414..5044429,+p9@JAK2
Hg19::chr9:5044431..5044442,+p12@JAK2
Hg19::chrX:117119373..117119377,-p5@KLHL13
Hg19::chrX:153555964..153555979,+p5@TKTL1
Hg19::chrX:47434158..47434209,-p@chrX:47434158..47434209
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

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ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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