Personal tools

Coexpression cluster:C94

From FANTOM5_SSTAR

Revision as of 16:24, 18 May 2012 by Autoedit (talk | contribs) (Created page with "{{Coexpression_clusters |full_id=C94_smallcell_adrenal_lung_nonsmall_small_somatostatinoma_teratocarcinoma |id=C94 }}")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search


Full id: C94_smallcell_adrenal_lung_nonsmall_small_somatostatinoma_teratocarcinoma



Phase1 CAGE Peaks

Hg19::chr10:126027036..126027041,-p@chr10:126027036..126027041
-
Hg19::chr10:5407022..5407032,+p4@UCN3
Hg19::chr10:77056134..77056153,+p1@ZNF503-AS1
Hg19::chr10:77056181..77056190,+p2@ZNF503-AS1
Hg19::chr11:115158193..115158232,-p15@CADM1
Hg19::chr11:14992712..14992724,-p2@CALCA
Hg19::chr11:1643592..1643602,+p@chr11:1643592..1643602
+
Hg19::chr11:4718911..4718938,-p2@OR51E2
Hg19::chr11:4718944..4718953,-p4@OR51E2
Hg19::chr11:4719014..4719028,-p3@OR51E2
Hg19::chr11:4719072..4719089,-p1@OR51E2
Hg19::chr11:60467048..60467063,+p4@MS4A8B
Hg19::chr12:103353319..103353328,+p@chr12:103353319..103353328
+
Hg19::chr12:127992016..127992052,+p@chr12:127992016..127992052
+
Hg19::chr12:128077388..128077416,+p@chr12:128077388..128077416
+
Hg19::chr12:15784419..15784458,-p18@EPS8
Hg19::chr12:22852866..22852887,+p1@ENST00000536744
Hg19::chr12:23791058..23791099,+p@chr12:23791058..23791099
+
Hg19::chr12:50284871..50284904,-p@chr12:50284871..50284904
-
Hg19::chr12:86268065..86268080,+p1@NTS
Hg19::chr12:86272210..86272219,+p@chr12:86272210..86272219
+
Hg19::chr12:86272273..86272280,+p@chr12:86272273..86272280
+
Hg19::chr12:92401823..92401837,+p@chr12:92401823..92401837
+
Hg19::chr12:92401866..92401875,+p@chr12:92401866..92401875
+
Hg19::chr13:26619917..26619921,-p@chr13:26619917..26619921
-
Hg19::chr13:26626147..26626161,-p@chr13:26626147..26626161
-
Hg19::chr13:33498605..33498607,-p@chr13:33498605..33498607
-
Hg19::chr13:38508582..38508616,+p2@CR627261
Hg19::chr13:93329950..93329974,-p@chr13:93329950..93329974
-
Hg19::chr13:93372213..93372253,-p1@GPC5-AS1
Hg19::chr13:93372254..93372268,-p2@GPC5-AS1
Hg19::chr13:93372269..93372274,-p3@GPC5-AS1
Hg19::chr13:93372283..93372290,-p4@GPC5-AS1
Hg19::chr13:93439916..93439921,-p@chr13:93439916..93439921
-
Hg19::chr13:93508642..93508652,-p@chr13:93508642..93508652
-
Hg19::chr14:105637918..105637925,-p@chr14:105637918..105637925
-
Hg19::chr14:105643341..105643359,-p@chr14:105643341..105643359
-
Hg19::chr14:76278486..76278493,+p@chr14:76278486..76278493
+
Hg19::chr14:76447825..76447863,-p5@TGFB3
Hg19::chr15:51981498..51981513,+p@chr15:51981498..51981513
+
Hg19::chr15:51984388..51984400,+p6@SCG3
Hg19::chr15:59908653..59908680,+p4@GCNT3
Hg19::chr15:74528745..74528750,+p8@CCDC33
Hg19::chr15:74612015..74612053,-p@chr15:74612015..74612053
-
Hg19::chr16:1132642..1132649,-p@chr16:1132642..1132649
-
Hg19::chr16:1205163..1205193,+p@chr16:1205163..1205193
+
Hg19::chr16:12121188..12121212,+p@chr16:12121188..12121212
+
Hg19::chr16:15670786..15670791,-p@chr16:15670786..15670791
-
Hg19::chr16:15672837..15672851,+p@chr16:15672837..15672851
+
Hg19::chr16:15699973..15700008,-p10@KIAA0430
Hg19::chr16:1631093..1631103,-p@chr16:1631093..1631103
-
Hg19::chr16:1968408..1968425,-p1@HS3ST6
Hg19::chr16:23313614..23313629,+p2@SCNN1B
Hg19::chr16:23313645..23313671,+p1@SCNN1B
Hg19::chr16:71378536..71378548,-p@chr16:71378536..71378548
-
Hg19::chr16:735116..735143,-p@chr16:735116..735143
-
Hg19::chr17:1666131..1666142,+p@chr17:1666131..1666142
+
Hg19::chr18:56815532..56815544,+p@chr18:56815532..56815544
+
Hg19::chr18:56816249..56816258,+p@chr18:56816249..56816258
+
Hg19::chr18:56816267..56816276,+p@chr18:56816267..56816276
+
Hg19::chr18:56816796..56816816,+p@chr18:56816796..56816816
+
Hg19::chr18:56819783..56819803,+p@chr18:56819783..56819803
+
Hg19::chr18:56822974..56823004,-p@chr18:56822974..56823004
-
Hg19::chr18:71843121..71843138,+p@chr18:71843121..71843138
+
Hg19::chr18:71843159..71843180,+p@chr18:71843159..71843180
+
Hg19::chr18:904938..904986,+p2@ADCYAP1
Hg19::chr18:904994..905011,+p5@ADCYAP1
Hg19::chr18:905092..905103,+p12@ADCYAP1
Hg19::chr18:905104..905118,+p10@ADCYAP1
Hg19::chr19:10823418..10823430,+p15@DNM2
Hg19::chr19:10823451..10823463,+p10@DNM2
Hg19::chr19:10823464..10823473,+p16@DNM2
Hg19::chr19:3068219..3068225,-p@chr19:3068219..3068225
-
Hg19::chr19:42638173..42638181,+p1@ENST00000531517
Hg19::chr19:51537964..51537973,-p6@KLK12
Hg19::chr19:51537982..51537991,-p8@KLK12
Hg19::chr19:51538017..51538048,-p3@KLK12
Hg19::chr19:51538096..51538109,-p5@KLK12
Hg19::chr19:51538121..51538134,-p4@KLK12
Hg19::chr1:147084502..147084507,+p@chr1:147084502..147084507
+
Hg19::chr1:15416193..15416195,-p@chr1:15416193..15416195
-
Hg19::chr1:165198157..165198181,-p@chr1:165198157..165198181
-
Hg19::chr1:17906670..17906682,+p17@ARHGEF10L
Hg19::chr1:18807428..18807451,+p2@KLHDC7A
Hg19::chr1:188791401..188791408,-p@chr1:188791401..188791408
-
Hg19::chr1:209237425..209237437,-p@chr1:209237425..209237437
-
Hg19::chr1:222763113..222763144,-p3@TAF1A
Hg19::chr1:222763161..222763178,-p4@TAF1A
Hg19::chr1:223853355..223853378,-p2@CAPN8
Hg19::chr1:223853388..223853408,-p1@CAPN8
Hg19::chr1:223853431..223853436,-p4@CAPN8
Hg19::chr1:226067570..226067582,-p@chr1:226067570..226067582
-
Hg19::chr1:27240361..27240377,-p2@NR0B2
Hg19::chr1:39749767..39749791,+p17@MACF1
Hg19::chr1:52442908..52442917,-p9@RAB3B
Hg19::chr1:55446384..55446413,+p3@TMEM61
Hg19::chr20:10996541..10996543,+p@chr20:10996541..10996543
+
Hg19::chr20:17207711..17207722,+p3@PCSK2
Hg19::chr20:2310990..2310996,+p@chr20:2310990..2310996
+
Hg19::chr20:2311002..2311015,+p@chr20:2311002..2311015
+
Hg19::chr20:3184528..3184549,-p@chr20:3184528..3184549
-
Hg19::chr20:3184707..3184740,+p@chr20:3184707..3184740
+
Hg19::chr20:31958369..31958376,-p@chr20:31958369..31958376
-
Hg19::chr20:31958409..31958418,-p@chr20:31958409..31958418
-
Hg19::chr20:33114038..33114096,+p2@DYNLRB1
Hg19::chr20:3780693..3780714,+p17@CDC25B
Hg19::chr20:49241036..49241049,-p@chr20:49241036..49241049
-
Hg19::chr20:5896962..5896986,+p@chr20:5896962..5896986
+
Hg19::chr22:24251729..24251732,-p@chr22:24251729..24251732
-
Hg19::chr22:25297679..25297722,+p@chr22:25297679..25297722
+
Hg19::chr2:135011636..135011649,+p8@MGAT5
Hg19::chr2:163942394..163942398,+p@chr2:163942394..163942398
+
Hg19::chr2:170367210..170367234,+p6@KBTBD10
Hg19::chr2:191221240..191221253,+p17@INPP1
Hg19::chr2:214788522..214788538,+p2@SPAG16
Hg19::chr2:236414196..236414199,+p1@AGAP1-IT1
Hg19::chr2:2617159..2617172,-p@chr2:2617159..2617172
-
Hg19::chr2:99758223..99758246,+p3@C2orf15
p6@MRPL30
Hg19::chr3:129813701..129813712,+p@chr3:129813701..129813712
+
Hg19::chr3:13369325..13369334,-p6@NUP210
Hg19::chr3:148994474..148994479,-p1@CPHL1P
Hg19::chr3:176474114..176474132,-p@chr3:176474114..176474132
-
Hg19::chr3:186713943..186713982,+p35@ST6GAL1
Hg19::chr3:20038294..20038297,+p1@ENST00000364675
Hg19::chr3:55328211..55328214,+p@chr3:55328211..55328214
+
Hg19::chr3:55361260..55361286,-p@chr3:55361260..55361286
-
Hg19::chr4:10736435..10736454,-p@chr4:10736435..10736454
-
Hg19::chr4:10736455..10736475,-p@chr4:10736455..10736475
-
Hg19::chr4:10736487..10736498,-p@chr4:10736487..10736498
-
Hg19::chr4:114880636..114880650,+p@chr4:114880636..114880650
+
Hg19::chr4:116034768..116034781,-p2@NDST4
Hg19::chr4:144354723..144354734,+p@chr4:144354723..144354734
+
Hg19::chr4:156364770..156364801,+p@chr4:156364770..156364801
+
Hg19::chr5:102143765..102143784,+p22@PAM
Hg19::chr5:102143805..102143822,+p13@PAM
Hg19::chr5:102143830..102143844,+p18@PAM
Hg19::chr5:102143863..102143874,+p23@PAM
Hg19::chr5:125800836..125800850,+p21@GRAMD3
Hg19::chr5:138429594..138429616,-p7@SIL1
Hg19::chr5:15902227..15902252,-p@chr5:15902227..15902252
-
Hg19::chr5:40415240..40415245,+p@chr5:40415240..40415245
+
Hg19::chr5:54157..54174,+p@chr5:54157..54174
+
Hg19::chr6:132980317..132980326,-p@chr6:132980317..132980326
-
Hg19::chr6:132980338..132980346,-p@chr6:132980338..132980346
-
Hg19::chr6:24980950..24980956,+p@chr6:24980950..24980956
+
Hg19::chr6:32134832..32134862,+p11@EGFL8
Hg19::chr6:41168871..41168911,-p1@TREML2
Hg19::chr6:41168920..41168927,-p4@TREML2
Hg19::chr6:48219854..48219891,-p@chr6:48219854..48219891
-
Hg19::chr6:49695621..49695625,-p@chr6:49695621..49695625
-
Hg19::chr6:49696401..49696408,-p@chr6:49696401..49696408
-
Hg19::chr6:49701451..49701462,-p@chr6:49701451..49701462
-
Hg19::chr6:49712072..49712087,-p2@CRISP3
Hg19::chr7:100816687..100816697,-p4@NAT16
Hg19::chr7:130600779..130600797,+p@chr7:130600779..130600797
+
Hg19::chr7:130600802..130600814,+p@chr7:130600802..130600814
+
Hg19::chr7:150499243..150499249,-p@chr7:150499243..150499249
-
Hg19::chr7:150499392..150499424,-p@chr7:150499392..150499424
-
Hg19::chr7:150499428..150499436,-p@chr7:150499428..150499436
-
Hg19::chr7:150499437..150499449,-p@chr7:150499437..150499449
-
Hg19::chr7:150500070..150500081,+p27@TMEM176A
Hg19::chr7:150500286..150500288,-p@chr7:150500286..150500288
-
Hg19::chr7:150500382..150500396,+p9@TMEM176A
Hg19::chr7:150500441..150500448,+p34@TMEM176A
Hg19::chr7:150675342..150675363,-p4@KCNH2
Hg19::chr7:150675372..150675417,-p1@KCNH2
Hg19::chr7:21985656..21985667,-p3@CDCA7L
Hg19::chr7:26415673..26415697,-p@chr7:26415673..26415697
-
Hg19::chr7:26578438..26578451,-p2@KIAA0087
Hg19::chr7:26578466..26578485,-p1@KIAA0087
Hg19::chr7:27191798..27191816,-p@chr7:27191798..27191816
-
Hg19::chr7:29971838..29971870,-p@chr7:29971838..29971870
-
Hg19::chr7:36327304..36327316,+p11@EEPD1
Hg19::chr7:36327318..36327333,+p14@EEPD1
Hg19::chr7:872107..872145,+p2@SUN1
Hg19::chr7:92300854..92300857,-p@chr7:92300854..92300857
-
Hg19::chr7:92300908..92300913,-p@chr7:92300908..92300913
-
Hg19::chr7:99541928..99541935,-p@chr7:99541928..99541935
-
Hg19::chr8:10122760..10122784,+p@chr8:10122760..10122784
+
Hg19::chr8:104148509..104148517,+p@chr8:104148509..104148517
+
Hg19::chr8:125183765..125183776,-p1@ENST00000520031
p1@uc003yqy.1
Hg19::chr8:139856402..139856426,-p@chr8:139856402..139856426
-
Hg19::chr8:141018634..141018657,-p6@TRAPPC9
Hg19::chr8:141018664..141018674,-p15@TRAPPC9
Hg19::chr8:2104622..2104638,+p2@ENST00000518316
Hg19::chr8:29592736..29592744,-p3@C8orf75
Hg19::chr9:130738884..130738902,-p@chr9:130738884..130738902
-
Hg19::chr9:130738905..130738929,-p@chr9:130738905..130738929
-
Hg19::chr9:133816046..133816048,-p@chr9:133816046..133816048
-
Hg19::chr9:133816054..133816060,-p@chr9:133816054..133816060
-
Hg19::chr9:133816065..133816079,-p@chr9:133816065..133816079
-
Hg19::chr9:133816081..133816105,-p@chr9:133816081..133816105
-
Hg19::chr9:136467523..136467541,-p@chr9:136467523..136467541
-
Hg19::chr9:136499577..136499584,+p@chr9:136499577..136499584
+
Hg19::chr9:136753424..136753441,-p@chr9:136753424..136753441
-
Hg19::chr9:139940990..139941047,-p4@NPDC1
Hg19::chrX:103810874..103810885,+p1@IL1RAPL2
Hg19::chrX:104100378..104100381,+p@chrX:104100378..104100381
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C94&oldid=1698119"