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{{DOID
{{DOID
|id=DOID:5409
|alt_id=
|name=lung small cell carcinoma
|namespace=disease_ontology
|def=
|xref=MSH:D055752;;NCI:C4917;;OMIM:182280;;SNOMEDCT_2010_1_31:254632001;;SNOMEDCT_2010_1_31:254633006;;UMLS_CUI:C0149925
|is_a=DOID:3905
|synonym="Oat cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254633006];;"SCLC" EXACT [CSP2005:2017-6589];;"small cell carcinoma of lung" RELATED [];;"small cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254632001];;"small cell neuroendocrine carcinoma of lung" EXACT [NCI2004_11_17:C4917]
|comment=OMIM mapping confirmed by DO. [SN].
|comment=OMIM mapping confirmed by DO. [SN].
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:5409
|is_a=DOID:3905
|is_obsolete=
|located_in=
|located_in=
|name=lung small cell carcinoma
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="Oat cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254633006];;"SCLC" EXACT [CSP2005:2017-6589];;"small cell carcinoma of lung" RELATED [];;"small cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254632001];;"small cell neuroendocrine carcinoma of lung" EXACT [NCI2004_11_17:C4917]
|union_of=
|xref=MSH:D055752;;NCI:C4917;;OMIM:182280;;SNOMEDCT_2010_1_31:254632001;;SNOMEDCT_2010_1_31:254633006;;UMLS_CUI:C0149925
}}
}}

Latest revision as of 16:52, 12 September 2014

Name:lung small cell carcinoma
Namespace:FANTOM
Xrefs:
links:

MSH:D055752
NCI:C4917
OMIM:182280
SNOMEDCT_2010_1_31:254632001
SNOMEDCT_2010_1_31:254633006

UMLS_CUI:C0149925
Synonyms: "Oat cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254633006]
"SCLC" EXACT [CSP2005:2017-6589]
"small cell carcinoma of lung" RELATED []
"small cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254632001]
"small cell neuroendocrine carcinoma of lung" EXACT [NCI2004_11_17:C4917]
Comments:OMIM mapping confirmed by DO. [SN].

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:3905(lung carcinoma)



Children
NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:5409 (lung small cell carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_5a0cadd9f97072f65b901942816bde31p@chr6:125378873..125378876, +
1.55e-98FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_5a0cadd9f97072f65b901942816bde31p@chr6:125378873..125378876, +
2.4e-66FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_40c90676995a138ba0819dfe8db6fb93p@chr8:40525350..40525354, -
2.4e-66FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_40c90676995a138ba0819dfe8db6fb93p@chr8:40525350..40525354, -
3.1e-50FFCP PHASE1:Hg19::chr4:39301903..39301910,-#_5be4114e7d0131f457d60e83d77a108dp@chr4:39301903..39301910, -
3.1e-50FFCP PHASE2:Hg19::chr8:72938203..72938230,+#_5be4114e7d0131f457d60e83d77a108dp@chr8:72938203..72938230, +
3.1e-50FFCP PHASE2:Hg19::chr3:86701902..86701920,-#_5be4114e7d0131f457d60e83d77a108dp@chr3:86701902..86701920, -
3.1e-50FFCP PHASE1:Hg19::chr8:98065877..98065881,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:98065877..98065881, -
3.1e-50FFCP PHASE1:Hg19::chr6:140771120..140771128,+#_5be4114e7d0131f457d60e83d77a108dp@chr6:140771120..140771128, +
3.1e-50FFCP PHASE2:Hg19::chr7:79840276..79840283,+#_5be4114e7d0131f457d60e83d77a108dp@chr7:79840276..79840283, +
3.1e-50FFCP PHASE2:Hg19::chr6:125378772..125378777,+#_5be4114e7d0131f457d60e83d77a108dp@chr6:125378772..125378777, +
3.1e-50FFCP PHASE1:Hg19::chr10:66459172..66459188,-#_5be4114e7d0131f457d60e83d77a108dp@chr10:66459172..66459188, -
3.1e-50FFCP PHASE2:Hg19::chr1:33705218..33705225,-#_5be4114e7d0131f457d60e83d77a108dp@chr1:33705218..33705225, -
3.1e-50FFCP PHASE1:Hg19::chr7:26482694..26482710,-#_5be4114e7d0131f457d60e83d77a108dp@chr7:26482694..26482710, -
3.1e-50FFCP PHASE2:Hg19::chr2:23850233..23850248,+#_5be4114e7d0131f457d60e83d77a108dp@chr2:23850233..23850248, +
3.1e-50FFCP PHASE1:Hg19::chr8:57526601..57526612,+#_5be4114e7d0131f457d60e83d77a108dp@chr8:57526601..57526612, +
3.1e-50FFCP PHASE1:Hg19::chr6:998897..998898,-#_5be4114e7d0131f457d60e83d77a108dp@chr6:998897..998898, -
3.1e-50FFCP PHASE1:Hg19::chr2:103235329..103235342,+#_5be4114e7d0131f457d60e83d77a108dp@chr2:103235329..103235342, +
3.1e-50FFCP PHASE2:Hg19::chr6:154729003..154729006,-#_5be4114e7d0131f457d60e83d77a108dp@chr6:154729003..154729006, -
3.1e-50FFCP PHASE1:Hg19::chr14:59132994..59133018,+#_5be4114e7d0131f457d60e83d77a108dp@chr14:59132994..59133018, +
3.1e-50FFCP PHASE1:Hg19::chr11:20362300..20362305,+#_5be4114e7d0131f457d60e83d77a108dp@chr11:20362300..20362305, +
3.1e-50FFCP PHASE2:Hg19::chr5:6961030..6961034,+#_5be4114e7d0131f457d60e83d77a108dp@chr5:6961030..6961034, +
3.1e-50FFCP PHASE1:Hg19::chr6:31681859..31681865,-#_5be4114e7d0131f457d60e83d77a108dp3@LY6G6E
3.1e-50FFCP PHASE1:Hg19::chr2:222127471..222127478,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:222127471..222127478, -
3.1e-50FFCP PHASE1:Hg19::chr18:73967160..73967162,-#_5be4114e7d0131f457d60e83d77a108dp@chr18:73967160..73967162, -
3.1e-50FFCP PHASE2:Hg19::chr3:78334430..78334433,-#_5be4114e7d0131f457d60e83d77a108dp@chr3:78334430..78334433, -
3.1e-50FFCP PHASE2:Hg19::chr2:202413051..202413061,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:202413051..202413061, -
3.1e-50FFCP PHASE1:Hg19::chr8:97964849..97964868,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:97964849..97964868, -
3.1e-50FFCP PHASE1:Hg19::chr3:1991867..1991875,-#_5be4114e7d0131f457d60e83d77a108dp@chr3:1991867..1991875, -
3.1e-50FFCP PHASE1:Hg19::chr21:38295313..38295326,-#_5be4114e7d0131f457d60e83d77a108dp@chr21:38295313..38295326, -
3.1e-50FFCP PHASE1:Hg19::chr18:10085799..10085809,+#_5be4114e7d0131f457d60e83d77a108dp@chr18:10085799..10085809, +
3.1e-50FFCP PHASE2:Hg19::chr10:129704473..129704478,+#_5be4114e7d0131f457d60e83d77a108dp@chr10:129704473..129704478, +
3.1e-50FFCP PHASE1:Hg19::chr4:81460545..81460547,-#_5be4114e7d0131f457d60e83d77a108dp@chr4:81460545..81460547, -
3.1e-50FFCP PHASE1:Hg19::chr2:241625475..241625482,+#_5be4114e7d0131f457d60e83d77a108dp8@ENST00000407635
3.1e-50FFCP PHASE2:Hg19::chr8:97961449..97961460,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:97961449..97961460, -
3.1e-50FFCP PHASE1:Hg19::chr1:168756303..168756308,+#_5be4114e7d0131f457d60e83d77a108dp1@MGC4473
3.1e-50FFCP PHASE2:Hg19::chr4:41749788..41749795,-#_5be4114e7d0131f457d60e83d77a108dp10@PHOX2B
3.1e-50FFCP PHASE2:Hg19::chr2:234862409..234862414,+#_5be4114e7d0131f457d60e83d77a108dp14@TRPM8
3.1e-50FFCP PHASE2:Hg19::chr16:13010455..13010466,+#_5be4114e7d0131f457d60e83d77a108dp@chr16:13010455..13010466, +
3.1e-50FFCP PHASE2:Hg19::chr14:89802926..89802934,-#_5be4114e7d0131f457d60e83d77a108dp@chr14:89802926..89802934, -
3.1e-50FFCP PHASE1:Hg19::chr9:129234745..129234747,-#_5be4114e7d0131f457d60e83d77a108dp@chr9:129234745..129234747, -
3.1e-50FFCP PHASE2:Hg19::chr8:98066259..98066270,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:98066259..98066270, -
3.1e-50FFCP PHASE1:Hg19::chr11:98528704..98528712,+#_5be4114e7d0131f457d60e83d77a108dp@chr11:98528704..98528712, +
3.1e-50FFCP PHASE1:Hg19::chr20:45418126..45418131,-#_5be4114e7d0131f457d60e83d77a108dp@chr20:45418126..45418131, -
3.1e-50FFCP PHASE2:Hg19::chr7:26482715..26482738,-#_5be4114e7d0131f457d60e83d77a108dp@chr7:26482715..26482738, -
3.1e-50FFCP PHASE2:Hg19::chr5:33619040..33619056,-#_5be4114e7d0131f457d60e83d77a108dp@chr5:33619040..33619056, -
3.1e-50FFCP PHASE2:Hg19::chr3:115898365..115898379,+#_5be4114e7d0131f457d60e83d77a108dp@chr3:115898365..115898379, +
3.1e-50FFCP PHASE2:Hg19::chr1:181360250..181360259,+#_5be4114e7d0131f457d60e83d77a108dp@chr1:181360250..181360259, +
3.1e-50FFCP PHASE1:Hg19::chr17:39140424..39140431,-#_5be4114e7d0131f457d60e83d77a108dp4@KRT40
3.1e-50FFCP PHASE2:Hg19::chr2:51255348..51255351,+#_5be4114e7d0131f457d60e83d77a108dp@chr2:51255348..51255351, +
3.1e-50FFCP PHASE2:Hg19::chr13:76755731..76755739,+#_5be4114e7d0131f457d60e83d77a108dp@chr13:76755731..76755739, +
3.1e-50FFCP PHASE1:Hg19::chr4:6324309..6324314,-#_5be4114e7d0131f457d60e83d77a108dp43@PPP2R2C
3.1e-50FFCP PHASE1:Hg19::chr2:97626580..97626585,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:97626580..97626585, -
3.1e-50FFCP PHASE2:Hg19::chr2:222160741..222160750,+#_5be4114e7d0131f457d60e83d77a108dp@chr2:222160741..222160750, +
3.1e-50FFCP PHASE2:Hg19::chr18:73967160..73967162,-#_5be4114e7d0131f457d60e83d77a108dp@chr18:73967160..73967162, -
3.1e-50FFCP PHASE1:Hg19::chr6:154858693..154858698,+#_5be4114e7d0131f457d60e83d77a108dp@chr6:154858693..154858698, +
3.1e-50FFCP PHASE2:Hg19::chr8:97965705..97965721,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:97965705..97965721, -
3.1e-50FFCP PHASE1:Hg19::chr19:46763326..46763349,+#_5be4114e7d0131f457d60e83d77a108dp@chr19:46763326..46763349, +
3.1e-50FFCP PHASE1:Hg19::chr18:37331745..37331763,-#_5be4114e7d0131f457d60e83d77a108dp@chr18:37331745..37331763, -
3.1e-50FFCP PHASE2:Hg19::chr6:129513919..129513922,+#_5be4114e7d0131f457d60e83d77a108dp@chr6:129513919..129513922, +
3.1e-50FFCP PHASE1:Hg19::chr15:62007373..62007374,-#_5be4114e7d0131f457d60e83d77a108dp2@ENST00000559590
3.1e-50FFCP PHASE2:Hg19::chr18:10085799..10085809,+#_5be4114e7d0131f457d60e83d77a108dp@chr18:10085799..10085809, +
3.1e-50FFCP PHASE1:Hg19::chrX:48394285..48394295,+#_5be4114e7d0131f457d60e83d77a108dp@chrX:48394285..48394295, +
3.1e-50FFCP PHASE1:Hg19::chr5:79097476..79097484,+#_5be4114e7d0131f457d60e83d77a108dp@chr5:79097476..79097484, +
3.1e-50FFCP PHASE2:Hg19::chrX:135761770..135761786,-#_5be4114e7d0131f457d60e83d77a108dp@chrX:135761770..135761786, -
3.1e-50FFCP PHASE1:Hg19::chr1:199134722..199134729,+#_5be4114e7d0131f457d60e83d77a108dp@chr1:199134722..199134729, +
3.1e-50FFCP PHASE2:Hg19::chr7:21209872..21209910,+#_5be4114e7d0131f457d60e83d77a108dp@chr7:21209872..21209910, +
3.1e-50FFCP PHASE1:Hg19::chr13:76694533..76694542,+#_5be4114e7d0131f457d60e83d77a108dp@chr13:76694533..76694542, +
3.1e-50FFCP PHASE2:Hg19::chr2:241625540..241625541,+#_5be4114e7d0131f457d60e83d77a108dp14@ENST00000407635
3.1e-50FFCP PHASE1:Hg19::chr10:129703392..129703416,+#_5be4114e7d0131f457d60e83d77a108dp@chr10:129703392..129703416, +
3.1e-50FFCP PHASE1:Hg19::chr9:17454062..17454088,+#_5be4114e7d0131f457d60e83d77a108dp@chr9:17454062..17454088, +
3.1e-50FFCP PHASE1:Hg19::chr7:111234799..111234807,-#_5be4114e7d0131f457d60e83d77a108dp@chr7:111234799..111234807, -
3.1e-50FFCP PHASE1:Hg19::chr4:185426203..185426209,-#_5be4114e7d0131f457d60e83d77a108dp@chr4:185426203..185426209, -
3.1e-50FFCP PHASE1:Hg19::chr3:86703174..86703181,-#_5be4114e7d0131f457d60e83d77a108dp@chr3:86703174..86703181, -
3.1e-50FFCP PHASE1:Hg19::chr2:220594730..220594748,+#_5be4114e7d0131f457d60e83d77a108dp2@ENST00000442416
3.1e-50FFCP PHASE1:Hg19::chr1:100110851..100110860,+#_5be4114e7d0131f457d60e83d77a108dp@chr1:100110851..100110860, +
3.1e-50FFCP PHASE2:Hg19::chr7:39018314..39018323,+#_5be4114e7d0131f457d60e83d77a108dp@chr7:39018314..39018323, +
3.1e-50FFCP PHASE2:Hg19::chr10:115999570..115999575,+#_5be4114e7d0131f457d60e83d77a108dp9@VWA2
3.1e-50FFCP PHASE1:Hg19::chr9:95426545..95426559,-#_5be4114e7d0131f457d60e83d77a108dp@chr9:95426545..95426559, -
3.1e-50FFCP PHASE1:Hg19::chr2:97626065..97626084,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:97626065..97626084, -
3.1e-50FFCP PHASE2:Hg19::chr9:17457123..17457129,+#_5be4114e7d0131f457d60e83d77a108dp@chr9:17457123..17457129, +
3.1e-50FFCP PHASE2:Hg19::chr8:73794113..73794122,+#_5be4114e7d0131f457d60e83d77a108dp@chr8:73794113..73794122, +
3.1e-50FFCP PHASE2:Hg19::chr14:60194318..60194325,-#_5be4114e7d0131f457d60e83d77a108dp22@RTN1
3.1e-50FFCP PHASE2:Hg19::chr11:20538015..20538023,-#_5be4114e7d0131f457d60e83d77a108dp@chr11:20538015..20538023, -
3.1e-50FFCP PHASE1:Hg19::chr8:98080543..98080550,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:98080543..98080550, -
3.1e-50FFCP PHASE1:Hg19::chr14:57127856..57127863,+#_5be4114e7d0131f457d60e83d77a108dp@chr14:57127856..57127863, +
3.1e-50FFCP PHASE1:Hg19::chr11:73475071..73475076,-#_5be4114e7d0131f457d60e83d77a108dp@chr11:73475071..73475076, -
3.1e-50FFCP PHASE2:Hg19::chr17:39140424..39140431,-#_5be4114e7d0131f457d60e83d77a108dp4@KRT40
3.1e-50FFCP PHASE1:Hg19::chrX:154251771..154251775,-#_5be4114e7d0131f457d60e83d77a108dp@chrX:154251771..154251775, -
3.1e-50FFCP PHASE1:Hg19::chr7:26590563..26590574,-#_5be4114e7d0131f457d60e83d77a108dp@chr7:26590563..26590574, -
3.1e-50FFCP PHASE2:Hg19::chrX:10852011..10852021,-#_5be4114e7d0131f457d60e83d77a108dp27@MID1
3.1e-50FFCP PHASE2:Hg19::chr12:41186960..41186982,-#_5be4114e7d0131f457d60e83d77a108dp@chr12:41186960..41186982, -
3.1e-50FFCP PHASE1:Hg19::chr2:208001650..208001675,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:208001650..208001675, -
3.1e-50FFCP PHASE1:Hg19::chr2:130564567..130564572,-#_5be4114e7d0131f457d60e83d77a108dp2@LOC100131048
3.1e-50FFCP PHASE2:Hg19::chr6:154858754..154858762,+#_5be4114e7d0131f457d60e83d77a108dp@chr6:154858754..154858762, +
3.1e-50FFCP PHASE2:Hg19::chr18:37331745..37331763,-#_5be4114e7d0131f457d60e83d77a108dp@chr18:37331745..37331763, -
3.1e-50FFCP PHASE1:Hg19::chr5:134915254..134915270,-#_5be4114e7d0131f457d60e83d77a108dp3@CXCL14
3.1e-50FFCP PHASE2:Hg19::chr13:25269076..25269105,-#_5be4114e7d0131f457d60e83d77a108dp@chr13:25269076..25269105, -
3.1e-50FFCP PHASE2:Hg19::chr12:54535470..54535475,+#_5be4114e7d0131f457d60e83d77a108dp@chr12:54535470..54535475, +
3.1e-50FFCP PHASE1:Hg19::chr7:79840127..79840130,+#_5be4114e7d0131f457d60e83d77a108dp@chr7:79840127..79840130, +

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