FF:10018-101C9: Difference between revisions

Latest revision as of 12:14, 3 June 2020

Name:	liver, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10624
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	liver
dev stage	64,69,70 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Ambion
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	0910061 -9
catalog number	Cat:AM6000 Lot:0910061 -9
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005542

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10624		CAGE		DRX008674		DRR009546

Accession ID Hg19

Library id		BAM		CTSS
CNhs10624		DRZ000971		DRZ002356

Accession ID Hg38

Library id		BAM		CTSS
CNhs10624		DRZ012321		DRZ013706

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0738
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.453
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0.766
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.239
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0594
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.112
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-7.027507e-4
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.365
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.112
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.521
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0.792
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.461
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0.0113
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.337
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.0594
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.112
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.925
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.215
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.239
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0594
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.00295
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.582
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.351
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.708
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.307
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.239
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0594
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0.971
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0594
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.112
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.00163
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.158
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10624

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.452
MA0003.1	MA0003.1	0.00866
MA0004.1	MA0004.1	0.586
MA0006.1	MA0006.1	0.112
MA0007.1	MA0007.1	0.0247
MA0009.1	MA0009.1	0.326
MA0014.1	MA0014.1	0.579
MA0017.1	MA0017.1	7.6359e-27
MA0018.2	MA0018.2	0.0103
MA0019.1	MA0019.1	0.246
MA0024.1	MA0024.1	0.0128
MA0025.1	MA0025.1	0.331
MA0027.1	MA0027.1	0.723
MA0028.1	MA0028.1	0.104
MA0029.1	MA0029.1	0.357
MA0030.1	MA0030.1	3.63931e-4
MA0031.1	MA0031.1	0.00213
MA0035.2	MA0035.2	1.76772e-4
MA0038.1	MA0038.1	0.735
MA0039.2	MA0039.2	0.414
MA0040.1	MA0040.1	0.218
MA0041.1	MA0041.1	0.113
MA0042.1	MA0042.1	0.547
MA0043.1	MA0043.1	0.541
MA0046.1	MA0046.1	7.40142e-92
MA0047.2	MA0047.2	2.46454e-8
MA0048.1	MA0048.1	0.331
MA0050.1	MA0050.1	0.543
MA0051.1	MA0051.1	0.231
MA0052.1	MA0052.1	0.715
MA0055.1	MA0055.1	0.553
MA0057.1	MA0057.1	0.0914
MA0058.1	MA0058.1	0.365
MA0059.1	MA0059.1	0.131
MA0060.1	MA0060.1	0.0124
MA0061.1	MA0061.1	0.412
MA0062.2	MA0062.2	0.00799
MA0065.2	MA0065.2	2.52696e-14
MA0066.1	MA0066.1	0.0613
MA0067.1	MA0067.1	0.0337
MA0068.1	MA0068.1	0.201
MA0069.1	MA0069.1	0.337
MA0070.1	MA0070.1	0.278
MA0071.1	MA0071.1	0.0389
MA0072.1	MA0072.1	0.0132
MA0073.1	MA0073.1	0.588
MA0074.1	MA0074.1	0.0956
MA0076.1	MA0076.1	0.0481
MA0077.1	MA0077.1	0.337
MA0078.1	MA0078.1	0.677
MA0079.2	MA0079.2	0.356
MA0080.2	MA0080.2	0.0307
MA0081.1	MA0081.1	0.259
MA0083.1	MA0083.1	0.605
MA0084.1	MA0084.1	0.785
MA0087.1	MA0087.1	0.284
MA0088.1	MA0088.1	0.68
MA0090.1	MA0090.1	0.695
MA0091.1	MA0091.1	0.782
MA0092.1	MA0092.1	0.239
MA0093.1	MA0093.1	0.51
MA0099.2	MA0099.2	7.11106e-8
MA0100.1	MA0100.1	0.24
MA0101.1	MA0101.1	0.0532
MA0102.2	MA0102.2	0.393
MA0103.1	MA0103.1	0.00495
MA0104.2	MA0104.2	0.987
MA0105.1	MA0105.1	0.792
MA0106.1	MA0106.1	0.889
MA0107.1	MA0107.1	0.0758
MA0108.2	MA0108.2	0.108
MA0111.1	MA0111.1	0.826
MA0112.2	MA0112.2	3.08069e-6
MA0113.1	MA0113.1	0.0939
MA0114.1	MA0114.1	3.14159e-25
MA0115.1	MA0115.1	9.48278e-11
MA0116.1	MA0116.1	0.00888
MA0117.1	MA0117.1	0.746
MA0119.1	MA0119.1	0.21
MA0122.1	MA0122.1	0.454
MA0124.1	MA0124.1	0.787
MA0125.1	MA0125.1	0.521
MA0131.1	MA0131.1	0.233
MA0135.1	MA0135.1	0.47
MA0136.1	MA0136.1	0.018
MA0137.2	MA0137.2	3.12049e-5
MA0138.2	MA0138.2	0.064
MA0139.1	MA0139.1	0.266
MA0140.1	MA0140.1	0.139
MA0141.1	MA0141.1	1.63627e-6
MA0142.1	MA0142.1	0.0851
MA0143.1	MA0143.1	0.383
MA0144.1	MA0144.1	6.12565e-4
MA0145.1	MA0145.1	0.144
MA0146.1	MA0146.1	0.125
MA0147.1	MA0147.1	0.967
MA0148.1	MA0148.1	2.36461e-5
MA0149.1	MA0149.1	0.531
MA0150.1	MA0150.1	0.591
MA0152.1	MA0152.1	7.1364e-5
MA0153.1	MA0153.1	3.46492e-46
MA0154.1	MA0154.1	0.084
MA0155.1	MA0155.1	0.107
MA0156.1	MA0156.1	0.183
MA0157.1	MA0157.1	0.0183
MA0159.1	MA0159.1	4.28532e-5
MA0160.1	MA0160.1	2.03708e-4
MA0162.1	MA0162.1	0.325
MA0163.1	MA0163.1	0.134
MA0164.1	MA0164.1	0.444
MA0258.1	MA0258.1	0.00242
MA0259.1	MA0259.1	0.315

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10624

Novel motif	Logo	P-value
1	1	0.212
10	10	0.721
100	100	0.506
101	101	0.674
102	102	0.202
103	103	0.0523
104	104	0.659
105	105	0.969
106	106	0.0121
107	107	0.0122
108	108	0.483
109	109	0.176
11	11	0.243
110	110	0.338
111	111	0.593
112	112	0.0179
113	113	0.499
114	114	0.129
115	115	0.526
116	116	0.363
117	117	0.918
118	118	0.49
119	119	0.0767
12	12	0.579
120	120	0.862
121	121	0.304
122	122	0.757
123	123	0.0299
124	124	0.2
125	125	0.197
126	126	0.173
127	127	0.679
128	128	0.142
129	129	0.216
13	13	0.119
130	130	0.27
131	131	0.914
132	132	0.381
133	133	0.23
134	134	0.956
135	135	0.212
136	136	0.828
137	137	0.364
138	138	0.768
139	139	0.873
14	14	0.879
140	140	0.655
141	141	0.17
142	142	0.499
143	143	0.145
144	144	0.389
145	145	0.309
146	146	0.0175
147	147	0.948
148	148	0.0902
149	149	0.0279
15	15	0.306
150	150	0.53
151	151	0.382
152	152	0.0568
153	153	0.825
154	154	0.169
155	155	0.0555
156	156	0.972
157	157	0.403
158	158	0.483
159	159	0.979
16	16	0.217
160	160	0.286
161	161	0.98
162	162	0.401
163	163	0.807
164	164	0.814
165	165	0.0164
166	166	0.854
167	167	0.799
168	168	0.476
169	169	0.0034
17	17	0.295
18	18	0.73
19	19	0.016
2	2	0.19
20	20	0.831
21	21	0.0921
22	22	0.0737
23	23	0.159
24	24	0.524
25	25	0.897
26	26	0.156
27	27	0.315
28	28	0.909
29	29	0.572
3	3	0.453
30	30	0.256
31	31	0.301
32	32	0.339
33	33	0.338
34	34	0.311
35	35	0.37
36	36	0.369
37	37	0.3
38	38	0.325
39	39	0.113
4	4	0.139
40	40	0.0571
41	41	0.328
42	42	0.629
43	43	0.197
44	44	5.13928e-4
45	45	0.176
46	46	0.308
47	47	0.476
48	48	0.34
49	49	0.307
5	5	0.242
50	50	0.507
51	51	0.69
52	52	0.0857
53	53	0.713
54	54	0.47
55	55	0.776
56	56	0.61
57	57	0.702
58	58	0.325
59	59	0.054
6	6	0.176
60	60	0.0507
61	61	0.435
62	62	0.264
63	63	0.204
64	64	0.618
65	65	0.14
66	66	0.195
67	67	0.135
68	68	0.772
69	69	0.801
7	7	0.0935
70	70	0.426
71	71	0.181
72	72	0.151
73	73	0.104
74	74	0.986
75	75	0.559
76	76	0.336
77	77	0.00975
78	78	0.147
79	79	0.895
8	8	0.0751
80	80	0.48
81	81	0.695
82	82	0.266
83	83	0.803
84	84	0.334
85	85	0.0455
86	86	0.343
87	87	0.336
88	88	0.542
89	89	0.0765
9	9	0.581
90	90	0.653
91	91	0.388
92	92	0.196
93	93	0.446
94	94	0.26
95	95	0.572
96	96	0.236
97	97	0.29
98	98	0.91
99	99	0.0955

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10624

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010018 human liver - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002107 (liver)
0002100 (trunk)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010018 (human liver - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005542
+|accession_numbers=CAGE;DRX008674;DRR009546;DRZ000971;DRZ002356;DRZ012321;DRZ013706
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002107,UBERON:0002100,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!3.84!6880.19!SEBOX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!3.09!1217.85!SEBOX;;chr19:4153613..4153652,+!p1@CREB3L3!2.80!629.00!CREB3L3;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!2.74!544.44!SEBOX;;chr1:214161272..214161322,+!p1@PROX1!2.19!212.35!PROX1;;chr15:53082521..53082549,-!p1@ONECUT1!2.00!99.66!ONECUT1;;chr19:50432453..50432468,+!p1@ATF5!1.96!4639.55!ATF5;;chr7:73038839..73038862,-!p1@MLXIPL!1.93!83.83!MLXIPL;;chr12:100867653..100867677,+!p2@NR1H4!1.87!73.42!NR1H4;;chr1:27240455..27240474,-!p1@NR0B2!1.86!71.08!NR0B2;;chr20:43029862..43029900,+!p1@HNF4A!1.82!65.80!HNF4A;;chr12:100867627..100867652,+!p1@NR1H4!1.80!62.58!NR1H4;;chr17:53344945..53344977,+!p2@HLF!1.75!55.40!HLF;;chr1:201979743..201979762,+!p1@ELF3!1.74!54.22!ELF3;;chr1:151804244..151804310,-!p1@RORC!1.72!52.03!RORC;;chr19:50435736..50435781,+!p3@ATF5!1.66!61.11!ATF5;;chr19:4153719..4153730,+!p2@CREB3L3!1.65!43.38!CREB3L3;;chrX:66763856..66763896,+!p1@AR!1.64!60.38!AR;;chr14:38064429..38064486,-!p1@FOXA1!1.64!42.65!FOXA1;;chr19:46367576..46367592,+!p1@FOXA3!1.61!39.42!FOXA3;;chr8:11561684..11561751,+!p1@GATA4!1.61!39.28!GATA4;;chr17:53344980..53345011,+!p3@HLF!1.57!36.20!HLF;;chr19:33793430..33793447,-!p1@CEBPA!1.54!136.15!CEBPA;;chr1:201979703..201979721,+!p2@ELF3!1.52!31.80!ELF3;;chr1:199996733..199996781,+!p1@NR5A2!1.51!31.36!NR5A2;;chr8:76319876..76319926,+!p1@HNF4G!1.49!29.90!HNF4G;;chrX:131547625..131547644,-!p4@MBNL3!1.49!29.90!MBNL3;;chr12:100897130..100897149,+!p3@NR1H4!1.45!27.11!NR1H4;;chr1:161208013..161208038,-!p1@NR1I3!1.42!25.35!NR1I3;;chr16:51185318..51185348,-!p2@SALL1!1.42!25.21!SALL1;;chr11:47400078..47400106,-!p1@SPI1!1.41!24.62!SPI1;;chr20:22564895..22564910,-!p1@FOXA2!1.39!23.74!FOXA2;;chr2:85981107..85981120,+!p3@ATOH8!1.38!22.86!ATOH8;;chr3:126076242..126076257,-!p1@KLF15!1.32!24.91!KLF15;;chr17:26694979..26695007,-!p4@SEBOX!1.31!19.34!SEBOX;;chr20:62680984..62680999,-!p1@SOX18!1.29!24.18!SOX18;;chr17:53342311..53342400,+!p1@HLF!1.28!20.66!HLF;;chr6:126240380..126240430,+!p2@NCOA7!1.27!45.14!NCOA7;;chr17:15942934..15942957,-!p5@NCOR1!1.27!17.73!NCOR1;;chr8:71316428..71316459,-!p2@NCOA2!1.26!28.72!NCOA2;;chr4:174451370..174451387,-!p1@HAND2!1.26!17.15!HAND2;;chr3:126073018..126073036,-!p3@KLF15!1.26!17.00!KLF15;;chr2:46524897..46524911,+!p2@EPAS1!1.25!46.02!EPAS1;;chr16:85932760..85932775,+!p1@IRF8!1.25!16.85!IRF8;;chr1:161207986..161207998,-!p2@NR1I3!1.25!16.71!NR1I3;;chr17:17726907..17726958,-!p2@SREBF1!1.22!95.70!SREBF1;;chr1:209979467..209979494,-!p1@IRF6!1.20!16.56!IRF6;;chr7:97840743..97840786,+!p1@BHLHA15!1.20!14.95!BHLHA15;;chr15:60884706..60884743,-!p1@RORA!1.16!69.47!RORA;;chr1:199996702..199996732,+!p5@NR5A2!1.16!13.48!NR5A2;;chr21:39870339..39870443,-!p1@ERG!1.16!13.48!ERG;;chr6:134210243..134210257,+!p1@TCF21!1.14!12.90!TCF21;;chr9:137217986..137218049,+!p3@RXRA!1.13!35.91!RXRA;;chr9:22447422..22447483,+!p1@DMRTA1!1.13!12.46!DMRTA1;;chr1:214161328..214161348,+!p2@PROX1!1.13!12.46!PROX1;;chr19:50434005..50434020,+!p10@ATF5!1.11!12.02!ATF5;;chr22:29196433..29196445,-!p4@XBP1!1.10!12.90!XBP1;;chrX:66763914..66763933,+!p3@AR!1.10!11.72!AR;;chr1:214161358..214161377,+!p3@PROX1!1.09!11.28!PROX1;;chr10:94449703..94449718,+!p1@HHEX!1.08!42.94!HHEX;;chr2:68592406..68592424,+!p1@PLEK!1.08!10.99!PLEK;;chr11:113930425..113930471,+!p1@ZBTB16!1.07!15.53!ZBTB16;;chr3:126076264..126076305,-!p2@KLF15!1.07!14.95!KLF15;;chr20:43030002..43030028,+!p3@HNF4A!1.07!10.84!HNF4A;;chr20:42984330..42984364,+!p2@HNF4A!1.07!10.70!HNF4A;;chr17:26695013..26695024,-!p7@SEBOX!1.07!10.70!SEBOX;;chr16:79634624..79634642,-!p1@MAF!1.06!41.33!MAF;;chr1:161207964..161207975,-!p3@NR1I3!1.06!10.55!NR1I3;;chr12:100867736..100867750,+!p4@NR1H4!1.06!10.55!NR1H4;;chr6:126221034..126221056,+!p13@NCOA7!1.06!10.41!NCOA7;;chr20:22566120..22566136,-!p4@FOXA2!1.05!10.26!FOXA2;;chr18:55102628..55102646,+!p2@ONECUT2!1.05!10.26!ONECUT2;;chrX:131547596..131547609,-!p10@MBNL3!1.05!10.26!MBNL3;;chr18:55102598..55102623,+!p1@ONECUT2!1.05!10.11!ONECUT2;;chr1:61548225..61548299,+!p1@NFIA!1.04!133.07!NFIA;;chr6:391743..391759,+!p1@IRF4!1.02!9.53!IRF4;;chr11:47279504..47279563,+!p1@NR1H3!1.01!21.40!NR1H3;;chr22:29196547..29196563,-!p2@XBP1!1.00!333.70!XBP1;;chr17:36105042..36105060,-!p1@HNF1B!1.00!9.09!HNF1B;;chr19:35760698..35760738,+!p8@USF2!1.00!9.09!USF2;;chr20:62365971..62365986,+!p5@ZGPAT!1.00!9.09!ZGPAT;;chr11:113930291..113930339,+!p2@ZBTB16!0.99!14.66!ZBTB16;;chr17:26694940..26694949,-!p6@SEBOX!0.99!8.79!SEBOX;;chr19:50435673..50435690,+!p8@ATF5!0.98!8.65!ATF5;;chr16:51185573..51185593,-!p3@SALL1!0.98!8.50!SALL1;;chr11:61520075..61520136,+!p1@C11orf9!0.97!18.17!C11orf9;;chr6:126240356..126240379,+!p7@NCOA7!0.97!10.26!NCOA7;;chr6:126240442..126240459,+!p4@NCOA7!0.96!10.41!NCOA7;;chr1:40105299..40105326,-!p1@HEYL!0.96!8.06!HEYL;;chr12:100867695..100867706,+!p6@NR1H4!0.96!8.06!NR1H4;;chr2:27357446..27357475,-!p2@PREB!0.95!28.28!PREB;;chr1:161736038..161736056,+!p4@ATF6!0.94!18.76!ATF6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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002107;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002423;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009854
 |ffid_belonging_in_development=UBERON:0001041,UBERON:0002532,UBERON:0006595,UBERON:0003104,UBERON:0004161,UBERON:0009497,UBERON:0010316
 |fonse_cell_line=
@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/liver%252c%2520adult%252c%2520pool1.CNhs10624.10018-101C9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/liver%252c%2520adult%252c%2520pool1.CNhs10624.10018-101C9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/liver%252c%2520adult%252c%2520pool1.CNhs10624.10018-101C9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/liver%252c%2520adult%252c%2520pool1.CNhs10624.10018-101C9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/liver%252c%2520adult%252c%2520pool1.CNhs10624.10018-101C9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10018-101C9
 |is_a=EFO:0002091;;FF:0010018
 |is_obsolete=
+|library_id=CNhs10624
+|library_id_phase_based=2:CNhs10624
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10018
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10018
 |name=liver, adult, pool1
 |namespace=FANTOM5
@@ Line 46: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10624,LSID657,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 63: / Line 79: @@
 |rna_weight_ug=10
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+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 84: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10018-101C9;search_select_hide=table117:FF:10018-101C9
 }}

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FF:10018-101C9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:14, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0