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(Created page with "{{f5samples |id=FF:10027-101D9 |name=thymus, adult, pool1 |sample_id=10027 |rna_tube_id=101D9 |rna_box=101 |rna_position=D9 |sample_cell_lot=NA |sample_cell_catalog=NA...")
 
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{{f5samples
{{f5samples
|id=FF:10027-101D9
|DRA_sample_Accession=CAGE@SAMD00005063
|name=thymus, adult, pool1
|accession_numbers=CAGE;DRX008745;DRR009617;DRZ001042;DRZ002427;DRZ012392;DRZ013777
|sample_id=10027
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002370,UBERON:0000479,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0004177,UBERON:0005057,UBERON:0002530,UBERON:0005058,UBERON:0010317,UBERON:0000153,UBERON:0002390,UBERON:0000949,UBERON:0002193,UBERON:0002405,UBERON:0009113
|rna_tube_id=101D9
|rna_box=101
|rna_position=D9
|sample_cell_lot=NA
|sample_cell_catalog=NA
|sample_company=Ambion
|rna_lot_number=0910061 -18
|rna_catalog_number=Cat:AM6000 Lot:0910061 -18
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=0.5,0.5,0.83 years old infant
|sample_tissue=thymus
|sample_donor(cell lot)=3 pool
|sample_sex=male
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=normal
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0
|rna_weight_ug=10.00000
|rna_concentration=
|sample_note=
|profile_hcage=CNhs10633,LSID657,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000065,UBERON:0000072,UBERON:0000077,UBERON:0000078,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000490,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0000974,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001042,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0001557,UBERON:0002050,UBERON:0002193,UBERON:0002342,UBERON:0002346,UBERON:0002368,UBERON:0002370,UBERON:0002390,UBERON:0002405,UBERON:0002530,UBERON:0002532,UBERON:0003075,UBERON:0003104,UBERON:0003295,UBERON:0003351,UBERON:0003408,UBERON:0003929,UBERON:0004119,UBERON:0004120,UBERON:0004121,UBERON:0004177,UBERON:0004185,UBERON:0004807,UBERON:0004921,UBERON:0005057,UBERON:0005058,UBERON:0005291,UBERON:0005423,UBERON:0005428,UBERON:0005434,UBERON:0005562,UBERON:0005911,UBERON:0006562,UBERON:0006598,UBERON:0007023,UBERON:0007026,UBERON:0007284,UBERON:0007690,UBERON:0009113,UBERON:0009142,UBERON:0009145
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010027
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0006603,UBERON:0010316
|fonse_cell_line=
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|fonse_cell_line_closure=
Line 67: Line 41:
|fonse_treatment=
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|fonse_treatment_closure=
|fonse_treatment_closure=
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thymus%252c%2520adult%252c%2520pool1.CNhs10633.10027-101D9.hg19.nobarcode.rdna.fa.gz
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|id=FF:10027-101D9
|is_a=EFO:0002091;;FF:0010027
|is_obsolete=
|library_id=CNhs10633
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|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10027
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10027
|name=thymus, adult, pool1
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|rna_box=101
|rna_catalog_number=Cat:AM6000 Lot:0910061 -18
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0
|rna_lot_number=0910061 -18
|rna_od260/230=
|rna_od260/280=
|rna_position=D9
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=101D9
|rna_weight_ug=10
|sample_age=
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Ambion
|sample_description=
|sample_dev_stage=0.5,0.5,0.83 years old infant
|sample_disease=normal
|sample_donor(cell lot)=3 pool
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.18507590708085e-262!GO:0043226;organelle;5.48364766046804e-219!GO:0043227;membrane-bound organelle;1.74893703553953e-218!GO:0043229;intracellular organelle;1.74893703553953e-218!GO:0043231;intracellular membrane-bound organelle;4.22672763983783e-218!GO:0005634;nucleus;4.43782270271068e-143!GO:0005737;cytoplasm;5.4424296209068e-140!GO:0044422;organelle part;1.2168497578516e-130!GO:0044446;intracellular organelle part;5.61009793372027e-129!GO:0032991;macromolecular complex;3.08276532031223e-103!GO:0043170;macromolecule metabolic process;4.66000233758386e-103!GO:0044238;primary metabolic process;4.71987560008391e-97!GO:0044237;cellular metabolic process;2.37430443938383e-96!GO:0005515;protein binding;1.7235712737379e-95!GO:0044428;nuclear part;1.75876137381896e-92!GO:0043283;biopolymer metabolic process;1.62413886473902e-82!GO:0044444;cytoplasmic part;5.08032030974631e-82!GO:0003723;RNA binding;1.0823776038115e-74!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.02500182580615e-72!GO:0030529;ribonucleoprotein complex;4.00316751845209e-69!GO:0043233;organelle lumen;2.4622863898702e-68!GO:0031974;membrane-enclosed lumen;2.4622863898702e-68!GO:0010467;gene expression;4.88053774659606e-65!GO:0043234;protein complex;3.86454969462966e-58!GO:0006259;DNA metabolic process;6.04998004634487e-55!GO:0031981;nuclear lumen;5.2516128942988e-53!GO:0003676;nucleic acid binding;1.3695091360782e-52!GO:0016043;cellular component organization and biogenesis;1.38055710520109e-49!GO:0006396;RNA processing;1.00397810655622e-47!GO:0016071;mRNA metabolic process;3.16256519799876e-46!GO:0033036;macromolecule localization;6.2245197054665e-44!GO:0019538;protein metabolic process;2.49158995325533e-42!GO:0015031;protein transport;3.52650014574365e-41!GO:0006412;translation;2.02371833141479e-40!GO:0006996;organelle organization and biogenesis;2.66938600476432e-40!GO:0008104;protein localization;1.14622756133862e-39!GO:0016070;RNA metabolic process;1.42311421246154e-39!GO:0045184;establishment of protein localization;6.06867888124761e-39!GO:0008380;RNA splicing;6.1734072797187e-39!GO:0044267;cellular protein metabolic process;1.29576235630435e-38!GO:0006397;mRNA processing;2.38315898503982e-38!GO:0044260;cellular macromolecule metabolic process;5.6332297689484e-38!GO:0043228;non-membrane-bound organelle;2.29691100770377e-37!GO:0043232;intracellular non-membrane-bound organelle;2.29691100770377e-37!GO:0005654;nucleoplasm;2.75757824952005e-37!GO:0065003;macromolecular complex assembly;1.31258778457314e-35!GO:0007049;cell cycle;4.12258313312918e-35!GO:0005739;mitochondrion;4.37567832892073e-35!GO:0005840;ribosome;1.70293476449447e-34!GO:0046907;intracellular transport;5.33304223913794e-33!GO:0022607;cellular component assembly;4.25037781745178e-32!GO:0031967;organelle envelope;1.17880482210271e-31!GO:0031975;envelope;2.53486116202018e-31!GO:0005829;cytosol;5.22870388943782e-31!GO:0031090;organelle membrane;1.95857029635318e-30!GO:0005694;chromosome;2.26149434763455e-30!GO:0051276;chromosome organization and biogenesis;4.69584597895021e-30!GO:0003735;structural constituent of ribosome;4.77937171182013e-30!GO:0044451;nucleoplasm part;4.27229154243939e-29!GO:0005681;spliceosome;9.03783449813009e-29!GO:0006886;intracellular protein transport;3.79802062522073e-28!GO:0044427;chromosomal part;4.74804572513516e-28!GO:0033279;ribosomal subunit;5.74391989583822e-27!GO:0022402;cell cycle process;1.43611872587664e-26!GO:0009059;macromolecule biosynthetic process;2.87812956216131e-26!GO:0044429;mitochondrial part;2.90815575502977e-25!GO:0000166;nucleotide binding;2.96375025239825e-25!GO:0050794;regulation of cellular process;3.10116502910883e-25!GO:0000278;mitotic cell cycle;5.52060515037795e-25!GO:0006974;response to DNA damage stimulus;1.50589883353598e-24!GO:0051641;cellular localization;2.1887558664511e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.1887558664511e-24!GO:0051649;establishment of cellular localization;2.567425596622e-24!GO:0006512;ubiquitin cycle;3.97072383016187e-24!GO:0006325;establishment and/or maintenance of chromatin architecture;1.20070852505275e-23!GO:0008134;transcription factor binding;2.79800418440983e-23!GO:0006323;DNA packaging;5.87398355495162e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.56115369318307e-22!GO:0006281;DNA repair;1.98254753442568e-21!GO:0022403;cell cycle phase;2.18968560621854e-21!GO:0050789;regulation of biological process;1.54436152355183e-20!GO:0044445;cytosolic part;2.94272820269335e-20!GO:0044249;cellular biosynthetic process;6.08728397762349e-20!GO:0000087;M phase of mitotic cell cycle;7.23478939650734e-20!GO:0043285;biopolymer catabolic process;1.23358696538395e-19!GO:0007067;mitosis;1.83425776538667e-19!GO:0044265;cellular macromolecule catabolic process;2.21033005185989e-19!GO:0012501;programmed cell death;2.22357587906476e-19!GO:0006915;apoptosis;2.44033808609985e-19!GO:0043412;biopolymer modification;7.28989340650744e-19!GO:0051301;cell division;8.89861661036479e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;8.89861661036479e-19!GO:0019941;modification-dependent protein catabolic process;9.42786857870055e-19!GO:0043632;modification-dependent macromolecule catabolic process;9.42786857870055e-19!GO:0016462;pyrophosphatase activity;1.49597022568585e-18!GO:0006511;ubiquitin-dependent protein catabolic process;1.51413396154617e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.63875652746119e-18!GO:0019222;regulation of metabolic process;1.88556165636512e-18!GO:0016874;ligase activity;2.20828870355705e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;2.2454189951368e-18!GO:0032553;ribonucleotide binding;2.612130370978e-18!GO:0032555;purine ribonucleotide binding;2.612130370978e-18!GO:0017111;nucleoside-triphosphatase activity;3.58821540333991e-18!GO:0005635;nuclear envelope;3.78521498696678e-18!GO:0044257;cellular protein catabolic process;3.84900451997886e-18!GO:0006260;DNA replication;5.0526830802069e-18!GO:0008219;cell death;7.03561431135771e-18!GO:0016265;death;7.03561431135771e-18!GO:0009058;biosynthetic process;7.91583539762515e-18!GO:0000279;M phase;1.0560645402765e-17!GO:0043687;post-translational protein modification;1.10471804728151e-17!GO:0031965;nuclear membrane;1.56322087798226e-17!GO:0019866;organelle inner membrane;3.90356961677487e-17!GO:0017076;purine nucleotide binding;4.53427619878349e-17!GO:0009719;response to endogenous stimulus;4.90099784736481e-17!GO:0009057;macromolecule catabolic process;8.52136924917215e-17!GO:0005524;ATP binding;9.20040897972292e-17!GO:0016604;nuclear body;1.0652740069496e-16!GO:0006119;oxidative phosphorylation;1.14868353613844e-16!GO:0022618;protein-RNA complex assembly;1.50336614966279e-16!GO:0006464;protein modification process;1.52516755012586e-16!GO:0016568;chromatin modification;1.69038323210424e-16!GO:0000785;chromatin;2.17576171989329e-16!GO:0030163;protein catabolic process;3.22834109208226e-16!GO:0032559;adenyl ribonucleotide binding;5.63092452566981e-16!GO:0005740;mitochondrial envelope;6.59431691783853e-16!GO:0031323;regulation of cellular metabolic process;1.55258116807668e-15!GO:0006913;nucleocytoplasmic transport;2.0480411984395e-15!GO:0044453;nuclear membrane part;3.50177047635212e-15!GO:0015935;small ribosomal subunit;4.37519268992928e-15!GO:0031966;mitochondrial membrane;4.83736669306392e-15!GO:0048770;pigment granule;4.83966487457021e-15!GO:0042470;melanosome;4.83966487457021e-15!GO:0051169;nuclear transport;7.60298471991246e-15!GO:0006333;chromatin assembly or disassembly;7.68154640898391e-15!GO:0003712;transcription cofactor activity;7.74473884158745e-15!GO:0005743;mitochondrial inner membrane;7.87091154497327e-15!GO:0005730;nucleolus;9.43139268810677e-15!GO:0030554;adenyl nucleotide binding;1.43943910096269e-14!GO:0000502;proteasome complex (sensu Eukaryota);2.72912744494616e-14!GO:0006605;protein targeting;3.06136133830609e-14!GO:0065004;protein-DNA complex assembly;3.62473805683784e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;4.41340407238163e-14!GO:0000375;RNA splicing, via transesterification reactions;4.41340407238163e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.41340407238163e-14!GO:0006350;transcription;7.79261460957731e-14!GO:0005643;nuclear pore;8.1604597348217e-14!GO:0065007;biological regulation;1.83872831708581e-13!GO:0006366;transcription from RNA polymerase II promoter;2.07640922008151e-13!GO:0008135;translation factor activity, nucleic acid binding;2.28986387026613e-13!GO:0016607;nuclear speck;2.3884428504582e-13!GO:0016887;ATPase activity;3.15226038063612e-13!GO:0004386;helicase activity;3.3525257185214e-13!GO:0010468;regulation of gene expression;3.9537299289324e-13!GO:0006403;RNA localization;4.56999541239715e-13!GO:0051726;regulation of cell cycle;4.59942209907056e-13!GO:0012505;endomembrane system;4.66314864360408e-13!GO:0042623;ATPase activity, coupled;4.90366681687107e-13!GO:0050657;nucleic acid transport;4.90366681687107e-13!GO:0051236;establishment of RNA localization;4.90366681687107e-13!GO:0050658;RNA transport;4.90366681687107e-13!GO:0015934;large ribosomal subunit;5.5508961149933e-13!GO:0000074;regulation of progression through cell cycle;6.58052743758005e-13!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.55927298176485e-13!GO:0042981;regulation of apoptosis;1.26233000241268e-12!GO:0044455;mitochondrial membrane part;1.51207746081897e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.62654335634978e-12!GO:0044248;cellular catabolic process;1.66986363715798e-12!GO:0008639;small protein conjugating enzyme activity;1.72909116763276e-12!GO:0004842;ubiquitin-protein ligase activity;2.88327175934453e-12!GO:0043067;regulation of programmed cell death;3.00558366723882e-12!GO:0031980;mitochondrial lumen;3.26982553937415e-12!GO:0005759;mitochondrial matrix;3.26982553937415e-12!GO:0048193;Golgi vesicle transport;3.33974775035259e-12!GO:0005746;mitochondrial respiratory chain;6.61523492161038e-12!GO:0019787;small conjugating protein ligase activity;8.35892372784957e-12!GO:0006457;protein folding;1.43392088407613e-11!GO:0003677;DNA binding;3.34568162258882e-11!GO:0051028;mRNA transport;3.57757355306978e-11!GO:0043566;structure-specific DNA binding;4.43557530171359e-11!GO:0032774;RNA biosynthetic process;5.39346714632562e-11!GO:0050136;NADH dehydrogenase (quinone) activity;6.36264913532007e-11!GO:0003954;NADH dehydrogenase activity;6.36264913532007e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.36264913532007e-11!GO:0006351;transcription, DNA-dependent;7.95719204224762e-11!GO:0003743;translation initiation factor activity;9.46630867585981e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.67040617201993e-11!GO:0046930;pore complex;1.28260487624775e-10!GO:0003697;single-stranded DNA binding;1.797538927754e-10!GO:0008026;ATP-dependent helicase activity;1.87114067523778e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.98518848642863e-10!GO:0045449;regulation of transcription;2.26369906175682e-10!GO:0048523;negative regulation of cellular process;3.02517627904215e-10!GO:0016192;vesicle-mediated transport;4.52996720868103e-10!GO:0008565;protein transporter activity;4.52996720868103e-10!GO:0006793;phosphorus metabolic process;5.79380285768923e-10!GO:0006796;phosphate metabolic process;5.79380285768923e-10!GO:0003713;transcription coactivator activity;6.75684401364755e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.35973149605911e-10!GO:0006334;nucleosome assembly;7.98808661687072e-10!GO:0065002;intracellular protein transport across a membrane;1.19186643716075e-09!GO:0016563;transcription activator activity;1.19750340947212e-09!GO:0031497;chromatin assembly;1.28513559849135e-09!GO:0017038;protein import;1.79141889886805e-09!GO:0006413;translational initiation;2.14182286804207e-09!GO:0005794;Golgi apparatus;2.34978723335613e-09!GO:0042775;organelle ATP synthesis coupled electron transport;2.39020054338633e-09!GO:0042773;ATP synthesis coupled electron transport;2.39020054338633e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.75800306932567e-09!GO:0016881;acid-amino acid ligase activity;2.84918299836556e-09!GO:0006446;regulation of translational initiation;3.2973481466292e-09!GO:0051082;unfolded protein binding;3.35259589346544e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.41417374339296e-09!GO:0051246;regulation of protein metabolic process;3.95686458359282e-09!GO:0030964;NADH dehydrogenase complex (quinone);4.15279807197961e-09!GO:0045271;respiratory chain complex I;4.15279807197961e-09!GO:0005747;mitochondrial respiratory chain complex I;4.15279807197961e-09!GO:0048519;negative regulation of biological process;4.68103433571572e-09!GO:0006461;protein complex assembly;4.81215889735931e-09!GO:0005819;spindle;5.4663457031468e-09!GO:0042254;ribosome biogenesis and assembly;5.61359630309195e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.95968780457883e-09!GO:0005813;centrosome;9.48692067263037e-09!GO:0006355;regulation of transcription, DNA-dependent;9.80330603294105e-09!GO:0015630;microtubule cytoskeleton;1.02439910526117e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.07096388894368e-08!GO:0006310;DNA recombination;1.2707159553197e-08!GO:0016310;phosphorylation;1.51293694594516e-08!GO:0005761;mitochondrial ribosome;1.51293694594516e-08!GO:0000313;organellar ribosome;1.51293694594516e-08!GO:0032446;protein modification by small protein conjugation;1.72992760739012e-08!GO:0006916;anti-apoptosis;3.18043776720399e-08!GO:0005815;microtubule organizing center;3.39849808438646e-08!GO:0043069;negative regulation of programmed cell death;3.56249381921856e-08!GO:0000775;chromosome, pericentric region;3.63114402356331e-08!GO:0016564;transcription repressor activity;4.09823187285303e-08!GO:0043066;negative regulation of apoptosis;4.10506582186458e-08!GO:0019899;enzyme binding;4.27804352319472e-08!GO:0006261;DNA-dependent DNA replication;4.97043233306274e-08!GO:0016567;protein ubiquitination;5.63460872133293e-08!GO:0009056;catabolic process;5.82261783837738e-08!GO:0019829;cation-transporting ATPase activity;6.08820270482171e-08!GO:0031324;negative regulation of cellular metabolic process;6.39103245134475e-08!GO:0005768;endosome;8.27486497795766e-08!GO:0051170;nuclear import;1.1172657603953e-07!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.14668789585343e-07!GO:0006606;protein import into nucleus;1.22414471137154e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.33438052411003e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.34177946151043e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.38692243778003e-07!GO:0005783;endoplasmic reticulum;1.52282907530264e-07!GO:0042110;T cell activation;1.72509667180228e-07!GO:0005839;proteasome core complex (sensu Eukaryota);2.25655448626941e-07!GO:0009259;ribonucleotide metabolic process;2.84400587155409e-07!GO:0006163;purine nucleotide metabolic process;3.68337425740042e-07!GO:0000245;spliceosome assembly;3.87935600614388e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.99360163276772e-07!GO:0006164;purine nucleotide biosynthetic process;4.44280481204197e-07!GO:0009060;aerobic respiration;5.73051750841073e-07!GO:0003682;chromatin binding;5.92039084435415e-07!GO:0004298;threonine endopeptidase activity;5.92039084435415e-07!GO:0000151;ubiquitin ligase complex;6.04689806796446e-07!GO:0005657;replication fork;6.24395239723965e-07!GO:0005667;transcription factor complex;6.34921551017508e-07!GO:0009892;negative regulation of metabolic process;7.63883730925496e-07!GO:0051329;interphase of mitotic cell cycle;7.81976113910755e-07!GO:0051168;nuclear export;7.88621624437067e-07!GO:0009260;ribonucleotide biosynthetic process;8.35530114254683e-07!GO:0051325;interphase;8.51650626444208e-07!GO:0016481;negative regulation of transcription;8.76828158571123e-07!GO:0016779;nucleotidyltransferase activity;9.21779031735046e-07!GO:0009150;purine ribonucleotide metabolic process;9.8155285101074e-07!GO:0015986;ATP synthesis coupled proton transport;1.04805327526006e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.04805327526006e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.15550389709195e-06!GO:0005793;ER-Golgi intermediate compartment;1.17911756616811e-06!GO:0044432;endoplasmic reticulum part;1.57461829648014e-06!GO:0016363;nuclear matrix;1.64415027215644e-06!GO:0003690;double-stranded DNA binding;1.65262603143719e-06!GO:0007059;chromosome segregation;1.83396637930191e-06!GO:0006950;response to stress;1.86513692008527e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.02160400950708e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.04166939609541e-06!GO:0006364;rRNA processing;2.04227810016917e-06!GO:0045333;cellular respiration;2.0460427776695e-06!GO:0048522;positive regulation of cellular process;2.20197463830042e-06!GO:0051427;hormone receptor binding;2.43687435885162e-06!GO:0007051;spindle organization and biogenesis;2.47364084975906e-06!GO:0016072;rRNA metabolic process;2.61479266919534e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.62763184877911e-06!GO:0016787;hydrolase activity;3.04105027065634e-06!GO:0008094;DNA-dependent ATPase activity;3.12727761257764e-06!GO:0000075;cell cycle checkpoint;3.55160543899578e-06!GO:0051186;cofactor metabolic process;3.57026376243964e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.65565600456769e-06!GO:0000786;nucleosome;4.78636560857151e-06!GO:0030120;vesicle coat;5.04165667074167e-06!GO:0030662;coated vesicle membrane;5.04165667074167e-06!GO:0048475;coated membrane;5.04210819732243e-06!GO:0030117;membrane coat;5.04210819732243e-06!GO:0035257;nuclear hormone receptor binding;5.04210819732243e-06!GO:0008270;zinc ion binding;5.23717967049446e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.61297088292886e-06!GO:0004812;aminoacyl-tRNA ligase activity;5.61297088292886e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.61297088292886e-06!GO:0042101;T cell receptor complex;5.89948226000743e-06!GO:0006099;tricarboxylic acid cycle;6.20098604546969e-06!GO:0046356;acetyl-CoA catabolic process;6.20098604546969e-06!GO:0007243;protein kinase cascade;6.20596031423892e-06!GO:0043623;cellular protein complex assembly;7.46457310735024e-06!GO:0006401;RNA catabolic process;8.0133461608293e-06!GO:0016469;proton-transporting two-sector ATPase complex;8.04025903189536e-06!GO:0046649;lymphocyte activation;8.06770600833013e-06!GO:0000323;lytic vacuole;8.21796429110446e-06!GO:0005764;lysosome;8.21796429110446e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;8.74371780126172e-06!GO:0006302;double-strand break repair;9.05798114128317e-06!GO:0005773;vacuole;1.11492285972916e-05!GO:0043065;positive regulation of apoptosis;1.2922165435338e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.29669253952617e-05!GO:0006613;cotranslational protein targeting to membrane;1.35981394629764e-05!GO:0003724;RNA helicase activity;1.43525625494824e-05!GO:0043038;amino acid activation;1.50880950709867e-05!GO:0006418;tRNA aminoacylation for protein translation;1.50880950709867e-05!GO:0043039;tRNA aminoacylation;1.50880950709867e-05!GO:0004674;protein serine/threonine kinase activity;1.55195794669572e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.72401654726515e-05!GO:0009615;response to virus;1.81361621582532e-05!GO:0006732;coenzyme metabolic process;1.82430753041977e-05!GO:0003714;transcription corepressor activity;1.97365146760058e-05!GO:0031982;vesicle;2.08638303878261e-05!GO:0005770;late endosome;2.10433589195536e-05!GO:0006402;mRNA catabolic process;2.12663738487938e-05!GO:0043068;positive regulation of programmed cell death;2.12889421891865e-05!GO:0001772;immunological synapse;2.33262282381585e-05!GO:0048518;positive regulation of biological process;2.38319506686126e-05!GO:0045786;negative regulation of progression through cell cycle;2.60106141319022e-05!GO:0045259;proton-transporting ATP synthase complex;2.6886372399928e-05!GO:0006084;acetyl-CoA metabolic process;2.75018125676964e-05!GO:0006754;ATP biosynthetic process;2.75018125676964e-05!GO:0006753;nucleoside phosphate metabolic process;2.75018125676964e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.82466928409529e-05!GO:0005789;endoplasmic reticulum membrane;2.83994425056013e-05!GO:0065009;regulation of a molecular function;2.91575264599764e-05!GO:0009055;electron carrier activity;2.96472796335118e-05!GO:0006399;tRNA metabolic process;3.32448246351424e-05!GO:0006352;transcription initiation;4.50814555029436e-05!GO:0051052;regulation of DNA metabolic process;5.14487002641265e-05!GO:0009142;nucleoside triphosphate biosynthetic process;5.83103550686336e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.83103550686336e-05!GO:0006612;protein targeting to membrane;6.42571628578952e-05!GO:0005798;Golgi-associated vesicle;6.78258556160229e-05!GO:0031410;cytoplasmic vesicle;7.07835279052368e-05!GO:0006917;induction of apoptosis;7.14398723365992e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.59797514404825e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.59797514404825e-05!GO:0046034;ATP metabolic process;7.79604886532524e-05!GO:0000776;kinetochore;9.08033041982292e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.08780149271412e-05!GO:0009141;nucleoside triphosphate metabolic process;9.37644450837543e-05!GO:0009199;ribonucleoside triphosphate metabolic process;0.000102322623385298!GO:0045321;leukocyte activation;0.000104021123439633!GO:0009109;coenzyme catabolic process;0.000104231134645559!GO:0030217;T cell differentiation;0.000104594175418837!GO:0007242;intracellular signaling cascade;0.000117385167764612!GO:0012502;induction of programmed cell death;0.000120116984744757!GO:0003678;DNA helicase activity;0.000122239845139932!GO:0048471;perinuclear region of cytoplasm;0.000124351836679641!GO:0005525;GTP binding;0.000128290954310424!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000131192381765847!GO:0009144;purine nucleoside triphosphate metabolic process;0.000131192381765847!GO:0045892;negative regulation of transcription, DNA-dependent;0.000135646209890529!GO:0031988;membrane-bound vesicle;0.000147843137102416!GO:0031252;leading edge;0.000149325406845432!GO:0004518;nuclease activity;0.000151424763844912!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000151578123623318!GO:0003729;mRNA binding;0.000154981176430543!GO:0007088;regulation of mitosis;0.000154981176430543!GO:0007264;small GTPase mediated signal transduction;0.000158331014497187!GO:0044440;endosomal part;0.000161985730618126!GO:0010008;endosome membrane;0.000161985730618126!GO:0003924;GTPase activity;0.00016332532116404!GO:0016197;endosome transport;0.000167808464582597!GO:0006417;regulation of translation;0.000177879890007355!GO:0007052;mitotic spindle organization and biogenesis;0.000187272527377669!GO:0008186;RNA-dependent ATPase activity;0.000221380317310669!GO:0007093;mitotic cell cycle checkpoint;0.000224513548991279!GO:0003684;damaged DNA binding;0.000226333857628583!GO:0030695;GTPase regulator activity;0.000235102014110571!GO:0006338;chromatin remodeling;0.000235102014110571!GO:0051252;regulation of RNA metabolic process;0.000259050900677577!GO:0006611;protein export from nucleus;0.000259057667707947!GO:0007265;Ras protein signal transduction;0.000271198721943294!GO:0051187;cofactor catabolic process;0.00031472039224686!GO:0003702;RNA polymerase II transcription factor activity;0.000315329201645921!GO:0016740;transferase activity;0.000336457557460874!GO:0005885;Arp2/3 protein complex;0.000338677315779823!GO:0030521;androgen receptor signaling pathway;0.00039987115409813!GO:0016023;cytoplasmic membrane-bound vesicle;0.000400011169087833!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00044076404097991!GO:0000228;nuclear chromosome;0.000453625622485476!GO:0044431;Golgi apparatus part;0.000637243623142612!GO:0004527;exonuclease activity;0.000677140095309081!GO:0043021;ribonucleoprotein binding;0.000681758283384646!GO:0016251;general RNA polymerase II transcription factor activity;0.000686158016346016!GO:0004004;ATP-dependent RNA helicase activity;0.000686158016346016!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000686158016346016!GO:0033673;negative regulation of kinase activity;0.000751818924503138!GO:0006469;negative regulation of protein kinase activity;0.000751818924503138!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000762475550262754!GO:0009117;nucleotide metabolic process;0.000793598808034197!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000795110993326157!GO:0003899;DNA-directed RNA polymerase activity;0.000801356771785882!GO:0000792;heterochromatin;0.000802680305300461!GO:0032508;DNA duplex unwinding;0.00082646248270922!GO:0032392;DNA geometric change;0.00082646248270922!GO:0051188;cofactor biosynthetic process;0.000834942007761476!GO:0008234;cysteine-type peptidase activity;0.000847524244169082!GO:0030518;steroid hormone receptor signaling pathway;0.000866155816820605!GO:0051251;positive regulation of lymphocyte activation;0.000891512551634713!GO:0042802;identical protein binding;0.000910007534064509!GO:0030098;lymphocyte differentiation;0.000922979152541716!GO:0005769;early endosome;0.00097356999708802!GO:0007010;cytoskeleton organization and biogenesis;0.000993147098871669!GO:0015631;tubulin binding;0.00106027038068165!GO:0002521;leukocyte differentiation;0.0010729285476102!GO:0006650;glycerophospholipid metabolic process;0.00108846324189596!GO:0006268;DNA unwinding during replication;0.00112401764008523!GO:0007005;mitochondrion organization and biogenesis;0.00116932150982182!GO:0000059;protein import into nucleus, docking;0.00118557695422388!GO:0032200;telomere organization and biogenesis;0.00120328499865265!GO:0000723;telomere maintenance;0.00120328499865265!GO:0032561;guanyl ribonucleotide binding;0.00121723561222137!GO:0019001;guanyl nucleotide binding;0.00121723561222137!GO:0005637;nuclear inner membrane;0.00121974323254128!GO:0006752;group transfer coenzyme metabolic process;0.00128157877796385!GO:0051348;negative regulation of transferase activity;0.00130025481637224!GO:0043488;regulation of mRNA stability;0.00130927167620673!GO:0043487;regulation of RNA stability;0.00130927167620673!GO:0005083;small GTPase regulator activity;0.00131555632090256!GO:0031326;regulation of cellular biosynthetic process;0.00133663840851379!GO:0006607;NLS-bearing substrate import into nucleus;0.00133663840851379!GO:0050870;positive regulation of T cell activation;0.00138956450243018!GO:0006891;intra-Golgi vesicle-mediated transport;0.00141359401056151!GO:0000082;G1/S transition of mitotic cell cycle;0.00145489290886689!GO:0030036;actin cytoskeleton organization and biogenesis;0.00148471050309341!GO:0050863;regulation of T cell activation;0.00153618433827875!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00159979632718857!GO:0046966;thyroid hormone receptor binding;0.00167219165992645!GO:0048468;cell development;0.00168705247566216!GO:0047485;protein N-terminus binding;0.0017470212182302!GO:0006405;RNA export from nucleus;0.00180611199943188!GO:0043414;biopolymer methylation;0.00187458073315371!GO:0050790;regulation of catalytic activity;0.00191371437884964!GO:0008047;enzyme activator activity;0.0019260219834017!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00195012910135711!GO:0006289;nucleotide-excision repair;0.00216563714578619!GO:0050851;antigen receptor-mediated signaling pathway;0.00217831890672328!GO:0030522;intracellular receptor-mediated signaling pathway;0.00222856526050631!GO:0050852;T cell receptor signaling pathway;0.00222856526050631!GO:0008139;nuclear localization sequence binding;0.00222897088662588!GO:0000819;sister chromatid segregation;0.00222897088662588!GO:0060090;molecular adaptor activity;0.0022463716875116!GO:0008276;protein methyltransferase activity;0.0022470109518715!GO:0002376;immune system process;0.00224860138942312!GO:0030384;phosphoinositide metabolic process;0.00230100029422536!GO:0035258;steroid hormone receptor binding;0.00230100029422536!GO:0044454;nuclear chromosome part;0.00242358167637992!GO:0000922;spindle pole;0.0024388996243431!GO:0009108;coenzyme biosynthetic process;0.00261207156197692!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00261625463941827!GO:0006284;base-excision repair;0.0026643710561637!GO:0000781;chromosome, telomeric region;0.00274366383887756!GO:0008654;phospholipid biosynthetic process;0.00280701757529152!GO:0005096;GTPase activator activity;0.00294255434287558!GO:0046914;transition metal ion binding;0.002944757137388!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.002944757137388!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.002944757137388!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.002944757137388!GO:0005774;vacuolar membrane;0.00295123012614437!GO:0032259;methylation;0.00299845963542913!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0031330674849857!GO:0043596;nuclear replication fork;0.00317690845866737!GO:0051235;maintenance of localization;0.00326564465598916!GO:0048500;signal recognition particle;0.00334114192671312!GO:0030097;hemopoiesis;0.00336766834940217!GO:0000070;mitotic sister chromatid segregation;0.00338651625378782!GO:0005762;mitochondrial large ribosomal subunit;0.00339574730092655!GO:0000315;organellar large ribosomal subunit;0.00339574730092655!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.00360070662996785!GO:0040029;regulation of gene expression, epigenetic;0.00360355322421305!GO:0016791;phosphoric monoester hydrolase activity;0.0037810196179241!GO:0016584;nucleosome positioning;0.0037810196179241!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00388917852546731!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00388917852546731!GO:0005048;signal sequence binding;0.00388917852546731!GO:0005684;U2-dependent spliceosome;0.00404246453153383!GO:0008632;apoptotic program;0.00426345323631083!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.00428462347483609!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0042972977760175!GO:0004003;ATP-dependent DNA helicase activity;0.00431986747757183!GO:0019843;rRNA binding;0.00439507177895575!GO:0043087;regulation of GTPase activity;0.00443187306593089!GO:0030118;clathrin coat;0.00453072831748184!GO:0045893;positive regulation of transcription, DNA-dependent;0.00460242338399044!GO:0005876;spindle microtubule;0.00462538219815728!GO:0016788;hydrolase activity, acting on ester bonds;0.00463868233770913!GO:0042393;histone binding;0.0049245501247332!GO:0002764;immune response-regulating signal transduction;0.0049245501247332!GO:0006383;transcription from RNA polymerase III promoter;0.0049784696050363!GO:0005765;lysosomal membrane;0.00506685759284848!GO:0018193;peptidyl-amino acid modification;0.00516000321105376!GO:0051249;regulation of lymphocyte activation;0.00521578706012363!GO:0031124;mRNA 3'-end processing;0.0052342617367976!GO:0050865;regulation of cell activation;0.00531577601840626!GO:0031577;spindle checkpoint;0.00549054674645067!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00550944018419711!GO:0045058;T cell selection;0.00552740346474354!GO:0002757;immune response-activating signal transduction;0.00583326480926437!GO:0045941;positive regulation of transcription;0.00609850399553532!GO:0009889;regulation of biosynthetic process;0.00611303523530839!GO:0031902;late endosome membrane;0.0061867336656032!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0064233498683271!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00643565991149381!GO:0008250;oligosaccharyl transferase complex;0.0065099766263351!GO:0046822;regulation of nucleocytoplasmic transport;0.00653181606498783!GO:0019904;protein domain specific binding;0.0065927825755483!GO:0019783;small conjugating protein-specific protease activity;0.00663625864713614!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00665707574098518!GO:0045047;protein targeting to ER;0.00665707574098518!GO:0004576;oligosaccharyl transferase activity;0.00667021328804537!GO:0030663;COPI coated vesicle membrane;0.00677124149693166!GO:0030126;COPI vesicle coat;0.00677124149693166!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00701399643340485!GO:0001775;cell activation;0.00711838399499887!GO:0003725;double-stranded RNA binding;0.00714501633481136!GO:0000910;cytokinesis;0.00734221817330357!GO:0004843;ubiquitin-specific protease activity;0.00743837195066138!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00760444755862154!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00768017494679375!GO:0015399;primary active transmembrane transporter activity;0.00768017494679375!GO:0000118;histone deacetylase complex;0.00782986372467111!GO:0030027;lamellipodium;0.00814595196939756!GO:0005791;rough endoplasmic reticulum;0.00815357336036236!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00819291004483783!GO:0050854;regulation of antigen receptor-mediated signaling pathway;0.00821542909383061!GO:0008312;7S RNA binding;0.00836118803220854!GO:0051920;peroxiredoxin activity;0.00837340013406604!GO:0030867;rough endoplasmic reticulum membrane;0.00858999674046954!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.00866081065012866!GO:0016569;covalent chromatin modification;0.00871782992185511!GO:0022415;viral reproductive process;0.00871782992185511!GO:0019900;kinase binding;0.00872797379851507!GO:0008287;protein serine/threonine phosphatase complex;0.00884295422318296!GO:0006892;post-Golgi vesicle-mediated transport;0.0089107203763044!GO:0006376;mRNA splice site selection;0.0089107203763044!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0089107203763044!GO:0016741;transferase activity, transferring one-carbon groups;0.00892956321995377!GO:0007004;telomere maintenance via telomerase;0.00894709359211557!GO:0030658;transport vesicle membrane;0.00917799712323729!GO:0048487;beta-tubulin binding;0.00920537849599418!GO:0005070;SH3/SH2 adaptor activity;0.00938621709001957!GO:0030029;actin filament-based process;0.0095361111336968!GO:0045045;secretory pathway;0.00984772188334659!GO:0008017;microtubule binding;0.0100071729181856!GO:0031072;heat shock protein binding;0.0100617160300955!GO:0000314;organellar small ribosomal subunit;0.0100715035504555!GO:0005763;mitochondrial small ribosomal subunit;0.0100715035504555!GO:0050856;regulation of T cell receptor signaling pathway;0.0104844956413171!GO:0008168;methyltransferase activity;0.0106398276440768!GO:0000123;histone acetyltransferase complex;0.0108538914145344!GO:0030137;COPI-coated vesicle;0.0110063863926598!GO:0044437;vacuolar part;0.0111129038194704!GO:0031625;ubiquitin protein ligase binding;0.0111129038194704!GO:0006414;translational elongation;0.0111129038194704!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0112397222951115!GO:0046474;glycerophospholipid biosynthetic process;0.0112397222951115!GO:0000209;protein polyubiquitination;0.0114040381822735!GO:0051338;regulation of transferase activity;0.011406314779145!GO:0006818;hydrogen transport;0.0115220739236273!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0115706487993392!GO:0015992;proton transport;0.0116821652152446!GO:0003711;transcription elongation regulator activity;0.011713197517384!GO:0004221;ubiquitin thiolesterase activity;0.0119510056348669!GO:0004721;phosphoprotein phosphatase activity;0.0119926968560679!GO:0016301;kinase activity;0.0120067531285092!GO:0002520;immune system development;0.0121128608700463!GO:0007006;mitochondrial membrane organization and biogenesis;0.0124301799558042!GO:0033116;ER-Golgi intermediate compartment membrane;0.0124661658594686!GO:0031123;RNA 3'-end processing;0.0124675055062326!GO:0030133;transport vesicle;0.0125554850696124!GO:0000018;regulation of DNA recombination;0.012618578314329!GO:0004722;protein serine/threonine phosphatase activity;0.0126757625725467!GO:0007034;vacuolar transport;0.0128154152390094!GO:0006270;DNA replication initiation;0.0129350382934965!GO:0030258;lipid modification;0.0129948989415309!GO:0000726;non-recombinational repair;0.0130113802956377!GO:0005669;transcription factor TFIID complex;0.0130437511790416!GO:0046489;phosphoinositide biosynthetic process;0.0130521164374961!GO:0043601;nuclear replisome;0.0130654780467365!GO:0030894;replisome;0.0130654780467365!GO:0016859;cis-trans isomerase activity;0.0134957902850677!GO:0008022;protein C-terminus binding;0.0134957902850677!GO:0030127;COPII vesicle coat;0.0137672842674984!GO:0012507;ER to Golgi transport vesicle membrane;0.0137672842674984!GO:0046854;phosphoinositide phosphorylation;0.0137722838046428!GO:0009112;nucleobase metabolic process;0.0138002943941921!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0138002943941921!GO:0030880;RNA polymerase complex;0.0138266793179468!GO:0007346;regulation of progression through mitotic cell cycle;0.0138812561906666!GO:0019901;protein kinase binding;0.0140338456671981!GO:0009165;nucleotide biosynthetic process;0.0145573032092341!GO:0009124;nucleoside monophosphate biosynthetic process;0.0147336008187923!GO:0009123;nucleoside monophosphate metabolic process;0.0147336008187923!GO:0000139;Golgi membrane;0.0151471757047138!GO:0006275;regulation of DNA replication;0.0154618643506637!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0155362406511838!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0159466206995146!GO:0042613;MHC class II protein complex;0.0159466206995146!GO:0050681;androgen receptor binding;0.0159466206995146!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0159578685710406!GO:0043549;regulation of kinase activity;0.0161179717087048!GO:0008361;regulation of cell size;0.0161179717087048!GO:0043681;protein import into mitochondrion;0.0162495913090367!GO:0005869;dynactin complex;0.016465766775887!GO:0051087;chaperone binding;0.0166126989047313!GO:0000725;recombinational repair;0.0170431764473648!GO:0000724;double-strand break repair via homologous recombination;0.0170431764473648!GO:0048534;hemopoietic or lymphoid organ development;0.0171639100119439!GO:0000793;condensed chromosome;0.0172814276998904!GO:0045815;positive regulation of gene expression, epigenetic;0.0173696641443095!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0175019986181509!GO:0006278;RNA-dependent DNA replication;0.0177014875537251!GO:0030134;ER to Golgi transport vesicle;0.0178311666807854!GO:0005832;chaperonin-containing T-complex;0.0179206268725865!GO:0051283;negative regulation of sequestering of calcium ion;0.0179206268725865!GO:0051282;regulation of sequestering of calcium ion;0.0179206268725865!GO:0051209;release of sequestered calcium ion into cytosol;0.0179206268725865!GO:0008637;apoptotic mitochondrial changes;0.0180056188520104!GO:0005874;microtubule;0.0180187233271408!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0183675123261109!GO:0051059;NF-kappaB binding;0.0187876887607245!GO:0030132;clathrin coat of coated pit;0.0189788401838081!GO:0003887;DNA-directed DNA polymerase activity;0.0190703149360053!GO:0043407;negative regulation of MAP kinase activity;0.019284495008044!GO:0043492;ATPase activity, coupled to movement of substances;0.0195228458502759!GO:0051656;establishment of organelle localization;0.0197901003834133!GO:0016044;membrane organization and biogenesis;0.0199013161543658!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0205366570809931!GO:0000428;DNA-directed RNA polymerase complex;0.0205366570809931!GO:0005521;lamin binding;0.020559552155544!GO:0019883;antigen processing and presentation of endogenous antigen;0.0205737397958931!GO:0016311;dephosphorylation;0.0206556371099959!GO:0019882;antigen processing and presentation;0.0207345584408535!GO:0051320;S phase;0.0208984524456209!GO:0051336;regulation of hydrolase activity;0.0212617693763931!GO:0042288;MHC class I protein binding;0.0218373068957248!GO:0042054;histone methyltransferase activity;0.0220774544189879!GO:0008624;induction of apoptosis by extracellular signals;0.0221015990250841!GO:0030660;Golgi-associated vesicle membrane;0.02270099569619!GO:0051539;4 iron, 4 sulfur cluster binding;0.0227078839748027!GO:0006144;purine base metabolic process;0.0227355199813364!GO:0016049;cell growth;0.0227460924432982!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0229531303853662!GO:0000152;nuclear ubiquitin ligase complex;0.0229531303853662!GO:0004860;protein kinase inhibitor activity;0.0233767954170096!GO:0035267;NuA4 histone acetyltransferase complex;0.0233767954170096!GO:0018196;peptidyl-asparagine modification;0.0235538180220864!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0235538180220864!GO:0032940;secretion by cell;0.0241213597168092!GO:0001558;regulation of cell growth;0.024378745578018!GO:0045603;positive regulation of endothelial cell differentiation;0.0247231899654167!GO:0042770;DNA damage response, signal transduction;0.0247489062786496!GO:0030119;AP-type membrane coat adaptor complex;0.0249228024981327!GO:0006672;ceramide metabolic process;0.0253034781548533!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0253569726692331!GO:0019210;kinase inhibitor activity;0.0254752282237145!GO:0006378;mRNA polyadenylation;0.0256304854113314!GO:0016279;protein-lysine N-methyltransferase activity;0.0258900711056027!GO:0018024;histone-lysine N-methyltransferase activity;0.0258900711056027!GO:0016278;lysine N-methyltransferase activity;0.0258900711056027!GO:0006406;mRNA export from nucleus;0.0261860308749013!GO:0006595;polyamine metabolic process;0.0262715794772721!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0263946059228037!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0263946059228037!GO:0009893;positive regulation of metabolic process;0.0264132150267474!GO:0015980;energy derivation by oxidation of organic compounds;0.0265989500306274!GO:0051238;sequestering of metal ion;0.0266767653945011!GO:0051540;metal cluster binding;0.0271024126276152!GO:0051536;iron-sulfur cluster binding;0.0271024126276152!GO:0016570;histone modification;0.0271185694288705!GO:0043022;ribosome binding;0.0274146701602076!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0274146701602076!GO:0046834;lipid phosphorylation;0.0274242522024562!GO:0030131;clathrin adaptor complex;0.0276131045044403!GO:0000339;RNA cap binding;0.0278724989984647!GO:0033077;T cell differentiation in the thymus;0.0278724989984647!GO:0003746;translation elongation factor activity;0.0280668419547441!GO:0007017;microtubule-based process;0.0281973418253701!GO:0008213;protein amino acid alkylation;0.0283389141998455!GO:0006479;protein amino acid methylation;0.0283389141998455!GO:0006468;protein amino acid phosphorylation;0.0285906002921371!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0285906002921371!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0285906002921371!GO:0009126;purine nucleoside monophosphate metabolic process;0.0285906002921371!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0285906002921371!GO:0051098;regulation of binding;0.0288355131046848!GO:0042287;MHC protein binding;0.0288821851624272!GO:0032039;integrator complex;0.0288835955824214!GO:0042608;T cell receptor binding;0.0289082039115923!GO:0051789;response to protein stimulus;0.0292780981185875!GO:0006986;response to unfolded protein;0.0292780981185875!GO:0009161;ribonucleoside monophosphate metabolic process;0.0292780981185875!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0292780981185875!GO:0045792;negative regulation of cell size;0.029475366169189!GO:0004402;histone acetyltransferase activity;0.0306333074793196!GO:0004468;lysine N-acetyltransferase activity;0.0306333074793196!GO:0017134;fibroblast growth factor binding;0.0308256610515531!GO:0016853;isomerase activity;0.0310064127387824!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0314689955739931!GO:0045859;regulation of protein kinase activity;0.031516910170138!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0316284647536409!GO:0042809;vitamin D receptor binding;0.0317259066885329!GO:0031365;N-terminal protein amino acid modification;0.0320315085516802!GO:0043130;ubiquitin binding;0.0324520882336715!GO:0032182;small conjugating protein binding;0.0324520882336715!GO:0009967;positive regulation of signal transduction;0.0326269290752637!GO:0046519;sphingoid metabolic process;0.0327097896734296!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0330360115512015!GO:0008629;induction of apoptosis by intracellular signals;0.0330360115512015!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.033432784226287!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.033432784226287!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.033432784226287!GO:0007050;cell cycle arrest;0.0335989752879992!GO:0016605;PML body;0.0339088560916952!GO:0016585;chromatin remodeling complex;0.0342284950012775!GO:0009966;regulation of signal transduction;0.0346531762779312!GO:0044450;microtubule organizing center part;0.0346967499358569!GO:0006266;DNA ligation;0.0347730662014522!GO:0030308;negative regulation of cell growth;0.0350277530100713!GO:0030674;protein binding, bridging;0.0361172720669164!GO:0044452;nucleolar part;0.0362596483096852!GO:0001726;ruffle;0.037058349267961!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.037058349267961!GO:0016581;NuRD complex;0.0370765536254694!GO:0019867;outer membrane;0.0375253643694705!GO:0008180;signalosome;0.0379002133200447!GO:0046426;negative regulation of JAK-STAT cascade;0.0380922933936202!GO:0005741;mitochondrial outer membrane;0.0380922933936202!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0384480393798983!GO:0008097;5S rRNA binding;0.0387130840367565!GO:0000738;DNA catabolic process, exonucleolytic;0.038832065649161!GO:0051223;regulation of protein transport;0.0400443910935922!GO:0046982;protein heterodimerization activity;0.0407763031224354!GO:0000049;tRNA binding;0.0409837931750242!GO:0031968;organelle outer membrane;0.0412684397431355!GO:0006643;membrane lipid metabolic process;0.0423546003129441!GO:0008601;protein phosphatase type 2A regulator activity;0.0428222596085266!GO:0043189;H4/H2A histone acetyltransferase complex;0.0429228576820016!GO:0005788;endoplasmic reticulum lumen;0.0430938977742385!GO:0030041;actin filament polymerization;0.0433118922981891!GO:0031901;early endosome membrane;0.0441716774948886!GO:0000790;nuclear chromatin;0.0442019572445393!GO:0005784;translocon complex;0.044306806754569!GO:0051208;sequestering of calcium ion;0.044306806754569!GO:0015923;mannosidase activity;0.0444398579458373!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0446595157567359!GO:0002378;immunoglobulin biosynthetic process;0.0452249168723951!GO:0001911;negative regulation of leukocyte mediated cytotoxicity;0.0452249168723951!GO:0001915;negative regulation of T cell mediated cytotoxicity;0.0452249168723951!GO:0046979;TAP2 binding;0.0452566061376879!GO:0046977;TAP binding;0.0452566061376879!GO:0046978;TAP1 binding;0.0452566061376879!GO:0031325;positive regulation of cellular metabolic process;0.0453205278348988!GO:0022890;inorganic cation transmembrane transporter activity;0.0457664580355554!GO:0005680;anaphase-promoting complex;0.0458208764350946!GO:0046983;protein dimerization activity;0.0466910739213127!GO:0004532;exoribonuclease activity;0.0472363031129484!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0472363031129484!GO:0000119;mediator complex;0.0473308224362516!GO:0001667;ameboidal cell migration;0.0473308224362516!GO:0032027;myosin light chain binding;0.0473308224362516!GO:0005938;cell cortex;0.0474497145291473!GO:0045767;regulation of anti-apoptosis;0.0474794831195017!GO:0019079;viral genome replication;0.0476227994593853!GO:0001836;release of cytochrome c from mitochondria;0.0485767563773654!GO:0021542;dentate gyrus development;0.0488465702467868!GO:0008408;3'-5' exonuclease activity;0.0490981583759027!GO:0008536;Ran GTPase binding;0.0491375211698531!GO:0002483;antigen processing and presentation of endogenous peptide antigen;0.0493744118458566!GO:0019885;antigen processing and presentation of endogenous peptide antigen via MHC class I;0.0493744118458566!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0495683259552885
|sample_id=10027
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=thymus
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|xref=
}}
}}

Revision as of 18:51, 10 August 2017

Name:thymus, adult, pool1
Species:Human (Homo sapiens)
Library ID:CNhs10633
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuethymus
dev stage0.5,0.5,0.83 years old infant
sexmale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyAmbion
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number0910061 -18
catalog numberCat:AM6000 Lot:0910061 -18
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005063
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10633 CAGE DRX008745 DRR009617
Accession ID Hg19

Library idBAMCTSS
CNhs10633 DRZ001042 DRZ002427
Accession ID Hg38

Library idBAMCTSS
CNhs10633 DRZ012392 DRZ013777
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.0272
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.17
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.521
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.0272
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0.384
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.0272
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0272
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0272
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.142
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.314
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.496
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.379
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.294
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.13
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.0272
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.58
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0272
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.0769
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.00271
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.0769
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus1.141
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.474
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0557
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0272
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0769
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0332
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.322
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0.646
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0178
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.445
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.249
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0272
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0239
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.141
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.0272
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0998
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.0528
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0.0272
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0.0528
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.676
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0.0272
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.0272
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.0528
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10633

Jaspar motifP-value
MA0002.23.54087e-4
MA0003.10.889
MA0004.10.359
MA0006.10.808
MA0007.10.36
MA0009.10.677
MA0014.10.351
MA0017.10.72
MA0018.20.674
MA0019.10.142
MA0024.11.27421e-6
MA0025.10.17
MA0027.10.56
MA0028.11.33366e-4
MA0029.10.866
MA0030.10.267
MA0031.10.0296
MA0035.20.252
MA0038.10.427
MA0039.20.416
MA0040.10.615
MA0041.10.413
MA0042.10.465
MA0043.10.113
MA0046.10.732
MA0047.20.274
MA0048.10.00149
MA0050.12.40014e-6
MA0051.10.0174
MA0052.10.184
MA0055.10.00366
MA0057.10.38
MA0058.10.455
MA0059.10.0658
MA0060.17.85189e-8
MA0061.10.462
MA0062.28.50662e-16
MA0065.20.486
MA0066.10.727
MA0067.10.173
MA0068.10.0341
MA0069.10.668
MA0070.10.314
MA0071.10.198
MA0072.10.838
MA0073.10.21
MA0074.10.052
MA0076.15.32292e-9
MA0077.10.859
MA0078.10.688
MA0079.20.361
MA0080.26.92855e-11
MA0081.10.014
MA0083.10.00432
MA0084.10.71
MA0087.10.804
MA0088.10.351
MA0090.14.44909e-4
MA0091.10.37
MA0092.10.649
MA0093.10.407
MA0099.29.54013e-16
MA0100.11.59558e-4
MA0101.10.693
MA0102.20.276
MA0103.14.43103e-4
MA0104.20.955
MA0105.10.725
MA0106.10.0555
MA0107.10.928
MA0108.20.262
MA0111.10.494
MA0112.20.0181
MA0113.10.673
MA0114.10.187
MA0115.10.869
MA0116.10.382
MA0117.10.644
MA0119.10.0166
MA0122.10.344
MA0124.10.308
MA0125.10.494
MA0131.10.427
MA0135.10.546
MA0136.11.27867e-14
MA0137.20.0269
MA0138.20.708
MA0139.10.268
MA0140.10.845
MA0141.10.00217
MA0142.10.587
MA0143.10.1
MA0144.10.345
MA0145.10.102
MA0146.10.242
MA0147.10.681
MA0148.10.952
MA0149.10.201
MA0150.11.70295e-5
MA0152.10.0595
MA0153.10.381
MA0154.10.548
MA0155.10.518
MA0156.13.23827e-17
MA0157.10.152
MA0159.10.384
MA0160.10.142
MA0162.10.245
MA0163.10.823
MA0164.10.448
MA0258.10.105
MA0259.10.703



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10633

Novel motifP-value
10.417
100.805
1000.174
1010.978
1020.837
1030.612
1040.804
1050.568
1060.087
1070.179
1080.243
1090.376
110.782
1100.249
1110.254
1120.8
1130.585
1140.00672
1150.508
1160.336
1170.225
1180.136
1190.239
120.58
1200.82
1210.11
1220.336
1230.199
1240.228
1250.349
1260.664
1270.36
1280.464
1290.35
130.181
1300.00603
1310.925
1320.842
1330.98
1340.853
1350.047
1360.501
1370.194
1380.533
1390.331
140.687
1400.0406
1410.522
1420.238
1430.201
1440.786
1450.508
1460.138
1470.115
1480.88
1490.303
150.621
1500.699
1510.834
1520.0377
1530.909
1540.353
1550.115
1560.251
1570.0393
1580.621
1590.102
160.392
1600.628
1610.521
1620.387
1630.219
1640.104
1650.898
1660.387
1670.425
1680.093
1690.02
170.284
180.183
190.0127
20.203
200.0318
210.948
220.13
230.182
240.963
250.247
260.859
270.018
280.823
290.599
30.765
300.361
310.392
320.00905
330.497
340.91
350.581
360.471
370.0728
380.78
390.158
40.852
400.172
410.892
420.559
430.592
440.35
450.729
460.571
470.893
480.633
490.524
50.413
500.809
510.97
520.311
530.978
540.498
550.805
560.976
570.0576
580.325
590.59
60.47
600.57
610.208
620.379
630.507
640.746
650.433
660.683
670.24
680.44
690.599
70.74
700.107
710.297
720.0289
730.00672
740.713
750.809
760.12
770.0938
780.862
790.339
80.0638
808.08091e-5
810.706
820.799
830.791
840.334
850.0207
860.505
870.527
880.117
890.274
90.368
900.505
910.925
920.251
930.703
940.902
950.532
960.1
970.537
980.193
990.242



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10633


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002370 (thymus)
0000479 (tissue)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0004177 (hemopoietic organ)
0005057 (immune organ)
0002530 (gland)
0005058 (hemolymphoid system gland)
0010317 (germ layer / neural crest derived structure)
0000153 (anterior region of body)
0002390 (hematopoietic system)
0000949 (endocrine system)
0002193 (hemolymphoid system)
0002405 (immune system)
0009113 (thymic region)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010027 (thymus - adult human sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

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