FF:10041-101F5: Difference between revisions

Revision as of 18:53, 10 August 2017

Name:	dura mater, adult, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs10648
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	dura mater
dev stage	59 years old adult
sex	female
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	3040808
catalog number	Cat:636588
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005192

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10648		CAGE		DRX008647		DRR009519

Accession ID Hg19

Library id		BAM		CTSS
CNhs10648		DRZ000944		DRZ002329

Accession ID Hg38

Library id		BAM		CTSS
CNhs10648		DRZ012294		DRZ013679

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.0266
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.085
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.0266
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0272
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.0266
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.0517
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0517
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0266
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0266
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.367
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.119
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.1
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0574
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.0151
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.29
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.194
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.243
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.0266
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.134
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.378
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0517
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0266
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0883
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.0266
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.101
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.0266
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.573
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.0266
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.14
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.0979
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.0266
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.112
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0979
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.446
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.0266
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.178
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.442
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.0517
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0266
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.207
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0457
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0517
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0511
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.0517
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.0266
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0979
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.0254
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.109
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.128
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.33
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.119
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0754
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.213
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.498
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0517
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.0754
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.54
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.119
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.0498
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.26
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.0517
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.0266
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.0266
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.0266
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.0517
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.229
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.117
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.0266
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.237
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0266
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.0266
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0979
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.0266
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.0266
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.0266
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10648

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.118
MA0003.1	MA0003.1	0.864
MA0004.1	MA0004.1	0.22
MA0006.1	MA0006.1	0.747
MA0007.1	MA0007.1	0.31
MA0009.1	MA0009.1	0.202
MA0014.1	MA0014.1	0.107
MA0017.1	MA0017.1	0.193
MA0018.2	MA0018.2	0.783
MA0019.1	MA0019.1	0.347
MA0024.1	MA0024.1	0.56
MA0025.1	MA0025.1	0.18
MA0027.1	MA0027.1	0.945
MA0028.1	MA0028.1	4.16716e-4
MA0029.1	MA0029.1	0.736
MA0030.1	MA0030.1	0.102
MA0031.1	MA0031.1	0.414
MA0035.2	MA0035.2	0.14
MA0038.1	MA0038.1	0.0807
MA0039.2	MA0039.2	0.353
MA0040.1	MA0040.1	0.695
MA0041.1	MA0041.1	0.717
MA0042.1	MA0042.1	0.489
MA0043.1	MA0043.1	0.598
MA0046.1	MA0046.1	0.863
MA0047.2	MA0047.2	0.465
MA0048.1	MA0048.1	0.195
MA0050.1	MA0050.1	2.40134e-8
MA0051.1	MA0051.1	0.00622
MA0052.1	MA0052.1	7.88043e-4
MA0055.1	MA0055.1	1.96231e-4
MA0057.1	MA0057.1	0.858
MA0058.1	MA0058.1	0.106
MA0059.1	MA0059.1	0.00259
MA0060.1	MA0060.1	0.419
MA0061.1	MA0061.1	0.0517
MA0062.2	MA0062.2	6.57212e-4
MA0065.2	MA0065.2	0.00267
MA0066.1	MA0066.1	0.00671
MA0067.1	MA0067.1	0.396
MA0068.1	MA0068.1	6.0929e-4
MA0069.1	MA0069.1	0.864
MA0070.1	MA0070.1	0.0988
MA0071.1	MA0071.1	0.0472
MA0072.1	MA0072.1	0.11
MA0073.1	MA0073.1	0.666
MA0074.1	MA0074.1	0.168
MA0076.1	MA0076.1	0.00254
MA0077.1	MA0077.1	0.567
MA0078.1	MA0078.1	0.123
MA0079.2	MA0079.2	0.337
MA0080.2	MA0080.2	9.00629e-6
MA0081.1	MA0081.1	0.381
MA0083.1	MA0083.1	0.151
MA0084.1	MA0084.1	0.99
MA0087.1	MA0087.1	0.186
MA0088.1	MA0088.1	0.00588
MA0090.1	MA0090.1	0.664
MA0091.1	MA0091.1	0.601
MA0092.1	MA0092.1	0.801
MA0093.1	MA0093.1	0.2
MA0099.2	MA0099.2	2.78391e-9
MA0100.1	MA0100.1	0.395
MA0101.1	MA0101.1	0.292
MA0102.2	MA0102.2	0.0184
MA0103.1	MA0103.1	0.00691
MA0104.2	MA0104.2	0.0105
MA0105.1	MA0105.1	2.29009e-5
MA0106.1	MA0106.1	0.00424
MA0107.1	MA0107.1	0.505
MA0108.2	MA0108.2	1.34009e-10
MA0111.1	MA0111.1	0.529
MA0112.2	MA0112.2	0.00688
MA0113.1	MA0113.1	0.518
MA0114.1	MA0114.1	0.0257
MA0115.1	MA0115.1	0.0172
MA0116.1	MA0116.1	0.00659
MA0117.1	MA0117.1	0.609
MA0119.1	MA0119.1	0.157
MA0122.1	MA0122.1	0.795
MA0124.1	MA0124.1	0.529
MA0125.1	MA0125.1	0.467
MA0131.1	MA0131.1	0.754
MA0135.1	MA0135.1	0.0667
MA0136.1	MA0136.1	0.0297
MA0137.2	MA0137.2	3.66188e-4
MA0138.2	MA0138.2	0.75
MA0139.1	MA0139.1	0.0214
MA0140.1	MA0140.1	0.364
MA0141.1	MA0141.1	0.00542
MA0142.1	MA0142.1	0.239
MA0143.1	MA0143.1	0.876
MA0144.1	MA0144.1	0.189
MA0145.1	MA0145.1	0.994
MA0146.1	MA0146.1	0.0666
MA0147.1	MA0147.1	0.00452
MA0148.1	MA0148.1	0.959
MA0149.1	MA0149.1	0.0154
MA0150.1	MA0150.1	0.007
MA0152.1	MA0152.1	0.0336
MA0153.1	MA0153.1	0.832
MA0154.1	MA0154.1	0.0456
MA0155.1	MA0155.1	0.853
MA0156.1	MA0156.1	0.849
MA0157.1	MA0157.1	0.719
MA0159.1	MA0159.1	0.0306
MA0160.1	MA0160.1	0.018
MA0162.1	MA0162.1	0.181
MA0163.1	MA0163.1	1.82324e-7
MA0164.1	MA0164.1	0.292
MA0258.1	MA0258.1	0.0176
MA0259.1	MA0259.1	0.11

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10648

Novel motif	Logo	P-value
1	1	0.00557
10	10	0.0361
100	100	0.0746
101	101	0.461
102	102	0.123
103	103	0.0531
104	104	0.844
105	105	0.946
106	106	0.829
107	107	0.31
108	108	0.443
109	109	0.0165
11	11	0.051
110	110	0.0806
111	111	0.0226
112	112	0.465
113	113	0.0313
114	114	0.0756
115	115	0.589
116	116	0.328
117	117	0.00396
118	118	0.0182
119	119	0.271
12	12	0.72
120	120	0.0245
121	121	0.828
122	122	0.674
123	123	0.134
124	124	0.398
125	125	0.0763
126	126	0.381
127	127	0.645
128	128	0.732
129	129	0.0145
13	13	0.0299
130	130	0.393
131	131	0.279
132	132	0.56
133	133	2.27882e-4
134	134	0.0842
135	135	0.0413
136	136	0.0939
137	137	0.461
138	138	0.993
139	139	0.148
14	14	0.927
140	140	0.0843
141	141	0.238
142	142	0.52
143	143	0.0256
144	144	0.77
145	145	0.509
146	146	0.821
147	147	0.811
148	148	0.26
149	149	0.821
15	15	0.0335
150	150	0.369
151	151	0.581
152	152	0.862
153	153	0.963
154	154	0.968
155	155	0.344
156	156	0.539
157	157	0.858
158	158	0.996
159	159	0.402
16	16	0.0288
160	160	0.174
161	161	0.27
162	162	0.965
163	163	0.377
164	164	0.012
165	165	0.442
166	166	0.505
167	167	0.0127
168	168	0.681
169	169	0.0749
17	17	0.592
18	18	0.0831
19	19	0.926
2	2	0.496
20	20	0.0989
21	21	0.314
22	22	0.704
23	23	0.708
24	24	0.353
25	25	0.344
26	26	0.00853
27	27	0.99
28	28	0.59
29	29	0.00509
3	3	0.179
30	30	0.205
31	31	0.729
32	32	0.195
33	33	0.181
34	34	0.322
35	35	0.207
36	36	0.0561
37	37	0.0496
38	38	0.497
39	39	0.868
4	4	0.33
40	40	0.0741
41	41	0.209
42	42	0.353
43	43	0.167
44	44	0.104
45	45	0.614
46	46	0.101
47	47	0.0291
48	48	0.132
49	49	0.0853
5	5	0.393
50	50	0.655
51	51	0.618
52	52	0.324
53	53	0.723
54	54	0.7
55	55	0.837
56	56	0.57
57	57	0.0354
58	58	0.425
59	59	0.539
6	6	0.831
60	60	0.995
61	61	0.349
62	62	0.306
63	63	0.311
64	64	0.117
65	65	0.603
66	66	0.184
67	67	0.254
68	68	0.834
69	69	0.406
7	7	0.308
70	70	0.00665
71	71	0.0157
72	72	0.962
73	73	0.175
74	74	0.783
75	75	0.00693
76	76	0.112
77	77	0.86
78	78	0.0145
79	79	0.0986
8	8	0.138
80	80	0.0653
81	81	0.753
82	82	0.197
83	83	0.851
84	84	0.955
85	85	0.9
86	86	0.403
87	87	0.0123
88	88	0.761
89	89	0.304
9	9	0.446
90	90	0.0455
91	91	0.612
92	92	0.951
93	93	0.194
94	94	0.0643
95	95	0.0339
96	96	0.832
97	97	0.707
98	98	0.217
99	99	0.71

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10648

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010041 human dura mater - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002363 (dura mater)
0002360 (meninx)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000094 (membrane organ)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0010743 (meningeal cluster)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010041 (human dura mater - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0010115 (future dura mater)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005192
+|accession_numbers=CAGE;DRX008647;DRR009519;DRZ000944;DRZ002329;DRZ012294;DRZ013679
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002363,UBERON:0002360,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000094,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0010743
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.04!108.05!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.03!105.84!SPI1;;chr1:170632285..170632309,+!p1@PRRX1!1.96!102.49!PRRX1;;chr16:85932760..85932775,+!p1@IRF8!1.74!54.34!IRF8;;chr21:39870339..39870443,-!p1@ERG!1.71!50.42!ERG;;chr2:45236540..45236577,-!p1@SIX2!1.65!43.60!SIX2;;chr20:39317868..39317884,-!p1@MAFB!1.64!480.91!MAFB;;chr11:113930425..113930471,+!p1@ZBTB16!1.64!60.09!ZBTB16;;chr3:147127142..147127168,+!p1@ZIC1!1.63!41.20!ZIC1;;chr17:53344945..53344977,+!p2@HLF!1.62!40.94!HLF;;chr1:40105299..40105326,-!p1@HEYL!1.58!37.15!HEYL;;chr13:100634031..100634045,+!p1@ZIC2!1.58!37.03!ZIC2;;chr1:170633348..170633399,+!p2@PRRX1!1.57!48.53!PRRX1;;chr11:47399947..47399961,-!p3@SPI1!1.55!34.44!SPI1;;chr11:47400062..47400077,-!p2@SPI1!1.55!34.37!SPI1;;chr17:38256799..38256815,-!p3@NR1D1!1.52!57.50!NR1D1;;chr14:61116183..61116208,-!p1@SIX1!1.51!114.81!SIX1;;chr20:62680984..62680999,-!p1@SOX18!1.51!41.45!SOX18;;chr1:170632477..170632506,+!p6@PRRX1!1.51!31.53!PRRX1;;chr3:147127177..147127194,+!p2@ZIC1!1.51!31.40!ZIC1;;chr17:53342311..53342400,+!p1@HLF!1.50!34.88!HLF;;chr3:71630980..71631110,-!p3@FOXP1!1.48!98.89!FOXP1;;chr17:53344980..53345011,+!p3@HLF!1.48!29.26!HLF;;chr6:1610293..1610310,+!p1@FOXC1!1.45!44.67!FOXC1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.44!26.79!ZBED1;;chr12:26277817..26277863,-!p2@BHLHE41!1.43!34.75!BHLHE41;;chr5:88178983..88179012,-!p1@MEF2C!1.42!187.35!MEF2C;;chr12:54778471..54778528,-!p1@ZNF385A!1.41!24.71!ZNF385A;;chr1:47903709..47903764,+!p1@BC169308!1.38!25.91!FOXD2;;chr16:86600426..86600441,+!p1@FOXC2!1.34!50.36!FOXC2;;chr1:170633262..170633285,+!p3@PRRX1!1.33!23.38!PRRX1;;chr19:46801639..46801699,+!p1@HIF3A!1.32!19.97!HIF3A;;chr11:44331576..44331650,-!p1@ALX4!1.32!19.78!ALX4;;chr5:122424955..122424988,+!p2@PRDM6!1.31!19.65!PRDM6;;chr2:145277640..145277771,-!p1@ZEB2!1.30!248.20!ZEB2;;chr1:170632683..170632696,+!p12@PRRX1!1.29!18.70!PRRX1;;chr9:132427972..132428056,+!p1@PRRX2!1.28!23.51!PRRX2;;chr6:45296048..45296082,+!p1@RUNX2!1.28!20.60!RUNX2;;chr1:170632115..170632136,+!p9@PRRX1!1.28!18.20!PRRX1;;chr7:96654133..96654150,-!p1@DLX5!1.28!18.13!DLX5;;chr5:122424918..122424944,+!p1@PRDM6!1.28!18.07!PRDM6;;chr7:44143925..44143970,+!p1@AEBP1!1.26!370.91!AEBP1;;chr1:170632723..170632739,+!p8@PRRX1!1.26!17.19!PRRX1;;chr4:26165074..26165110,+!p9@RBPJ!1.26!17.19!RBPJ;;chr1:170632137..170632172,+!p10@PRRX1!1.25!16.87!PRRX1;;chr5:158526917..158526932,-!p1@EBF1!1.22!38.16!EBF1;;chr1:170632959..170632987,+!p4@PRRX1!1.22!16.93!PRRX1;;chr17:38256822..38256851,-!p1@NR1D1!1.21!116.71!NR1D1;;chr4:4861385..4861398,+!p1@MSX1!1.21!44.93!MSX1;;chr7:115670804..115670825,-!p1@TFEC!1.20!14.72!TFEC;;chr7:113726357..113726443,+!p1@FOXP2!1.19!25.15!FOXP2;;chr11:47399996..47400014,-!p4@SPI1!1.19!14.66!SPI1;;chr7:63505799..63505904,+!p1@ZNF727!1.19!14.60!ZNF727;;chr1:119530706..119530736,-!p3@TBX15!1.18!14.09!TBX15;;chr1:170632439..170632465,+!p11@PRRX1!1.18!14.03!PRRX1;;chr11:113930291..113930339,+!p2@ZBTB16!1.17!22.24!ZBTB16;;chr6:19837592..19837621,+!p1@ID4!1.16!81.07!ID4;;chrX:106960180..106960197,-!p2@TSC22D3!1.15!50.30!TSC22D3;;chr7:44143978..44143989,+!p2@AEBP1!1.15!24.07!AEBP1;;chr11:47400032..47400043,-!p5@SPI1!1.15!13.08!SPI1;;chr11:125034640..125034655,+!p1@PKNOX2!1.14!12.70!PKNOX2;;chr19:45971246..45971265,+!p1@FOSB!1.12!224.69!FOSB;;chr19:13134772..13134822,+!p2@NFIX!1.11!17.69!NFIX;;chr1:119530493..119530572,-!p1@TBX15!1.11!12.01!TBX15;;chr7:50344289..50344323,+!p1@IKZF1!1.11!11.75!IKZF1;;chr12:26277956..26277980,-!p1@BHLHE41!1.10!42.02!BHLHE41;;chr7:137620684..137620711,-!p4@CREB3L2!1.10!11.50!CREB3L2;;chr5:92918919..92918942,+!p1@NR2F1!1.09!51.05!NR2F1;;chr6:391743..391759,+!p1@IRF4!1.09!11.44!IRF4;;chr11:44331679..44331702,-!p2@ALX4!1.09!11.44!ALX4;;chr11:113930401..113930422,+!p3@ZBTB16!1.07!10.80!ZBTB16;;chr19:16435625..16435682,+!p1@KLF2!1.06!338.62!KLF2;;chr1:61548374..61548415,+!p4@NFIA!1.06!19.84!NFIA;;chr9:132427883..132427951,+!p2@PRRX2!1.06!10.55!PRRX2;;chr11:111249993..111250006,-!p1@POU2AF1!1.06!10.49!POU2AF1;;chr11:47400045..47400060,-!p6@SPI1!1.06!10.43!SPI1;;chr9:73028814..73028895,-!p1@KLF9!1.05!103.12!KLF9;;chrX:106960285..106960299,-!p1@TSC22D3!1.04!273.35!TSC22D3;;chr9:114287433..114287513,+!p1@ZNF483!1.04!26.10!ZNF483;;chr7:44143997..44144008,+!p3@AEBP1!1.04!12.83!AEBP1;;chr7:15726243..15726293,-!p2@MEOX2!1.04!9.98!MEOX2;;chr9:110252035..110252057,-!p1@KLF4!1.03!155.88!KLF4;;chr12:11802753..11802834,+!p2@ETV6!1.03!47.83!ETV6;;chr16:79633894..79633954,-!p3@MAF!1.03!19.02!MAF;;chr8:55370487..55370503,+!p1@SOX17!1.03!9.73!SOX17;;chr18:42260920..42260951,+!p4@SETBP1!1.03!9.67!SETBP1;;chr16:79634624..79634642,-!p1@MAF!1.02!38.04!MAF;;chr18:42260840..42260860,+!p2@SETBP1!1.02!9.41!SETBP1;;chr2:145277882..145277967,-!p3@ZEB2!1.01!16.24!ZEB2;;chr5:158526459..158526481,-!p2@EBF1!1.01!12.26!EBF1;;chr20:50179368..50179392,-!p2@NFATC2!1.01!12.13!NFATC2;;chr6:126240442..126240459,+!p4@NCOA7!1.01!11.75!NCOA7;;chr1:170632250..170632277,+!p7@PRRX1!1.01!9.23!PRRX1;;chr12:26277929..26277955,-!p3@BHLHE41!1.00!12.83!BHLHE41;;chr12:96588368..96588394,+!p3@ELK3!0.99!24.26!ELK3;;chr8:25902876..25902936,-!p1@EBF2!0.99!8.72!EBF2;;chr1:61548225..61548299,+!p1@NFIA!0.98!114.94!NFIA;;chr1:61547894..61547968,+!p2@NFIA!0.97!24.77!NFIA;;chr2:19558373..19558392,-!p1@OSR1!0.97!23.19!OSR1;;chr13:37494365..37494381,-!p1@SMAD9!0.97!14.85!SMAD9;;chr1:158969752..158969780,+!p6@IFI16!0.97!14.60!IFI16;;chr6:126070769..126070801,+!p1@HEY2!0.97!9.54!HEY2;;chr4:26165146..26165163,+!p19@RBPJ!0.97!8.40!RBPJ;;chr8:10588010..10588030,-!p1@SOX7!0.97!8.28!SOX7;;chr22:41763452..41763466,+!p2@TEF!0.96!8.15!TEF;;chr7:100065686..100065701,-!p2@TSC22D4!0.96!8.09!TSC22D4;;chr5:122434947..122434959,+!p4@PRDM6!0.95!7.96!PRDM6;;chr19:22193731..22193751,-!p1@ZNF208!0.95!7.84!ZNF208;;chr3:21792682..21792720,-!p1@ZNF385D!0.95!7.84!ZNF385D;;chr9:16870659..16870675,-!p2@BNC2!0.94!9.48!BNC2;;chr7:50343634..50343717,+!p2@IKZF1!0.94!7.65!IKZF1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.93!78.86!GLIS2;;chr3:114819124..114819200,-!p3@ZBTB20!0.93!18.13!ZBTB20;;chr3:71631151..71631194,-!p15@FOXP1!0.93!8.47!FOXP1;;chr13:100634130..100634143,+!p3@ZIC2!0.93!7.52!ZIC2;;chr20:50159198..50159299,-!p1@NFATC2!0.92!10.80!NFATC2;;chr16:54320101..54320125,-!p4@IRX3!0.92!10.68!IRX3;;chr3:25470156..25470227,+!p2@RARB!0.92!7.27!RARB;;chr12:54772960..54773015,-!p3@ZNF385A!0.91!35.83!ZNF385A;;chr5:88179017..88179046,-!p2@MEF2C!0.91!29.82!MEF2C;;chrX:106960221..106960236,-!p3@TSC22D3!0.91!20.35!TSC22D3;;chr18:53068911..53068935,-!p4@TCF4!0.91!8.21!TCF4;;chr1:25256756..25256774,-!p1@RUNX3!0.90!13.46!RUNX3;;chr6:85474299..85474324,-!p1@TBX18!0.90!12.76!TBX18;;chr5:88179195..88179224,-!p3@MEF2C!0.90!11.44!MEF2C;;chr7:15726296..15726315,-!p1@MEOX2!0.90!7.01!MEOX2;;chr3:147111231..147111281,+!p3@ZIC1!0.90!6.95!ZIC1;;chr3:187463179..187463201,-!p2@BCL6!0.89!29.19!BCL6;;chr15:100106670..100106697,+!p4@MEF2A!0.89!11.44!MEF2A;;chr16:73093174..73093209,-!p3@ZFHX3!0.89!9.35!ZFHX3;;chr7:137620650..137620677,-!p3@CREB3L2!0.89!6.70!CREB3L2;;chr18:42260059..42260132,+!p1@SETBP1!0.88!11.12!SETBP1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.88!6.63!PEG3;;chr1:170633058..170633084,+!p5@PRRX1!0.88!6.63!PRRX1;;chr1:119530636..119530653,-!p2@TBX15!0.88!6.57!TBX15;;chr18:45935720..45935772,-!p1@ZBTB7C!0.88!6.57!ZBTB7C;;chr19:45260775..45260838,+!p5@BCL3!0.87!8.47!BCL3;;chr6:144385698..144385742,-!p2@PLAGL1!0.87!7.96!PLAGL1;;chr18:45663490..45663528,-!p2@ZBTB7C!0.87!6.45!ZBTB7C;;chr9:16727978..16728010,-!p6@BNC2!0.87!6.45!BNC2;;chr3:187463220..187463232,-!p3@BCL6!0.86!19.97!BCL6;;chr10:131762504..131762555,-!p1@EBF3!0.86!6.26!EBF3;;chr2:43454125..43454146,-!p2@ZFP36L2!0.86!6.19!ZFP36L2;;chr2:85981107..85981120,+!p3@ATOH8!0.86!6.19!ATOH8;;chr2:61108695..61108753,+!p1@REL!0.85!44.42!REL;;chr4:87928413..87928433,+!p3@AFF1!0.85!39.87!AFF1;;chr5:72744594..72744609,-!p1@FOXD1!0.85!29.32!FOXD1;;chr7:137686763..137686784,-!p5@CREB3L2!0.85!10.80!CREB3L2;;chr2:166326200..166326216,+!p1@CSRNP3!0.85!9.16!CSRNP3;;chrX:107018969..107019024,-!p6@TSC22D3!0.85!8.53!TSC22D3;;chr17:6926362..6926377,+!p1@BCL6B!0.85!6.07!BCL6B;;chr19:45252008..45252024,+!p2@BCL3!0.84!20.73!BCL3;;chr1:61548069..61548102,+!p3@NFIA!0.84!15.23!NFIA;;chr6:41514178..41514192,+!p4@FOXP4!0.84!7.01!FOXP4;;chr8:81787006..81787031,-!p2@ZNF704!0.84!5.88!ZNF704;;chr2:46524537..46524553,+!p1@EPAS1!0.83!603.43!EPAS1;;chr15:96873921..96873946,+!p1@NR2F2!0.83!172.75!NR2F2;;chr9:110250697..110250738,-!p2@KLF4!0.83!6.82!KLF4;;chr3:128212033..128212051,-!p1@GATA2!0.83!5.75!GATA2;;chr1:119530857..119530884,-!p4@TBX15!0.83!5.75!TBX15;;chr3:114866084..114866118,-!p2@ZBTB20!0.82!21.61!ZBTB20;;chr5:88179230..88179270,-!p4@MEF2C!0.82!11.50!MEF2C;;chr7:96654026..96654061,-!p2@DLX5!0.82!5.56!DLX5;;chr1:164528410..164528428,+!p1@PBX1!0.81!43.91!PBX1;;chr9:117150254..117150271,-!p1@AKNA!0.81!15.73!AKNA;;chr13:37494306..37494324,-!p4@SMAD9!0.81!5.50!SMAD9;;chr1:59249688..59249703,-!p3@JUN!0.80!34.12!JUN;;chr18:22932080..22932170,-!p1@ZNF521!0.80!24.26!ZNF521;;chr3:169381420..169381535,-!p1@MECOM!0.80!6.26!MECOM;;chr22:38380543..38380569,-!p1@SOX10!0.80!5.37!SOX10;;chr9:14314476..14314487,-!p9@NFIB!0.80!5.37!NFIB;;chr9:16727880..16727894,-!p10@BNC2!0.80!5.24!BNC2;;chr13:100634004..100634025,+!p2@ZIC2!0.80!5.24!ZIC2;;chr8:48650715..48650735,-!p1@CEBPD!0.79!724.88!CEBPD;;chr15:66994663..66994680,+!p1@SMAD6!0.79!12.95!SMAD6;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.79!5.18!ZNF676;;chr1:170632310..170632321,+!p15@PRRX1!0.79!5.12!PRRX1;;chr14:75745523..75745537,+!p1@FOS!0.78!664.41!FOS;;chr19:42636586..42636607,-!p1@POU2F2!0.78!14.91!POU2F2;;chr15:100106244..100106259,+!p2@MEF2A!0.78!12.83!MEF2A;;chr7:128577972..128578047,+!p1@IRF5!0.78!8.34!IRF5;;chr16:86600870..86600921,+!p2@FOXC2!0.78!5.05!FOXC2;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!0.78!4.99!SMARCE1;;chr19:13135582..13135600,+!p3@NFIX!0.78!4.99!NFIX;;chr21:40177892..40177903,+!p2@ETS2!0.77!21.42!ETS2;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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010743
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006603,UBERON:0010115,UBERON:0010316
 |fonse_cell_line=
@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/dura%2520mater%252c%2520adult%252c%2520donor1.CNhs10648.10041-101F5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/dura%2520mater%252c%2520adult%252c%2520donor1.CNhs10648.10041-101F5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/dura%2520mater%252c%2520adult%252c%2520donor1.CNhs10648.10041-101F5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/dura%2520mater%252c%2520adult%252c%2520donor1.CNhs10648.10041-101F5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/dura%2520mater%252c%2520adult%252c%2520donor1.CNhs10648.10041-101F5.hg38.nobarcode.ctss.bed.gz
 |id=FF:10041-101F5
 |is_a=EFO:0002091;;FF:0010041
 |is_obsolete=
+|library_id=CNhs10648
+|library_id_phase_based=2:CNhs10648
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10041
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10041
 |name=dura mater, adult, donor1
 |namespace=FANTOM5
@@ Line 46: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10648,LSID658,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 63: / Line 79: @@
 |rna_weight_ug=50
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=

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FF:10041-101F5: Difference between revisions

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