FF:10082-102B1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005055 | ||
|accession_numbers=CAGE;DRX008637;DRR009509;DRZ000934;DRZ002319;DRZ012284;DRZ013669 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001155,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0000059,UBERON:0005409 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010014 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr5:149546334..149546364,+!p1@CDX1!2.45!279.67!CDX1;;chr1:201979743..201979762,+!p1@ELF3!2.32!209.01!ELF3;;chr4:174451370..174451387,-!p1@HAND2!2.13!133.37!HAND2;;chr2:122042770..122042785,-!p1@TFCP2L1!1.99!96.54!TFCP2L1;;chr1:201979703..201979721,+!p2@ELF3!1.88!75.64!ELF3;;chr6:34524093..34524135,-!p1@SPDEF!1.87!73.65!SPDEF;;chr6:134210243..134210257,+!p1@TCF21!1.86!70.66!TCF21;;chr20:42984330..42984364,+!p2@HNF4A!1.84!67.68!HNF4A;;chr16:86544113..86544145,+!p1@FOXF1!1.82!79.62!FOXF1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.75!54.74!ZBED1;;chr17:46682321..46682362,-!p1@HOXB6!1.73!52.75!HOXB6;;chr7:27192185..27192209,-!p1@HOXA3!1.72!51.75!HOXA3;;chr11:34642612..34642646,+!p1@EHF!1.71!49.76!EHF;;chr19:50922187..50922204,+!p1@SPIB!1.71!49.76!SPIB;;chr19:46801639..46801699,+!p1@HIF3A!1.65!43.79!HIF3A;;chr3:12330560..12330579,+!p1@PPARG!1.64!48.77!PPARG;;chr4:174451350..174451363,-!p3@HAND2!1.60!38.82!HAND2;;chr8:76319876..76319926,+!p1@HNF4G!1.57!35.83!HNF4G;;chr6:135502501..135502546,+!p1@MYB!1.53!38.82!MYB;;chr13:28543431..28543487,-!p1@CDX2!1.52!31.85!CDX2;;chr6:1389789..1389821,+!p1@FOXF2!1.51!42.80!FOXF2;;chr19:46367576..46367592,+!p1@FOXA3!1.50!30.85!FOXA3;;chr13:28543285..28543314,-!p2@CDX2!1.50!30.85!CDX2;;chr8:102504651..102504683,+!p1@GRHL2!1.45!26.87!GRHL2;;chr7:27205136..27205164,-!p1@HOXA9!1.43!25.88!HOXA9;;chr16:85932760..85932775,+!p1@IRF8!1.43!25.88!IRF8;;chr2:176973498..176973524,+!p1@HOXD10!1.43!25.88!HOXD10;;chr1:47903709..47903764,+!p1@BC169308!1.42!28.86!FOXD2;;chr14:38064429..38064486,-!p1@FOXA1!1.41!24.88!FOXA1;;chr4:149363494..149363543,-!p1@NR3C2!1.41!24.88!NR3C2;;chr13:73633131..73633149,+!p1@KLF5!1.40!248.82!KLF5;;chr11:34642656..34642667,+!p2@EHF!1.40!23.89!EHF;;chr5:153857778..153857794,-!p1@HAND1!1.40!23.89!HAND1;;chr4:94749897..94749909,+!p1@ATOH1!1.38!22.89!ATOH1;;chr10:101292684..101292706,+!p1@NKX2-3!1.38!22.89!NKX2-3;;chr13:28543253..28543276,-!p5@CDX2!1.38!22.89!CDX2;;chr12:48298765..48298783,-!p2@VDR!1.37!45.78!VDR;;chr13:28543388..28543406,-!p3@CDX2!1.34!20.90!CDX2;;chr13:28543316..28543329,-!p4@CDX2!1.32!19.91!CDX2;;chr2:177001290..177001315,+!p1@HOXD3!1.32!19.91!HOXD3;;chr19:33793430..33793447,-!p1@CEBPA!1.31!79.62!CEBPA;;chr3:119500941..119500961,+!p1@NR1I2!1.30!18.91!NR1I2;;chr7:27224842..27224872,-!p1@HOXA11!1.28!17.91!HOXA11;;chr11:113930425..113930471,+!p1@ZBTB16!1.26!24.88!ZBTB16;;chr18:45663490..45663528,-!p2@ZBTB7C!1.25!16.92!ZBTB7C;;chr20:43029862..43029900,+!p1@HNF4A!1.25!16.92!HNF4A;;chr17:53342311..53342400,+!p1@HLF!1.24!18.91!HLF;;chr18:19749541..19749557,+!p1@GATA6!1.23!49.76!GATA6;;chr20:62680984..62680999,-!p1@SOX18!1.23!20.90!SOX18;;chr1:209979467..209979494,-!p1@IRF6!1.23!17.91!IRF6;;chr7:27224795..27224840,-!p2@HOXA11!1.23!15.92!HOXA11;;chr13:72441315..72441454,-!p1@DACH1!1.22!30.85!DACH1;;chr2:200323414..200323455,-!p1@SATB2!1.20!31.85!SATB2;;chr16:52581025..52581072,-!p1@TOX3!1.20!14.93!TOX3;;chr17:36105042..36105060,-!p1@HNF1B!1.20!14.93!HNF1B;;chr1:6479968..6479986,-!p1@HES2!1.20!14.93!HES2;;chr20:18038521..18038571,-!p1@OVOL2!1.20!14.93!OVOL2;;chr2:60780753..60780800,-!p1@BCL11A!1.17!67.68!BCL11A;;chr6:391743..391759,+!p1@IRF4!1.17!13.93!IRF4;;chr4:149363475..149363492,-!p2@NR3C2!1.14!12.94!NR3C2;;chr3:24536253..24536328,-!p1@THRB!1.12!22.89!THRB;;chr2:177001268..177001287,+!p3@HOXD3!1.11!11.94!HOXD3;;chr2:200322229..200322251,-!p3@SATB2!1.11!11.94!SATB2;;chr11:113930401..113930422,+!p3@ZBTB16!1.11!11.94!ZBTB16;;chr20:50179368..50179392,-!p2@NFATC2!1.10!14.93!NFATC2;;chr17:38256822..38256851,-!p1@NR1D1!1.09!88.58!NR1D1;;chr7:113726357..113726443,+!p1@FOXP2!1.08!18.91!FOXP2;;chr11:111249993..111250006,-!p1@POU2AF1!1.08!10.95!POU2AF1;;chr11:65554528..65554546,+!p1@OVOL1!1.04!9.95!OVOL1;;chr6:34524049..34524089,-!p2@SPDEF!1.04!9.95!SPDEF;;chr7:27205106..27205134,-!p2@HOXA9!1.04!9.95!HOXA9;;chr1:164528445..164528459,+!p2@PBX1!1.02!29.86!PBX1;;chr18:19749517..19749531,+!p3@GATA6!1.02!16.92!GATA6;;chr16:79634595..79634620,-!p2@MAF!1.01!16.92!MAF;;chr3:169381420..169381535,-!p1@MECOM!1.01!10.95!MECOM;;chr22:38380543..38380569,-!p1@SOX10!1.00!8.96!SOX10;;chr2:176994408..176994492,+!p1@HOXD8!1.00!8.96!HOXD8;;chr4:13546632..13546662,-!p1@NKX3-2!1.00!8.96!NKX3-2;;chr4:57522674..57522699,-!p5@HOPX!1.00!8.96!HOPX;;chr18:19749504..19749515,+!p5@GATA6!1.00!8.96!GATA6;;chr1:10856639..10856662,-!p2@CASZ1!1.00!8.96!CASZ1;;chr1:199996831..199996843,+!p4@NR5A2!1.00!8.96!NR5A2;;chr1:2461692..2461710,-!p1@HES5!1.00!8.96!HES5;;chr11:65554563..65554576,+!p2@OVOL1!1.00!8.96!OVOL1;;chr6:1389824..1389840,+!p3@FOXF2!1.00!8.96!FOXF2;;chr7:27213893..27213954,-!p1@HOXA10!1.00!8.96!HOXA10;;chr12:122516646..122516668,+!p1@MLXIP!0.99!120.43!MLXIP;;chr1:164528410..164528428,+!p1@PBX1!0.97!64.69!PBX1;;chr1:61548225..61548299,+!p1@NFIA!0.96!108.48!NFIA;;chr2:19558373..19558392,-!p1@OSR1!0.96!22.89!OSR1;;chr20:50159198..50159299,-!p1@NFATC2!0.96!11.94!NFATC2;;chr1:151804244..151804310,-!p1@RORC!0.95!7.96!RORC;;chr1:209979411..209979433,-!p2@IRF6!0.95!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| |expression_enrichment_score=chr5:149546334..149546364,+!p1@CDX1!2.45!279.67!CDX1;;chr1:201979743..201979762,+!p1@ELF3!2.32!209.01!ELF3;;chr4:174451370..174451387,-!p1@HAND2!2.13!133.37!HAND2;;chr2:122042770..122042785,-!p1@TFCP2L1!1.99!96.54!TFCP2L1;;chr1:201979703..201979721,+!p2@ELF3!1.88!75.64!ELF3;;chr6:34524093..34524135,-!p1@SPDEF!1.87!73.65!SPDEF;;chr6:134210243..134210257,+!p1@TCF21!1.86!70.66!TCF21;;chr20:42984330..42984364,+!p2@HNF4A!1.84!67.68!HNF4A;;chr16:86544113..86544145,+!p1@FOXF1!1.82!79.62!FOXF1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.75!54.74!ZBED1;;chr17:46682321..46682362,-!p1@HOXB6!1.73!52.75!HOXB6;;chr7:27192185..27192209,-!p1@HOXA3!1.72!51.75!HOXA3;;chr11:34642612..34642646,+!p1@EHF!1.71!49.76!EHF;;chr19:50922187..50922204,+!p1@SPIB!1.71!49.76!SPIB;;chr19:46801639..46801699,+!p1@HIF3A!1.65!43.79!HIF3A;;chr3:12330560..12330579,+!p1@PPARG!1.64!48.77!PPARG;;chr4:174451350..174451363,-!p3@HAND2!1.60!38.82!HAND2;;chr8:76319876..76319926,+!p1@HNF4G!1.57!35.83!HNF4G;;chr6:135502501..135502546,+!p1@MYB!1.53!38.82!MYB;;chr13:28543431..28543487,-!p1@CDX2!1.52!31.85!CDX2;;chr6:1389789..1389821,+!p1@FOXF2!1.51!42.80!FOXF2;;chr19:46367576..46367592,+!p1@FOXA3!1.50!30.85!FOXA3;;chr13:28543285..28543314,-!p2@CDX2!1.50!30.85!CDX2;;chr8:102504651..102504683,+!p1@GRHL2!1.45!26.87!GRHL2;;chr7:27205136..27205164,-!p1@HOXA9!1.43!25.88!HOXA9;;chr16:85932760..85932775,+!p1@IRF8!1.43!25.88!IRF8;;chr2:176973498..176973524,+!p1@HOXD10!1.43!25.88!HOXD10;;chr1:47903709..47903764,+!p1@BC169308!1.42!28.86!FOXD2;;chr14:38064429..38064486,-!p1@FOXA1!1.41!24.88!FOXA1;;chr4:149363494..149363543,-!p1@NR3C2!1.41!24.88!NR3C2;;chr13:73633131..73633149,+!p1@KLF5!1.40!248.82!KLF5;;chr11:34642656..34642667,+!p2@EHF!1.40!23.89!EHF;;chr5:153857778..153857794,-!p1@HAND1!1.40!23.89!HAND1;;chr4:94749897..94749909,+!p1@ATOH1!1.38!22.89!ATOH1;;chr10:101292684..101292706,+!p1@NKX2-3!1.38!22.89!NKX2-3;;chr13:28543253..28543276,-!p5@CDX2!1.38!22.89!CDX2;;chr12:48298765..48298783,-!p2@VDR!1.37!45.78!VDR;;chr13:28543388..28543406,-!p3@CDX2!1.34!20.90!CDX2;;chr13:28543316..28543329,-!p4@CDX2!1.32!19.91!CDX2;;chr2:177001290..177001315,+!p1@HOXD3!1.32!19.91!HOXD3;;chr19:33793430..33793447,-!p1@CEBPA!1.31!79.62!CEBPA;;chr3:119500941..119500961,+!p1@NR1I2!1.30!18.91!NR1I2;;chr7:27224842..27224872,-!p1@HOXA11!1.28!17.91!HOXA11;;chr11:113930425..113930471,+!p1@ZBTB16!1.26!24.88!ZBTB16;;chr18:45663490..45663528,-!p2@ZBTB7C!1.25!16.92!ZBTB7C;;chr20:43029862..43029900,+!p1@HNF4A!1.25!16.92!HNF4A;;chr17:53342311..53342400,+!p1@HLF!1.24!18.91!HLF;;chr18:19749541..19749557,+!p1@GATA6!1.23!49.76!GATA6;;chr20:62680984..62680999,-!p1@SOX18!1.23!20.90!SOX18;;chr1:209979467..209979494,-!p1@IRF6!1.23!17.91!IRF6;;chr7:27224795..27224840,-!p2@HOXA11!1.23!15.92!HOXA11;;chr13:72441315..72441454,-!p1@DACH1!1.22!30.85!DACH1;;chr2:200323414..200323455,-!p1@SATB2!1.20!31.85!SATB2;;chr16:52581025..52581072,-!p1@TOX3!1.20!14.93!TOX3;;chr17:36105042..36105060,-!p1@HNF1B!1.20!14.93!HNF1B;;chr1:6479968..6479986,-!p1@HES2!1.20!14.93!HES2;;chr20:18038521..18038571,-!p1@OVOL2!1.20!14.93!OVOL2;;chr2:60780753..60780800,-!p1@BCL11A!1.17!67.68!BCL11A;;chr6:391743..391759,+!p1@IRF4!1.17!13.93!IRF4;;chr4:149363475..149363492,-!p2@NR3C2!1.14!12.94!NR3C2;;chr3:24536253..24536328,-!p1@THRB!1.12!22.89!THRB;;chr2:177001268..177001287,+!p3@HOXD3!1.11!11.94!HOXD3;;chr2:200322229..200322251,-!p3@SATB2!1.11!11.94!SATB2;;chr11:113930401..113930422,+!p3@ZBTB16!1.11!11.94!ZBTB16;;chr20:50179368..50179392,-!p2@NFATC2!1.10!14.93!NFATC2;;chr17:38256822..38256851,-!p1@NR1D1!1.09!88.58!NR1D1;;chr7:113726357..113726443,+!p1@FOXP2!1.08!18.91!FOXP2;;chr11:111249993..111250006,-!p1@POU2AF1!1.08!10.95!POU2AF1;;chr11:65554528..65554546,+!p1@OVOL1!1.04!9.95!OVOL1;;chr6:34524049..34524089,-!p2@SPDEF!1.04!9.95!SPDEF;;chr7:27205106..27205134,-!p2@HOXA9!1.04!9.95!HOXA9;;chr1:164528445..164528459,+!p2@PBX1!1.02!29.86!PBX1;;chr18:19749517..19749531,+!p3@GATA6!1.02!16.92!GATA6;;chr16:79634595..79634620,-!p2@MAF!1.01!16.92!MAF;;chr3:169381420..169381535,-!p1@MECOM!1.01!10.95!MECOM;;chr22:38380543..38380569,-!p1@SOX10!1.00!8.96!SOX10;;chr2:176994408..176994492,+!p1@HOXD8!1.00!8.96!HOXD8;;chr4:13546632..13546662,-!p1@NKX3-2!1.00!8.96!NKX3-2;;chr4:57522674..57522699,-!p5@HOPX!1.00!8.96!HOPX;;chr18:19749504..19749515,+!p5@GATA6!1.00!8.96!GATA6;;chr1:10856639..10856662,-!p2@CASZ1!1.00!8.96!CASZ1;;chr1:199996831..199996843,+!p4@NR5A2!1.00!8.96!NR5A2;;chr1:2461692..2461710,-!p1@HES5!1.00!8.96!HES5;;chr11:65554563..65554576,+!p2@OVOL1!1.00!8.96!OVOL1;;chr6:1389824..1389840,+!p3@FOXF2!1.00!8.96!FOXF2;;chr7:27213893..27213954,-!p1@HOXA10!1.00!8.96!HOXA10;;chr12:122516646..122516668,+!p1@MLXIP!0.99!120.43!MLXIP;;chr1:164528410..164528428,+!p1@PBX1!0.97!64.69!PBX1;;chr1:61548225..61548299,+!p1@NFIA!0.96!108.48!NFIA;;chr2:19558373..19558392,-!p1@OSR1!0.96!22.89!OSR1;;chr20:50159198..50159299,-!p1@NFATC2!0.96!11.94!NFATC2;;chr1:151804244..151804310,-!p1@RORC!0.95!7.96!RORC;;chr1:209979411..209979433,-!p2@IRF6!0.95!7.96!IRF6;;chr20:42984073..42984085,+!p5@HNF4A!0.95!7.96!HNF4A;;chr2:242556880..242556899,-!p5@THAP4!0.95!7.96!THAP4;;chr4:111544219..111544240,-!p1@PITX2!0.95!7.96!PITX2;;chr11:125034640..125034655,+!p1@PKNOX2!0.95!7.96!PKNOX2;;chr11:2292226..2292270,-!p1@ASCL2!0.95!7.96!ASCL2;;chr7:27239703..27239715,-!p1@HOXA13!0.95!7.96!HOXA13;;chr13:73636252..73636307,+!p2@KLF5!0.94!8.96!KLF5;;chr1:8763296..8763339,-!p9@RERE!0.93!18.91!RERE;;chrX:131623044..131623089,-!p1@MBNL3!0.92!31.85!MBNL3;;chr2:145277882..145277967,-!p3@ZEB2!0.92!12.94!ZEB2;;chr5:158526917..158526932,-!p1@EBF1!0.90!17.91!EBF1;;chr7:27179814..27179840,-!p4@HOXA3!0.90!6.97!HOXA3;;chr7:50344289..50344323,+!p1@IKZF1!0.90!6.97!IKZF1;;chr7:73038839..73038862,-!p1@MLXIPL!0.90!6.97!MLXIPL;;chr11:71955210..71955227,-!p1@PHOX2A!0.90!6.97!PHOX2A;;chr13:28541477..28541493,-!p6@CDX2!0.90!6.97!CDX2;;chr15:96869206..96869220,+!p21@NR2F2!0.90!6.97!NR2F2;;chr17:46806035..46806059,-!p2@HOXB13!0.90!6.97!HOXB13;;chr18:45663666..45663709,-!p4@ZBTB7C!0.90!6.97!ZBTB7C;;chr2:200325452..200325462,-!p33@SATB2!0.90!6.97!SATB2;;chr2:200329672..200329678,-!p50@SATB2!0.90!6.97!SATB2;;chr2:242556900..242556916,-!p6@THAP4!0.90!6.97!THAP4;;chr3:63953435..63953499,+!p1@ATXN7!0.90!6.97!ATXN7;;chr1:200011711..200011752,+!p3@NR5A2!0.90!6.97!NR5A2;;chr1:25291475..25291511,-!p2@RUNX3!0.90!6.97!RUNX3;;chr20:43030002..43030028,+!p3@HNF4A!0.90!6.97!HNF4A;;chr16:1464688..1464728,-!p1@UNKL!0.89!48.77!UNKL;;chr16:79634624..79634642,-!p1@MAF!0.89!27.87!MAF;;chr11:61520075..61520136,+!p1@C11orf9!0.89!14.93!C11orf9;;chr18:19749386..19749404,+!p2@GATA6!0.89!9.95!GATA6;;chr11:46299199..46299233,+!p1@CREB3L1!0.88!35.83!CREB3L1;;chr9:127533519..127533573,-!p2@NR6A1!0.88!7.96!NR6A1;;chr1:221052840..221052875,+!p4@HLX!0.88!7.96!HLX;;chr16:73092963..73093001,-!p2@ZFHX3!0.87!14.93!ZFHX3;;chr17:46687959..46688007,-!p2@HOXB7!0.87!8.96!HOXB7;;chr3:12329397..12329433,+!p2@PPARG!0.86!14.93!PPARG;;chr1:214161272..214161322,+!p1@PROX1!0.86!8.96!PROX1;;chr2:66662895..66662907,+!p3@MEIS1!0.86!7.96!MEIS1;;chrX:106960285..106960299,-!p1@TSC22D3!0.85!174.17!TSC22D3;;chr3:71632864..71632885,-!p4@FOXP1!0.85!21.90!FOXP1;;chr17:1959369..1959388,+!p2@HIC1!0.85!16.92!HIC1;;chr3:114819124..114819200,-!p3@ZBTB20!0.85!14.93!ZBTB20;;chr8:60031762..60031803,-!p3@TOX!0.85!8.96!TOX;;chr4:149363544..149363583,-!p3@NR3C2!0.85!6.97!NR3C2;;chr13:73636516..73636532,+!p3@KLF5!0.85!6.97!KLF5;;chr8:60031682..60031710,-!p2@TOX!0.84!9.95!TOX;;chr2:113057415..113057477,+!p3@ZC3H6!0.84!7.96!ZC3H6;;chr2:177001237..177001252,+!p5@HOXD3!0.84!5.97!HOXD3;;chr5:134369879..134369898,-!p2@PITX1!0.84!5.97!PITX1;;chr5:71803177..71803255,-!p1@ZNF366!0.84!5.97!ZNF366;;chr7:63505799..63505904,+!p1@ZNF727!0.84!5.97!ZNF727;;chr11:12696579..12696611,+!p4@TEAD1!0.84!5.97!TEAD1;;chr12:100897130..100897149,+!p3@NR1H4!0.84!5.97!NR1H4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.84!5.97!PEG3;;chr1:10856665..10856683,-!p4@CASZ1!0.84!5.97!CASZ1;;chr1:10856694..10856715,-!p3@CASZ1!0.84!5.97!CASZ1;;chr1:40105299..40105326,-!p1@HEYL!0.84!5.97!HEYL;;chr1:47903765..47903783,+!p3@BC169308!0.84!5.97!FOXD2;;chr17:46806067..46806097,-!p1@HOXB13!0.84!5.97!HOXB13;;chr18:45663584..45663592,-!p9@ZBTB7C!0.84!5.97!ZBTB7C;;chr2:60780607..60780624,-!p2@BCL11A!0.83!18.91!BCL11A;;chr8:71316428..71316459,-!p2@NCOA2!0.83!9.95!NCOA2;;chr11:19263160..19263176,-!p1@E2F8!0.83!6.97!E2F8;;chr18:72922811..72922827,+!p1@TSHZ1!0.82!29.86!TSHZ1;;chr17:46621937..46621966,-!p2@HOXB2!0.82!15.92!HOXB2;;chrX:107018969..107019024,-!p6@TSC22D3!0.82!7.96!TSC22D3;;chr3:141868230..141868250,-!p6@TFDP2!0.82!6.97!TFDP2;;chr10:114709999..114710031,+!p1@TCF7L2!0.81!140.33!TCF7L2;;chr1:61548069..61548102,+!p3@NFIA!0.81!13.93!NFIA;;chr11:47279504..47279563,+!p1@NR1H3!0.81!12.94!NR1H3;;chr12:122516678..122516687,+!p3@MLXIP!0.81!10.95!MLXIP;;chr3:18486354..18486377,-!p2@SATB1!0.81!6.97!SATB1;;chr9:110252035..110252057,-!p1@KLF4!0.80!91.56!KLF4;;chr17:7492684..7492778,-!p2@SOX15!0.80!11.94!SOX15;;chr17:38256799..38256815,-!p3@NR1D1!0.80!9.95!NR1D1;;chr11:113930291..113930339,+!p2@ZBTB16!0.80!8.96!ZBTB16;;chr20:6748325..6748352,+!p1@BMP2!0.80!7.96!BMP2;;chr3:69788576..69788648,+!p1@MITF!0.79!29.86!MITF;;chr3:71632840..71632857,-!p10@FOXP1!0.79!10.95!FOXP1;;chr6:7108179..7108199,+!p4@RREB1!0.79!10.95!RREB1;;chr7:44143978..44143989,+!p2@AEBP1!0.79!9.95!AEBP1;;chr12:48298785..48298828,-!p1@VDR!0.78!28.86!VDR;;chr2:66662249..66662267,+!p2@MEIS1!0.78!20.90!MEIS1;;chr3:114866084..114866118,-!p2@ZBTB20!0.78!19.91!ZBTB20;;chr1:8483756..8483809,-!p5@RERE!0.78!14.93!RERE;;chr1:23857325..23857416,-!p2@E2F2!0.78!5.97!E2F2;;chr22:41763452..41763466,+!p2@TEF!0.78!4.98!TEF;;chr2:100759010..100759035,-!p1@AFF3!0.78!4.98!AFF3;;chr2:200323212..200323223,-!p8@SATB2!0.78!4.98!SATB2;;chr3:128212033..128212051,-!p1@GATA2!0.78!4.98!GATA2;;chr3:141043020..141043049,+!p17@ZBTB38!0.78!4.98!ZBTB38;;chr4:174450089..174450153,-!p2@HAND2!0.78!4.98!HAND2;;chr4:57522598..57522664,-!p3@HOPX!0.78!4.98!HOPX;;chr17:7197911..7197964,-!p1@YBX2!0.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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000160;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001155;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005409 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520donor1.CNhs11794.10082-102B1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520donor1.CNhs11794.10082-102B1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520donor1.CNhs11794.10082-102B1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520donor1.CNhs11794.10082-102B1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520donor1.CNhs11794.10082-102B1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10082-102B1 | |id=FF:10082-102B1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010014 | ||
|is_obsolete= | |||
|library_id=CNhs11794 | |||
|library_id_phase_based=2:CNhs11794 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10082 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10082 | |||
|name=colon, adult, donor1 | |name=colon, adult, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11794,LSID820,release009,COMPLETED | |profile_hcage=CNhs11794,LSID820,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.139681886354933,0,0.0174643166877244,-0.282403560576942,0,0.299999916441319,0,0,0,0,0,0,0,0,0,0,0,0.447190944498839,0,0,0,0,0,0.377789375840968,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.132627328670943,0,0,0,0,0,0,0,0,0.213658614941679,0,0,0,0,0,0.121130690157684,0.299999916441319,0.203007555198714,0,0,0.378403644895929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.237873636054513,0,0,0,0,0.152655420991342,0.398176332785951,0,0,0.0604698974535007,0.188239942704705,-0.0611974444752095,0,0,0,0,0.377711920871319,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252286757480464,0,0,0,0.0371020782862361,0.0083198628007064,0,0,0,0,0,0 | |||
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| |||
|rna_box=102 | |rna_box=102 | ||
|rna_catalog_number=Cat: 636643 Lot: 8101369A-2 | |rna_catalog_number=Cat: 636643 Lot: 8101369A-2 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 100: | ||
|sample_tissue=colon | |sample_tissue=colon | ||
|top_motifs=T:2.51685595312;HNF1A:2.26481593453;HNF4A_NR2F1,2:2.250357577;MTF1:2.0195738912;ZEB1:1.91953296919;SNAI1..3:1.84852274963;SP1:1.84577253136;XCPE1{core}:1.76175167433;SRF:1.74757599385;TFCP2:1.68508175726;SPZ1:1.57359607716;NR5A1,2:1.55579684154;LMO2:1.53483768299;TOPORS:1.49783622468;POU5F1:1.46290891293;TBP:1.45110658071;PITX1..3:1.4184334074;MTE{core}:1.40798323771;NR1H4:1.35284587197;FOX{D1,D2}:1.29205223937;TFAP2B:1.28838312091;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.28784347783;TLX1..3_NFIC{dimer}:1.25687624378;TFAP2{A,C}:1.25092547271;PAX6:1.2327377566;ESRRA:1.19624249182;POU2F1..3:1.18822784467;ZNF148:1.17727923005;RBPJ:1.15616570386;HIC1:1.14592288604;NANOG:1.03494054261;FOXP1:1.03283764443;ZNF423:1.02645294274;RREB1:1.02046664225;GTF2I:1.00396864501;GTF2A1,2:0.980642935186;FOX{I1,J2}:0.956708613779;GATA6:0.844032406738;FOX{F1,F2,J1}:0.832078140953;MED-1{core}:0.81118720533;EP300:0.794429569699;MAZ:0.767271777976;MYOD1:0.713541508277;IKZF1:0.70870087801;EGR1..3:0.706653989347;NKX2-3_NKX2-5:0.701618710623;POU6F1:0.691875593798;AR:0.687767001306;FOXO1,3,4:0.682260560319;NR3C1:0.618108813784;PBX1:0.606167802404;MYBL2:0.591395355008;SMAD1..7,9:0.525095171363;TFAP4:0.524394464639;NR6A1:0.502933542953;DBP:0.502600140392;PRDM1:0.486591213311;MYFfamily:0.465315748625;EBF1:0.459766388419;FOXL1:0.450464609935;OCT4_SOX2{dimer}:0.395714964241;HOX{A6,A7,B6,B7}:0.391559109258;BREu{core}:0.383404459749;FOXA2:0.366764446413;ADNP_IRX_SIX_ZHX:0.337438815622;VSX1,2:0.318581320582;ETS1,2:0.31502716122;HMX1:0.306444642366;ATF6:0.302929735368;MEF2{A,B,C,D}:0.292973189174;TLX2:0.280156136797;RXRA_VDR{dimer}:0.277467416833;GCM1,2:0.265429971202;TBX4,5:0.253318970135;SOX5:0.173991680707;PATZ1:0.154184835092;MZF1:0.149043447202;CDC5L:0.138129279489;ZFP161:0.119894501098;GLI1..3:0.119329121332;ONECUT1,2:0.115447294481;IRF7:0.0960507030757;GFI1:0.0408227868217;IKZF2:0.0331382631874;TEAD1:0.0287127560714;NHLH1,2:0.000754137238522;PAX5:-0.00171581083831;GFI1B:-0.00224961827912;ZNF238:-0.0150958148628;LHX3,4:-0.0266514993935;ZBTB6:-0.048649660535;TFDP1:-0.0756399328263;ESR1:-0.0968640647175;NFY{A,B,C}:-0.100438677925;RXR{A,B,G}:-0.105274809441;NKX6-1,2:-0.109280829392;REST:-0.110991005776;KLF4:-0.111111962196;HOX{A5,B5}:-0.124544022987;FOXN1:-0.127341951284;BPTF:-0.130882905334;NFATC1..3:-0.136006083156;HAND1,2:-0.140339065674;SOX{8,9,10}:-0.144318656472;HES1:-0.146431221918;SPIB:-0.186002614465;SOX2:-0.213100016552;E2F1..5:-0.218600598752;ATF2:-0.23764883188;RUNX1..3:-0.24448480543;IRF1,2:-0.262703176711;ARID5B:-0.274681897371;PRRX1,2:-0.288433363263;SPI1:-0.290357738208;JUN:-0.3237922649;XBP1:-0.329526374615;PPARG:-0.336165736697;PAX3,7:-0.347611693732;STAT2,4,6:-0.35363469104;FOXQ1:-0.354685795371;NFKB1_REL_RELA:-0.361133701605;STAT1,3:-0.397666901847;ZNF143:-0.40351361548;GATA4:-0.40368510322;AIRE:-0.408213374305;SREBF1,2:-0.423697154869;TP53:-0.435978738253;HBP1_HMGB_SSRP1_UBTF:-0.439389655977;TGIF1:-0.462539551489;UFEwm:-0.473487680137;PAX2:-0.486116544092;LEF1_TCF7_TCF7L1,2:-0.496545506888;ALX4:-0.497895665455;HLF:-0.504287501831;NFE2:-0.509261322523;GZF1:-0.51161387818;TEF:-0.525588563637;NFIL3:-0.526180213082;AHR_ARNT_ARNT2:-0.526441877874;NKX2-1,4:-0.584191295157;FOS_FOS{B,L1}_JUN{B,D}:-0.59660090697;ELF1,2,4:-0.61139824769;POU1F1:-0.618069617644;NRF1:-0.631678717767;DMAP1_NCOR{1,2}_SMARC:-0.644408999346;SOX17:-0.652102679638;bHLH_family:-0.673818108452;RFX2..5_RFXANK_RFXAP:-0.674265300339;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.70418851575;NFIX:-0.705412503483;CUX2:-0.72592366887;FOXM1:-0.728528718402;PDX1:-0.748197016782;FOSL2:-0.770833263982;ATF4:-0.773358768057;ZIC1..3:-0.793490190145;HOXA9_MEIS1:-0.807859562552;FOXD3:-0.810863408889;ATF5_CREB3:-0.860433707422;POU3F1..4:-0.874512711435;BACH2:-0.874876853157;HOX{A4,D4}:-0.904717575626;RFX1:-0.918566849565;CEBPA,B_DDIT3:-0.922026044533;CREB1:-0.940169343407;MAFB:-0.946616981924;RORA:-0.96455138344;PAX1,9:-0.974802370791;NFE2L2:-0.97841711436;NFE2L1:-0.993868912785;ZNF384:-1.12146582292;CDX1,2,4:-1.13244802184;TAL1_TCF{3,4,12}:-1.17868240909;HSF1,2:-1.23540155897;MYB:-1.25454029218;NKX2-2,8:-1.25457263667;YY1:-1.3316841021;ALX1:-1.38399529277;ELK1,4_GABP{A,B1}:-1.454689168;ZBTB16:-1.49005599066;NKX3-2:-1.51820004742;NANOG{mouse}:-1.53731651188;CRX:-1.60892913307;EVI1:-1.74281553679;FOXP3:-1.75507573827;EN1,2:-1.82256649097;NKX3-1:-1.84650952912;HMGA1,2:-1.96153980977;STAT5{A,B}:-1.98324088868;HIF1A:-2.18413068115;PAX4:-2.38014170474;PAX8:-2.45496151008 | |top_motifs=T:2.51685595312;HNF1A:2.26481593453;HNF4A_NR2F1,2:2.250357577;MTF1:2.0195738912;ZEB1:1.91953296919;SNAI1..3:1.84852274963;SP1:1.84577253136;XCPE1{core}:1.76175167433;SRF:1.74757599385;TFCP2:1.68508175726;SPZ1:1.57359607716;NR5A1,2:1.55579684154;LMO2:1.53483768299;TOPORS:1.49783622468;POU5F1:1.46290891293;TBP:1.45110658071;PITX1..3:1.4184334074;MTE{core}:1.40798323771;NR1H4:1.35284587197;FOX{D1,D2}:1.29205223937;TFAP2B:1.28838312091;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.28784347783;TLX1..3_NFIC{dimer}:1.25687624378;TFAP2{A,C}:1.25092547271;PAX6:1.2327377566;ESRRA:1.19624249182;POU2F1..3:1.18822784467;ZNF148:1.17727923005;RBPJ:1.15616570386;HIC1:1.14592288604;NANOG:1.03494054261;FOXP1:1.03283764443;ZNF423:1.02645294274;RREB1:1.02046664225;GTF2I:1.00396864501;GTF2A1,2:0.980642935186;FOX{I1,J2}:0.956708613779;GATA6:0.844032406738;FOX{F1,F2,J1}:0.832078140953;MED-1{core}:0.81118720533;EP300:0.794429569699;MAZ:0.767271777976;MYOD1:0.713541508277;IKZF1:0.70870087801;EGR1..3:0.706653989347;NKX2-3_NKX2-5:0.701618710623;POU6F1:0.691875593798;AR:0.687767001306;FOXO1,3,4:0.682260560319;NR3C1:0.618108813784;PBX1:0.606167802404;MYBL2:0.591395355008;SMAD1..7,9:0.525095171363;TFAP4:0.524394464639;NR6A1:0.502933542953;DBP:0.502600140392;PRDM1:0.486591213311;MYFfamily:0.465315748625;EBF1:0.459766388419;FOXL1:0.450464609935;OCT4_SOX2{dimer}:0.395714964241;HOX{A6,A7,B6,B7}:0.391559109258;BREu{core}:0.383404459749;FOXA2:0.366764446413;ADNP_IRX_SIX_ZHX:0.337438815622;VSX1,2:0.318581320582;ETS1,2:0.31502716122;HMX1:0.306444642366;ATF6:0.302929735368;MEF2{A,B,C,D}:0.292973189174;TLX2:0.280156136797;RXRA_VDR{dimer}:0.277467416833;GCM1,2:0.265429971202;TBX4,5:0.253318970135;SOX5:0.173991680707;PATZ1:0.154184835092;MZF1:0.149043447202;CDC5L:0.138129279489;ZFP161:0.119894501098;GLI1..3:0.119329121332;ONECUT1,2:0.115447294481;IRF7:0.0960507030757;GFI1:0.0408227868217;IKZF2:0.0331382631874;TEAD1:0.0287127560714;NHLH1,2:0.000754137238522;PAX5:-0.00171581083831;GFI1B:-0.00224961827912;ZNF238:-0.0150958148628;LHX3,4:-0.0266514993935;ZBTB6:-0.048649660535;TFDP1:-0.0756399328263;ESR1:-0.0968640647175;NFY{A,B,C}:-0.100438677925;RXR{A,B,G}:-0.105274809441;NKX6-1,2:-0.109280829392;REST:-0.110991005776;KLF4:-0.111111962196;HOX{A5,B5}:-0.124544022987;FOXN1:-0.127341951284;BPTF:-0.130882905334;NFATC1..3:-0.136006083156;HAND1,2:-0.140339065674;SOX{8,9,10}:-0.144318656472;HES1:-0.146431221918;SPIB:-0.186002614465;SOX2:-0.213100016552;E2F1..5:-0.218600598752;ATF2:-0.23764883188;RUNX1..3:-0.24448480543;IRF1,2:-0.262703176711;ARID5B:-0.274681897371;PRRX1,2:-0.288433363263;SPI1:-0.290357738208;JUN:-0.3237922649;XBP1:-0.329526374615;PPARG:-0.336165736697;PAX3,7:-0.347611693732;STAT2,4,6:-0.35363469104;FOXQ1:-0.354685795371;NFKB1_REL_RELA:-0.361133701605;STAT1,3:-0.397666901847;ZNF143:-0.40351361548;GATA4:-0.40368510322;AIRE:-0.408213374305;SREBF1,2:-0.423697154869;TP53:-0.435978738253;HBP1_HMGB_SSRP1_UBTF:-0.439389655977;TGIF1:-0.462539551489;UFEwm:-0.473487680137;PAX2:-0.486116544092;LEF1_TCF7_TCF7L1,2:-0.496545506888;ALX4:-0.497895665455;HLF:-0.504287501831;NFE2:-0.509261322523;GZF1:-0.51161387818;TEF:-0.525588563637;NFIL3:-0.526180213082;AHR_ARNT_ARNT2:-0.526441877874;NKX2-1,4:-0.584191295157;FOS_FOS{B,L1}_JUN{B,D}:-0.59660090697;ELF1,2,4:-0.61139824769;POU1F1:-0.618069617644;NRF1:-0.631678717767;DMAP1_NCOR{1,2}_SMARC:-0.644408999346;SOX17:-0.652102679638;bHLH_family:-0.673818108452;RFX2..5_RFXANK_RFXAP:-0.674265300339;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.70418851575;NFIX:-0.705412503483;CUX2:-0.72592366887;FOXM1:-0.728528718402;PDX1:-0.748197016782;FOSL2:-0.770833263982;ATF4:-0.773358768057;ZIC1..3:-0.793490190145;HOXA9_MEIS1:-0.807859562552;FOXD3:-0.810863408889;ATF5_CREB3:-0.860433707422;POU3F1..4:-0.874512711435;BACH2:-0.874876853157;HOX{A4,D4}:-0.904717575626;RFX1:-0.918566849565;CEBPA,B_DDIT3:-0.922026044533;CREB1:-0.940169343407;MAFB:-0.946616981924;RORA:-0.96455138344;PAX1,9:-0.974802370791;NFE2L2:-0.97841711436;NFE2L1:-0.993868912785;ZNF384:-1.12146582292;CDX1,2,4:-1.13244802184;TAL1_TCF{3,4,12}:-1.17868240909;HSF1,2:-1.23540155897;MYB:-1.25454029218;NKX2-2,8:-1.25457263667;YY1:-1.3316841021;ALX1:-1.38399529277;ELK1,4_GABP{A,B1}:-1.454689168;ZBTB16:-1.49005599066;NKX3-2:-1.51820004742;NANOG{mouse}:-1.53731651188;CRX:-1.60892913307;EVI1:-1.74281553679;FOXP3:-1.75507573827;EN1,2:-1.82256649097;NKX3-1:-1.84650952912;HMGA1,2:-1.96153980977;STAT5{A,B}:-1.98324088868;HIF1A:-2.18413068115;PAX4:-2.38014170474;PAX8:-2.45496151008 | ||
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Revision as of 18:59, 10 August 2017
| Name: | colon, adult, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11794 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11794
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11794
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.28 |
| 10 | 10 | 0.0601 |
| 100 | 100 | 0.296 |
| 101 | 101 | 0.698 |
| 102 | 102 | 0.43 |
| 103 | 103 | 0.0183 |
| 104 | 104 | 0.931 |
| 105 | 105 | 0.0818 |
| 106 | 106 | 0.621 |
| 107 | 107 | 0.0347 |
| 108 | 108 | 0.332 |
| 109 | 109 | 0.618 |
| 11 | 11 | 0.539 |
| 110 | 110 | 0.406 |
| 111 | 111 | 0.157 |
| 112 | 112 | 0.625 |
| 113 | 113 | 0.439 |
| 114 | 114 | 0.108 |
| 115 | 115 | 0.879 |
| 116 | 116 | 0.729 |
| 117 | 117 | 0.0199 |
| 118 | 118 | 0.298 |
| 119 | 119 | 0.553 |
| 12 | 12 | 0.484 |
| 120 | 120 | 0.148 |
| 121 | 121 | 0.845 |
| 122 | 122 | 0.962 |
| 123 | 123 | 0.0395 |
| 124 | 124 | 0.737 |
| 125 | 125 | 0.257 |
| 126 | 126 | 0.95 |
| 127 | 127 | 0.111 |
| 128 | 128 | 0.0195 |
| 129 | 129 | 0.629 |
| 13 | 13 | 0.32 |
| 130 | 130 | 0.844 |
| 131 | 131 | 0.352 |
| 132 | 132 | 0.00479 |
| 133 | 133 | 0.0363 |
| 134 | 134 | 0.0124 |
| 135 | 135 | 0.121 |
| 136 | 136 | 0.767 |
| 137 | 137 | 0.104 |
| 138 | 138 | 0.68 |
| 139 | 139 | 0.37 |
| 14 | 14 | 0.499 |
| 140 | 140 | 0.85 |
| 141 | 141 | 0.282 |
| 142 | 142 | 0.951 |
| 143 | 143 | 0.0137 |
| 144 | 144 | 0.763 |
| 145 | 145 | 0.14 |
| 146 | 146 | 0.269 |
| 147 | 147 | 0.475 |
| 148 | 148 | 0.91 |
| 149 | 149 | 0.171 |
| 15 | 15 | 0.184 |
| 150 | 150 | 0.605 |
| 151 | 151 | 0.468 |
| 152 | 152 | 0.186 |
| 153 | 153 | 0.867 |
| 154 | 154 | 0.937 |
| 155 | 155 | 0.73 |
| 156 | 156 | 0.556 |
| 157 | 157 | 0.945 |
| 158 | 158 | 0.379 |
| 159 | 159 | 0.517 |
| 16 | 16 | 0.429 |
| 160 | 160 | 0.903 |
| 161 | 161 | 0.506 |
| 162 | 162 | 0.0914 |
| 163 | 163 | 0.927 |
| 164 | 164 | 0.0701 |
| 165 | 165 | 0.621 |
| 166 | 166 | 0.476 |
| 167 | 167 | 0.217 |
| 168 | 168 | 0.169 |
| 169 | 169 | 0.375 |
| 17 | 17 | 0.604 |
| 18 | 18 | 0.00666 |
| 19 | 19 | 0.375 |
| 2 | 2 | 0.0355 |
| 20 | 20 | 0.125 |
| 21 | 21 | 0.313 |
| 22 | 22 | 0.583 |
| 23 | 23 | 0.385 |
| 24 | 24 | 0.375 |
| 25 | 25 | 0.547 |
| 26 | 26 | 0.564 |
| 27 | 27 | 0.438 |
| 28 | 28 | 0.676 |
| 29 | 29 | 0.0511 |
| 3 | 3 | 0.7 |
| 30 | 30 | 0.048 |
| 31 | 31 | 0.711 |
| 32 | 32 | 0.749 |
| 33 | 33 | 0.0885 |
| 34 | 34 | 0.218 |
| 35 | 35 | 0.112 |
| 36 | 36 | 0.0362 |
| 37 | 37 | 0.262 |
| 38 | 38 | 0.416 |
| 39 | 39 | 0.337 |
| 4 | 4 | 0.967 |
| 40 | 40 | 0.627 |
| 41 | 41 | 0.104 |
| 42 | 42 | 0.357 |
| 43 | 43 | 0.76 |
| 44 | 44 | 0.756 |
| 45 | 45 | 0.17 |
| 46 | 46 | 0.461 |
| 47 | 47 | 0.432 |
| 48 | 48 | 0.527 |
| 49 | 49 | 0.777 |
| 5 | 5 | 0.735 |
| 50 | 50 | 0.434 |
| 51 | 51 | 0.805 |
| 52 | 52 | 0.101 |
| 53 | 53 | 0.164 |
| 54 | 54 | 0.711 |
| 55 | 55 | 0.361 |
| 56 | 56 | 0.639 |
| 57 | 57 | 0.263 |
| 58 | 58 | 0.81 |
| 59 | 59 | 0.841 |
| 6 | 6 | 0.654 |
| 60 | 60 | 0.358 |
| 61 | 61 | 0.819 |
| 62 | 62 | 0.848 |
| 63 | 63 | 0.833 |
| 64 | 64 | 0.971 |
| 65 | 65 | 0.286 |
| 66 | 66 | 0.138 |
| 67 | 67 | 0.0757 |
| 68 | 68 | 0.861 |
| 69 | 69 | 0.505 |
| 7 | 7 | 0.978 |
| 70 | 70 | 0.337 |
| 71 | 71 | 0.0781 |
| 72 | 72 | 0.389 |
| 73 | 73 | 0.923 |
| 74 | 74 | 0.426 |
| 75 | 75 | 0.00661 |
| 76 | 76 | 0.0166 |
| 77 | 77 | 0.0327 |
| 78 | 78 | 0.836 |
| 79 | 79 | 0.471 |
| 8 | 8 | 0.973 |
| 80 | 80 | 0.963 |
| 81 | 81 | 0.895 |
| 82 | 82 | 0.494 |
| 83 | 83 | 0.667 |
| 84 | 84 | 0.26 |
| 85 | 85 | 0.403 |
| 86 | 86 | 0.496 |
| 87 | 87 | 0.469 |
| 88 | 88 | 0.872 |
| 89 | 89 | 0.944 |
| 9 | 9 | 0.446 |
| 90 | 90 | 0.00414 |
| 91 | 91 | 0.0798 |
| 92 | 92 | 0.511 |
| 93 | 93 | 0.123 |
| 94 | 94 | 0.0431 |
| 95 | 95 | 0.15 |
| 96 | 96 | 0.444 |
| 97 | 97 | 0.936 |
| 98 | 98 | 0.972 |
| 99 | 99 | 0.0475 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11794
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010014 human colon - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001155 (colon)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000059 (large intestine)
0005409 (gastrointestinal system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010014 (human colon - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
