FF:10101-102D2
From FANTOM5_SSTAR
| Name: | whole body, embryo E17.5, pool1 (internal control) |
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| Species: | Mouse (Mus musculus) |
| Library ID: | CNhs13047,CNhs13071,CNhs13198,CNhs13222,CNhs13438,CNhs13462,CNhs13486,CNhs13510,CNhs13534,CNhs13558,CNhs12613,CNhs12637,CNhs12661,CNhs12685,CNhs12729,CNhs12841,CNhs12865,CNhs12959,CNhs12999,CNhs13023,CNhs12457,CNhs12481,CNhs12793,CNhs12817,CNhs12745,CNhs12769,CNhs13246,CNhs13270,CNhs12889,CNhs12913,CNhs13095,CNhs13119,CNhs13143,CNhs13167,CNhs13294,CNhs13318,CNhs13342,CNhs13366,CNhs13390,CNhs13414,CNhs13618,CNhs13642,CNhs12983,CNhs13713,CNhs13737,CNhs13761,CNhs13785,CNhs13810,CNhs13834,CNhs13570,CNhs13594,CNhs12409,CNhs12433,CNhs13685,CNhs13923,CNhs14372,CNhs14373,CNhs13230,CNhs12521,CNhs12537,CNhs12561 |
| Sample type: | control |
| Genomic View: | UCSC |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
no result for this sample
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0001461 control
FF:0011374 mouse whole body- embryo E17.5 sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000301 (mouse embryonic day 17.5 sample)
0011374 (mouse whole body- embryo E17.5 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
FF:0000294 (mouse embryonic day 11 sample)
