FF:10154-103A1: Difference between revisions

Latest revision as of 12:22, 3 June 2020

Name:	thalamus, adult, donor10252
Species:	Human (Homo sapiens)
Library ID:	CNhs12314
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	thalamus
dev stage	NA
sex	female
age	76
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005223

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12314		CAGE		DRX008742		DRR009614

Accession ID Hg19

Library id		BAM		CTSS
CNhs12314		DRZ001039		DRZ002424

Accession ID Hg38

Library id		BAM		CTSS
CNhs12314		DRZ012389		DRZ013774

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

HumanCAGEScan Download raw sequence, BAM & CTSS

Library id		3prime-FASTQ		5prime-FASTQ		BAM		CTSS
NCig10026		download		download		download		download

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.181
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.957
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.306
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.0427
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.286
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.21
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0817
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0427
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.175
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0427
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0817
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.0427
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.117
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.389
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0289
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.266
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.789
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.15
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0817
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0678
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.0427
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0217
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0427
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.86
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0427
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.229
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.117
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0427
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0817
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.0427
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.237
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0427
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.15
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0526
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0404
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.487
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.107
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.0427
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.262
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.526
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.383
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	1.1
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0817
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.181
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.35
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0817
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.33
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.237
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.286
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.752
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.117
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.424
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0817
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12314

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0437
MA0003.1	MA0003.1	0.192
MA0004.1	MA0004.1	0.323
MA0006.1	MA0006.1	0.306
MA0007.1	MA0007.1	0.518
MA0009.1	MA0009.1	0.115
MA0014.1	MA0014.1	0.704
MA0017.1	MA0017.1	0.00114
MA0018.2	MA0018.2	0.58
MA0019.1	MA0019.1	0.921
MA0024.1	MA0024.1	0.611
MA0025.1	MA0025.1	0.962
MA0027.1	MA0027.1	0.533
MA0028.1	MA0028.1	0.0587
MA0029.1	MA0029.1	0.0297
MA0030.1	MA0030.1	0.108
MA0031.1	MA0031.1	0.147
MA0035.2	MA0035.2	0.00781
MA0038.1	MA0038.1	0.272
MA0039.2	MA0039.2	0.166
MA0040.1	MA0040.1	0.844
MA0041.1	MA0041.1	0.431
MA0042.1	MA0042.1	0.923
MA0043.1	MA0043.1	0.856
MA0046.1	MA0046.1	0.00141
MA0047.2	MA0047.2	0.468
MA0048.1	MA0048.1	0.134
MA0050.1	MA0050.1	0.145
MA0051.1	MA0051.1	0.232
MA0052.1	MA0052.1	0.542
MA0055.1	MA0055.1	6.49112e-4
MA0057.1	MA0057.1	0.804
MA0058.1	MA0058.1	0.387
MA0059.1	MA0059.1	0.0704
MA0060.1	MA0060.1	0.356
MA0061.1	MA0061.1	0.00352
MA0062.2	MA0062.2	0.0029
MA0065.2	MA0065.2	6.72148e-4
MA0066.1	MA0066.1	0.00677
MA0067.1	MA0067.1	0.886
MA0068.1	MA0068.1	0.748
MA0069.1	MA0069.1	0.77
MA0070.1	MA0070.1	0.593
MA0071.1	MA0071.1	0.0136
MA0072.1	MA0072.1	0.349
MA0073.1	MA0073.1	0.522
MA0074.1	MA0074.1	0.243
MA0076.1	MA0076.1	0.116
MA0077.1	MA0077.1	0.00762
MA0078.1	MA0078.1	0.805
MA0079.2	MA0079.2	0.894
MA0080.2	MA0080.2	1.05347e-6
MA0081.1	MA0081.1	0.0249
MA0083.1	MA0083.1	0.00698
MA0084.1	MA0084.1	0.176
MA0087.1	MA0087.1	0.287
MA0088.1	MA0088.1	0.355
MA0090.1	MA0090.1	0.193
MA0091.1	MA0091.1	0.548
MA0092.1	MA0092.1	0.214
MA0093.1	MA0093.1	0.375
MA0099.2	MA0099.2	1.36423e-24
MA0100.1	MA0100.1	0.528
MA0101.1	MA0101.1	0.00229
MA0102.2	MA0102.2	0.103
MA0103.1	MA0103.1	0.052
MA0104.2	MA0104.2	0.406
MA0105.1	MA0105.1	3.1952e-4
MA0106.1	MA0106.1	0.0216
MA0107.1	MA0107.1	0.00169
MA0108.2	MA0108.2	0.0579
MA0111.1	MA0111.1	0.782
MA0112.2	MA0112.2	0.00106
MA0113.1	MA0113.1	0.964
MA0114.1	MA0114.1	0.00278
MA0115.1	MA0115.1	0.746
MA0116.1	MA0116.1	0.00375
MA0117.1	MA0117.1	0.761
MA0119.1	MA0119.1	0.254
MA0122.1	MA0122.1	0.78
MA0124.1	MA0124.1	0.93
MA0125.1	MA0125.1	0.444
MA0131.1	MA0131.1	0.937
MA0135.1	MA0135.1	0.325
MA0136.1	MA0136.1	1.48527e-10
MA0137.2	MA0137.2	0.246
MA0138.2	MA0138.2	0.549
MA0139.1	MA0139.1	0.494
MA0140.1	MA0140.1	0.00787
MA0141.1	MA0141.1	0.0019
MA0142.1	MA0142.1	0.429
MA0143.1	MA0143.1	0.0387
MA0144.1	MA0144.1	0.692
MA0145.1	MA0145.1	0.276
MA0146.1	MA0146.1	0.0319
MA0147.1	MA0147.1	0.225
MA0148.1	MA0148.1	0.422
MA0149.1	MA0149.1	0.0137
MA0150.1	MA0150.1	4.35556e-5
MA0152.1	MA0152.1	0.571
MA0153.1	MA0153.1	0.236
MA0154.1	MA0154.1	0.0495
MA0155.1	MA0155.1	0.57
MA0156.1	MA0156.1	3.82932e-7
MA0157.1	MA0157.1	0.68
MA0159.1	MA0159.1	0.0115
MA0160.1	MA0160.1	0.012
MA0162.1	MA0162.1	0.131
MA0163.1	MA0163.1	9.4947e-7
MA0164.1	MA0164.1	0.679
MA0258.1	MA0258.1	0.018
MA0259.1	MA0259.1	0.724

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12314

Novel motif	Logo	P-value
1	1	0.074
10	10	0.0567
100	100	0.371
101	101	0.401
102	102	0.925
103	103	0.0505
104	104	0.104
105	105	0.158
106	106	0.0249
107	107	0.129
108	108	0.918
109	109	9.81437e-4
11	11	0.00877
110	110	0.0519
111	111	0.219
112	112	0.332
113	113	0.332
114	114	0.191
115	115	0.823
116	116	0.144
117	117	0.0157
118	118	0.27
119	119	0.297
12	12	0.49
120	120	0.206
121	121	0.392
122	122	0.828
123	123	0.274
124	124	0.266
125	125	0.542
126	126	0.046
127	127	0.4
128	128	0.169
129	129	0.51
13	13	0.00362
130	130	0.34
131	131	0.0417
132	132	0.425
133	133	0.115
134	134	0.472
135	135	0.184
136	136	8.82695e-4
137	137	0.887
138	138	0.915
139	139	0.281
14	14	0.923
140	140	0.982
141	141	0.415
142	142	0.353
143	143	0.0409
144	144	0.697
145	145	0.29
146	146	0.624
147	147	0.804
148	148	0.475
149	149	0.28
15	15	0.0687
150	150	0.108
151	151	0.822
152	152	0.0656
153	153	0.89
154	154	0.278
155	155	0.958
156	156	0.412
157	157	0.409
158	158	0.0857
159	159	0.00477
16	16	0.0268
160	160	0.237
161	161	0.364
162	162	0.654
163	163	0.916
164	164	0.0136
165	165	0.168
166	166	0.812
167	167	0.903
168	168	0.741
169	169	0.0227
17	17	0.0905
18	18	0.0546
19	19	0.264
2	2	0.903
20	20	0.144
21	21	0.0383
22	22	0.227
23	23	0.389
24	24	0.0453
25	25	0.544
26	26	0.00313
27	27	0.517
28	28	0.855
29	29	0.00332
3	3	0.0684
30	30	0.925
31	31	0.91
32	32	0.00961
33	33	0.0461
34	34	0.675
35	35	0.614
36	36	0.241
37	37	0.0312
38	38	0.441
39	39	0.3
4	4	0.793
40	40	0.0541
41	41	0.312
42	42	0.265
43	43	0.141
44	44	0.123
45	45	0.68
46	46	0.0513
47	47	0.0791
48	48	0.063
49	49	0.384
5	5	0.928
50	50	0.481
51	51	0.387
52	52	0.592
53	53	0.474
54	54	0.536
55	55	0.727
56	56	0.596
57	57	0.405
58	58	0.362
59	59	0.0554
6	6	0.797
60	60	0.0864
61	61	0.137
62	62	0.207
63	63	0.338
64	64	0.138
65	65	0.266
66	66	0.112
67	67	0.329
68	68	0.446
69	69	0.262
7	7	0.121
70	70	0.0628
71	71	0.00918
72	72	0.272
73	73	0.0249
74	74	0.869
75	75	0.0263
76	76	0.332
77	77	0.118
78	78	0.00189
79	79	0.361
8	8	0.0604
80	80	0.437
81	81	0.509
82	82	0.636
83	83	0.0468
84	84	0.572
85	85	0.366
86	86	0.211
87	87	1.07957e-4
88	88	0.628
89	89	0.165
9	9	0.366
90	90	0.0702
91	91	0.737
92	92	0.448
93	93	0.904
94	94	0.209
95	95	0.0116
96	96	0.774
97	97	0.744
98	98	0.222
99	99	0.588

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12314

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010154 human thalamus - adult donor sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001897 (dorsal plus ventral thalamus)
0001894 (diencephalon)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002784 (regional part of diencephalon)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001890 (forebrain)
0010225 (thalamic complex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010154 (human thalamus - adult donor sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000922,UBERON:0000955,UBERON:0001897,UBERON:0001894,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0002346,UBERON:0000073,UBERON:0004121,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0002616,UBERON:0001062,UBERON:0000119,UBERON:0005291,UBERON:0002780,UBERON:0006598,UBERON:0002532,UBERON:0001017,UBERON:0001016,UBERON:0000153,UBERON:0007811,UBERON:0000924,UBERON:0001890,UBERON:0005743,UBERON:0003075,UBERON:0003056,UBERON:0001049,UBERON:0006238,UBERON:0006601,UBERON:0005068,UBERON:0006241,UBERON:0003080,UBERON:0006240,UBERON:0006222,UBERON:0007284,UBERON:0007135
+|DRA_sample_Accession=CAGE@SAMD00005223
+|HumanCAGEScanFiles=NCig10026;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/thalamus%252c%2520adult%252c%2520donor10252.NCig10026.10154-103A1.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/thalamus%252c%2520adult%252c%2520donor10252.NCig10026.10154-103A1.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/thalamus%252c%2520adult%252c%2520donor10252.NCig10026.10154-103A1.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/thalamus%252c%2520adult%252c%2520donor10252.NCig10026.10154-103A1.hg19.GCTATA.pairs.bed.gz
+|accession_numbers=CAGE;DRX008742;DRR009614;DRZ001039;DRZ002424;DRZ012389;DRZ013774
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001897,UBERON:0001894,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002784,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001890,UBERON:0010225
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010154
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.75!556.68!TSC22D4;;chr22:38380543..38380569,-!p1@SOX10!2.55!355.81!SOX10;;chr21:34442439..34442455,+!p1@OLIG1!2.53!339.26!OLIG1;;chr11:61520075..61520136,+!p1@C11orf9!2.32!420.46!C11orf9;;chr8:53322304..53322340,-!p1@ST18!2.19!154.84!ST18;;chr2:145277882..145277967,-!p3@ZEB2!1.99!161.56!ZEB2;;chr3:181429704..181429722,+!p1@SOX2!1.99!97.64!SOX2;;chr10:134599649..134599653,-!p1@NKX6-2!1.97!93.19!NKX6-2;;chr16:1031762..1031781,+!p1@SOX8!1.96!90.30!SOX8;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.96!89.37!PEG3;;chr21:34398234..34398250,+!p1@OLIG2!1.93!83.99!OLIG2;;chr8:53322347..53322378,-!p2@ST18!1.90!77.78!ST18;;chr12:26277817..26277863,-!p2@BHLHE41!1.89!101.47!BHLHE41;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.82!65.47!POU3F3;;chr12:26277956..26277980,-!p1@BHLHE41!1.79!210.38!BHLHE41;;chr21:34442540..34442560,+!p2@OLIG1!1.74!53.37!OLIG1;;chr10:48355030..48355090,+!p1@ZNF488!1.68!59.99!ZNF488;;chr12:106976678..106976708,+!p2@RFX4!1.64!42.92!RFX4;;chr19:46801639..46801699,+!p1@HIF3A!1.63!41.79!HIF3A;;chr11:113930425..113930471,+!p1@ZBTB16!1.61!56.78!ZBTB16;;chr9:114287433..114287513,+!p1@ZNF483!1.58!92.99!ZNF483;;chr3:126076242..126076257,-!p1@KLF15!1.58!45.92!KLF15;;chr16:85932760..85932775,+!p1@IRF8!1.54!34.03!IRF8;;chr1:214161272..214161322,+!p1@PROX1!1.53!46.13!PROX1;;chr12:54779511..54779577,-!p5@ZNF385A!1.53!33.10!ZNF385A;;chr11:47400078..47400106,-!p1@SPI1!1.51!31.34!SPI1;;chr2:95963052..95963106,+!p1@KCNIP3!1.47!28.34!KCNIP3;;chr15:80696703..80696754,+!p1@ARNT2!1.46!36.72!ARNT2;;chr4:81118647..81118666,+!p1@PRDM8!1.45!35.79!PRDM8;;chr19:13135386..13135435,+!p4@NFIX!1.45!27.10!NFIX;;chr9:77112244..77112262,+!p1@RORB!1.44!29.37!RORB;;chr3:181429741..181429767,+!p2@SOX2!1.42!25.13!SOX2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.40!24.00!POU3F3;;chr15:80735246..80735321,+!p3@ARNT2!1.39!23.58!ARNT2;;chr11:31832862..31832884,-!p2@PAX6!1.38!23.17!PAX6;;chr19:30863271..30863338,+!p1@ZNF536!1.38!22.86!ZNF536;;chr17:53342311..53342400,+!p1@HLF!1.36!25.34!HLF;;chr7:63505799..63505904,+!p1@ZNF727!1.35!21.31!ZNF727;;chr12:106976774..106976788,+!p1@RFX4!1.33!20.48!RFX4;;chr6:19837592..19837621,+!p1@ID4!1.32!119.78!ID4;;chr1:61548069..61548102,+!p3@NFIA!1.32!47.58!NFIA;;chr10:64134120..64134183,+!p1@ZNF365!1.32!24.10!ZNF365;;chr14:33408072..33408114,+!p2@NPAS3!1.31!22.76!NPAS3;;chr19:46800289..46800327,+!p2@HIF3A!1.31!19.34!HIF3A;;chr14:29235961..29236008,+!p1@FOXG1!1.30!19.03!FOXG1;;chr14:33403881..33403924,+!p1@NPAS3!1.30!18.93!NPAS3;;chr14:29234581..29234601,+!p2@FOXG1!1.30!18.82!FOXG1;;chr22:41763452..41763466,+!p2@TEF!1.29!18.31!TEF;;chr2:214016314..214016343,-!p2@IKZF2!1.26!28.96!IKZF2;;chr12:26277929..26277955,-!p3@BHLHE41!1.26!24.41!BHLHE41;;chr16:51185172..51185197,-!p1@SALL1!1.26!17.07!SALL1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.25!16.96!ZBED1;;chr2:95963120..95963136,+!p2@KCNIP3!1.25!16.76!KCNIP3;;chr17:38219209..38219230,+!p1@THRA!1.24!209.14!THRA;;chr2:166326200..166326216,+!p1@CSRNP3!1.24!23.89!CSRNP3;;chr3:114819124..114819200,-!p3@ZBTB20!1.23!36.51!ZBTB20;;chr16:51185318..51185348,-!p2@SALL1!1.21!15.20!SALL1;;chr2:178128250..178128293,-!p6@NFE2L2!1.20!37.24!NFE2L2;;chr3:126076264..126076305,-!p2@KLF15!1.20!20.58!KLF15;;chr10:119302232..119302265,+!p1@EMX2!1.20!14.79!EMX2;;chr7:115670804..115670825,-!p1@TFEC!1.20!14.79!TFEC;;chr17:7492684..7492778,-!p2@SOX15!1.19!30.51!SOX15;;chr4:26344778..26344807,+!p8@RBPJ!1.19!14.58!RBPJ;;chr19:21512115..21512135,-!p3@ZNF708!1.18!28.75!ZNF708;;chr13:72441315..72441454,-!p1@DACH1!1.18!28.44!DACH1;;chr8:40755333..40755352,-!p1@ZMAT4!1.18!14.17!ZMAT4;;chr12:103351444..103351461,+!p1@ASCL1!1.18!14.07!ASCL1;;chr19:21512144..21512191,-!p2@ZNF708!1.16!62.58!ZNF708;;chr16:79634624..79634642,-!p1@MAF!1.16!53.06!MAF;;chr14:73360799..73360817,-!p1@DPF3!1.16!46.13!DPF3;;chr11:113930401..113930422,+!p3@ZBTB16!1.16!13.34!ZBTB16;;chrX:82763292..82763317,+!p1@POU3F4!1.16!13.34!POU3F4;;chr17:70117153..70117174,+!p1@SOX9!1.15!135.19!SOX9;;chr7:28725740..28725778,+!p1@CREB5!1.15!115.95!CREB5;;chr11:113930291..113930339,+!p2@ZBTB16!1.15!21.41!ZBTB16;;chr14:33403648..33403710,+!p3@NPAS3!1.15!13.24!NPAS3;;chr8:53322411..53322422,-!p6@ST18!1.14!12.93!ST18;;chr4:26344754..26344772,+!p10@RBPJ!1.14!12.83!RBPJ;;chr1:40105299..40105326,-!p1@HEYL!1.13!12.62!HEYL;;chr2:145275982..145276003,-!p7@ZEB2!1.13!12.52!ZEB2;;chr17:47439437..47439533,-!p1@ZNF652!1.12!98.88!ZNF652;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.12!12.31!SMARCE1;;chr15:57511609..57511651,+!p2@TCF12!1.11!20.07!TCF12;;chr6:126112074..126112144,+!p1@NCOA7!1.09!149.98!NCOA7;;chr19:38085768..38085821,+!p1@ZNF540!1.09!16.96!ZNF540;;chr16:67198633..67198671,+!p1@HSF4!1.09!11.38!HSF4;;chrX:25034067..25034088,-!p1@ARX!1.09!11.38!ARX;;chr20:21494654..21494678,-!p2@NKX2-2!1.09!11.17!NKX2-2;;chr5:71803177..71803255,-!p1@ZNF366!1.08!10.96!ZNF366;;chr6:28321971..28321995,-!p1@ZNF323!1.08!10.96!ZNF323;;chr19:57019215..57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OX1;;chr22:42739533..42739586,-!p2@ENST00000515426!0.66!3.62!TCF20;;chr2:16080659..16080685,+!p1@MYCN!0.66!3.62!MYCN;;chr2:45168875..45168916,+!p1@SIX3!0.66!3.62!SIX3;;chr4:149363637..149363651,-!p4@NR3C2!0.66!3.62!NR3C2;;chr17:38256822..38256851,-!p1@NR1D1!0.65!31.44!NR1D1;;chr3:48282587..48282603,+!p1@ZNF589!0.65!17.79!ZNF589;;chr20:3388579..3388619,-!p3@C20orf194!0.65!9.21!C20orf194;;chr3:114866124..114866149,-!p5@ZBTB20!0.65!6.31!ZBTB20;;chr3:25469724..25469773,+!p1@RARB!0.65!5.28!RARB;;chr2:176033027..176033050,-!p3@ATF2!0.65!5.07!ATF2;;chr19:49139477..49139552,-!p4@DBP!0.65!4.55!DBP;;chr2:45168997..45169020,+!p4@SIX3!0.65!3.52!SIX3;;chr3:147127177..147127194,+!p2@ZIC1!0.65!3.52!ZIC1;;chr5:2751762..2751784,-!p1@IRX2!0.65!3.52!IRX2;;chr10:31610110..31610159,+!p2@ZEB1!0.65!3.52!ZEB1;;chr11:8040739..8040815,+!p4@TUB!0.65!3.52!TUB;;chr13:45010939..45011033,-!p1@TSC22D1!0.64!263.34!TSC22D1;;chr2:48541789..48541874,+!p1@FOXN2!0.64!89.78!FOXN2;;chr10:63809106..63809127,+!p1@ARID5B!0.64!53.89!ARID5B;;chr15:77197655..77197716,-!p1@SCAPER!0.64!35.79!SCAPER;;chr4:140098339..140098392,-!p1@ELF2!0.64!32.58!ELF2;;chr19:21688387..21688432,+!p1@ZNF429!0.64!23.79!ZNF429;;chr19:3359257..3359362,+!p3@NFIC!0.64!11.38!NFIC;;chr8:123793959..123793977,+!p4@ZHX2!0.64!7.14!ZHX2;;chr19:38183208..38183225,-!p1@ZNF781!0.64!4.55!ZNF781;;chr6:99282438..99282457,+!p2@POU3F2!0.64!3.41!POU3F2;;chr16:51185149..51185160,-!p5@SALL1!0.64!3.41!SALL1;;chr3:141150883..141150961,+!p6@ZBTB38!0.64!3.41!ZBTB38;;chr10:119302182..119302196,+!p6@EMX2!0.64!3.41!EMX2;;chr11:85393886..85393913,-!p3@CREBZF!0.64!3.41!CREBZF;;chr9:77112225..77112238,+!p2@RORB!0.64!3.41!RORB;;chrX:107019181..107019193,-!p10@TSC22D3!0.64!3.41!TSC22D3;;chr10:111967345..111967422,+!p1@MXI1!0.63!63.71!MXI1;;chr15:31619326..31619390,+!p2@KLF13!0.63!44.89!KLF13;;chr9:20622478..20622525,-!p1@MLLT3!0.63!30.10!MLLT3;;chr2:145275162..145275202,-!p2@ZEB2!0.63!22.55!ZEB2;;chr2:178128199..178128245,-!p3@NFE2L2!0.63!20.38!NFE2L2;;chr10:38146510..38146576,-!p1@ZNF248!0.63!10.65!ZNF248;;chr1:61548374..61548415,+!p4@NFIA!0.63!6.62!NFIA;;chr7:113726357..113726443,+!p1@FOXP2!0.63!6.21!FOXP2;;chr2:180726254..180726275,-!p4@ZNF385B!0.63!3.31!ZNF385B;;chr2:2328299..2328363,-!p3@MYT1L!0.63!3.31!MYT1L;;chr15:61521495..61521506,-!p5@RORA!0.63!3.31!RORA;;chr15:80696824..80696835,+!p9@ARNT2!0.63!3.31!ARNT2;;chr1:61548225..61548299,+!p1@NFIA!0.62!49.65!NFIA;;chr9:20622444..20622468,-!p2@MLLT3!0.62!11.89!MLLT3;;chr19:42636586..42636607,-!p1@POU2F2!0.62!10.03!POU2F2;;chr1:151043266..151043295,+!p2@GABPB2!0.62!7.65!GABPB2;;chr18:53254566..53254567,-!p8@TCF4!0.62!5.59!TCF4;;chr9:2015275..2015287,+!p8@SMARCA2!0.62!5.48!SMARCA2;;chr15:57211634..57211657,+!p5@TCF12!0.62!5.17!TCF12;;chr18:52989565..52989623,-!p9@TCF4!0.62!4.24!TCF4;;chr7:28725715..28725727,+!p3@CREB5!0.62!3.83!CREB5;;chr6:28321909..28321965,-!p3@ZNF323!0.62!3.21!ZNF323;;chr8:93074803..93074845,-!p1@RUNX1T1!0.62!3.21!RUNX1T1;;chr10:64133862..64133884,+!p4@ZNF365!0.62!3.21!ZNF365;;chr10:64133934..64133954,+!p6@ZNF365!0.62!3.21!ZNF365;;chr9:104161123..104161205,+!p1@ZNF189!0.61!25.96!ZNF189;;chr16:1464688..1464728,-!p1@UNKL!0.61!25.55!UNKL;;chr14:74318611..74318682,+!p1@PTGR2,p2@ZNF410!0.61!25.34!ZNF410;;chrX:101975643..101975683,+!p1@BHLHB9!0.61!7.55!BHLHB9;;chr19:37341160..37341194,-!p2@ZNF790!0.61!7.34!ZNF790;;chr19:52839515..52839572,+!p1@ZNF610!0.61!7.34!ZNF610;;chr19:12405606..12405629,-!p2@ZNF44!0.61!6.62!ZNF44;;chr6:143266185..143266238,-!p2@HIVEP2!0.61!4.55!HIVEP2;;chr12:57914481..57914509,+!p5@MBD6!0.61!3.62!MBD6;;chr4:57522166..57522260,-!p2@HOPX!0.61!3.62!HOPX;;chr14:22005343..22005364,-!p5@SALL2!0.61!3.10!SALL2;;chr15:57210818..57210930,+!p1@TCF12!0.60!65.37!TCF12;;chr2:113033164..113033219,+!p1@ZC3H6!0.60!30.20!ZC3H6;;chr22:41777927..41777971,+!p1@TEF!0.60!30.10!TEF;;chr19:52901094..52901134,+!p1@ZNF528!0.60!23.89!ZNF528;;chr19:20150301..20150321,-!p1@ZNF682!0.60!8.79!ZNF682;;chr3:24536253..24536328,-!p1@THRB!0.60!6.21!THRB;;chr19:44331461..44331482,+!p3@ZNF283!0.60!5.28!ZNF283;;chr19:37464063..37464127,+!p2@ZNF568!0.60!4.14!ZNF568;;chr12:26278008..26278024,-!p4@BHLHE41!0.60!3.72!BHLHE41;;chr5:92919068..92919082,+!p5@NR2F1!0.60!3.72!NR2F1;;chr15:37392534..37392562,-!p10@MEIS2!0.60!3.31!MEIS2;;chr18:45935720..45935772,-!p1@ZBTB7C!0.60!3.00!ZBTB7C;;chr2:214016254..214016282,-!p7@IKZF2!0.60!3.00!IKZF2;;chr2:45168834..45168847,+!p2@SIX3!0.60!3.00!SIX3;;chr19:35759824..35759891,+!p1@USF2!0.59!110.67!USF2;;chr3:40566428..40566480,+!p1@ZNF621!0.59!27.51!ZNF621;;chr19:37407212..37407280,+!p1@ZNF568!0.59!13.86!ZNF568;;chr8:106330656..106330684,+!p1@ZFPM2!0.59!8.79!ZFPM2;;chr6:56954830..56954845,+!p3@ZNF451!0.59!7.03!ZNF451;;chr1:78445148..78445170,-!p6@FUBP1!0.59!3.72!FUBP1;;chr3:169381420..169381535,-!p1@MECOM!0.59!3.52!MECOM;;chr3:147111231..147111281,+!p3@ZIC1!0.59!2.90!ZIC1;;chr3:147111505..147111529,+!p6@ZIC1!0.59!2.90!ZIC1;;chr8:77593448..77593471,+!p2@ZFHX4!0.59!2.90!ZFHX4;;chr17:53344945..53344977,+!p2@HLF!0.59!2.90!HLF;;chr18:530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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001894;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010225
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10154-103A1
 |is_a=EFO:0002091;;FF:0000002;;FF:0010154
 |is_obsolete=
+|library_id=CNhs12314
+|library_id_phase_based=2:CNhs12314
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10154
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10154
 |name=thalamus, adult, donor10252
 |namespace=FANTOM5
@@ Line 44: / Line 62: @@
 |profile_cagescan=NCig10026,,,
 |profile_hcage=CNhs12314,LSID913,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=103
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@@ Line 59: / Line 80: @@
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 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 80: / Line 102: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10154-103A1;search_select_hide=table117:FF:10154-103A1
 }}

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FF:10154-103A1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:22, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0