FF:10168-103B6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004703 | ||
|accession_numbers=CAGE;DRX008741;DRR009613;DRZ001038;DRZ002423;DRZ012388;DRZ013773 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001897,UBERON:0001894,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002784,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001890,UBERON:0010225 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010154 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thalamus%2520-%2520adult%252c%2520donor10196.CNhs13794.10168-103B6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thalamus%2520-%2520adult%252c%2520donor10196.CNhs13794.10168-103B6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thalamus%2520-%2520adult%252c%2520donor10196.CNhs13794.10168-103B6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thalamus%2520-%2520adult%252c%2520donor10196.CNhs13794.10168-103B6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thalamus%2520-%2520adult%252c%2520donor10196.CNhs13794.10168-103B6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10168-103B6 | |id=FF:10168-103B6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010154 | ||
|is_obsolete= | |||
|library_id=CNhs13794 | |||
|library_id_phase_based=2:CNhs13794 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10168 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10168 | |||
|name=thalamus - adult, donor10196 | |name=thalamus - adult, donor10196 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 63: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=50.62875 | |rna_weight_ug=50.62875 | ||
|sample_age=60 | |sample_age=60 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.15504587112719e-279!GO:0005737;cytoplasm;1.32190665039978e-155!GO:0044444;cytoplasmic part;2.57703785970197e-106!GO:0043226;organelle;6.10535945679856e-101!GO:0043229;intracellular organelle;2.55380760148982e-100!GO:0043227;membrane-bound organelle;4.12232592899287e-93!GO:0043231;intracellular membrane-bound organelle;7.84293704503081e-93!GO:0044422;organelle part;2.23437528344641e-69!GO:0044446;intracellular organelle part;2.34933918063018e-68!GO:0032991;macromolecular complex;1.6684371692637e-60!GO:0005515;protein binding;2.72137295936902e-60!GO:0005739;mitochondrion;2.26438633580022e-49!GO:0030529;ribonucleoprotein complex;1.60943014446624e-44!GO:0016043;cellular component organization and biogenesis;1.32585627780095e-42!GO:0003723;RNA binding;2.83817989657701e-41!GO:0031090;organelle membrane;5.69461433325639e-39!GO:0044429;mitochondrial part;2.52964735672701e-36!GO:0033036;macromolecule localization;2.13893311357758e-35!GO:0015031;protein transport;5.96928927400596e-35!GO:0043234;protein complex;1.05120722148912e-32!GO:0043233;organelle lumen;1.90743643496501e-32!GO:0031974;membrane-enclosed lumen;1.90743643496501e-32!GO:0008104;protein localization;1.9387856848502e-32!GO:0045184;establishment of protein localization;5.20209375128301e-32!GO:0031975;envelope;1.73694151142343e-31!GO:0031967;organelle envelope;2.71934963126705e-31!GO:0046907;intracellular transport;1.38771838575949e-30!GO:0044238;primary metabolic process;1.21066053313069e-29!GO:0044428;nuclear part;1.97713858386387e-29!GO:0044237;cellular metabolic process;3.27199799199539e-29!GO:0005829;cytosol;9.02329997723517e-28!GO:0016071;mRNA metabolic process;2.50377054752563e-27!GO:0051649;establishment of cellular localization;1.33841864636166e-25!GO:0051641;cellular localization;1.90666772871738e-25!GO:0006396;RNA processing;2.32045556662573e-25!GO:0019538;protein metabolic process;2.35474089727512e-25!GO:0005740;mitochondrial envelope;3.48397482153286e-25!GO:0005840;ribosome;3.56234886044968e-25!GO:0031966;mitochondrial membrane;1.18573702727319e-24!GO:0008380;RNA splicing;1.49523159872688e-24!GO:0043170;macromolecule metabolic process;1.79440112009787e-24!GO:0019866;organelle inner membrane;2.91459888502295e-23!GO:0006397;mRNA processing;3.72472899442708e-23!GO:0044260;cellular macromolecule metabolic process;5.79801461136531e-23!GO:0016192;vesicle-mediated transport;1.68847236369346e-22!GO:0006886;intracellular protein transport;4.7759020663957e-22!GO:0006412;translation;4.89929696040397e-22!GO:0005743;mitochondrial inner membrane;5.15855963049279e-22!GO:0044267;cellular protein metabolic process;8.3337910037026e-22!GO:0006119;oxidative phosphorylation;9.08896335395553e-22!GO:0003735;structural constituent of ribosome;1.73354043531504e-21!GO:0009058;biosynthetic process;1.59302693231722e-20!GO:0005634;nucleus;6.14686557531657e-20!GO:0033279;ribosomal subunit;8.17376729112218e-19!GO:0044455;mitochondrial membrane part;2.39585062003462e-18!GO:0065003;macromolecular complex assembly;2.4121721162571e-17!GO:0006996;organelle organization and biogenesis;3.33866047489761e-17!GO:0044249;cellular biosynthetic process;4.78913269600713e-17!GO:0031981;nuclear lumen;6.87737007039563e-17!GO:0005794;Golgi apparatus;8.39676836384954e-17!GO:0009059;macromolecule biosynthetic process;1.37697362597231e-16!GO:0031982;vesicle;2.66069774870617e-16!GO:0005746;mitochondrial respiratory chain;3.88670907426219e-16!GO:0005681;spliceosome;4.5757961568994e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.95688130024738e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;7.50287931014859e-16!GO:0000166;nucleotide binding;8.23200779050378e-16!GO:0016462;pyrophosphatase activity;8.78389531049255e-16!GO:0022607;cellular component assembly;1.41404196837e-15!GO:0031410;cytoplasmic vesicle;2.03258302727324e-15!GO:0050136;NADH dehydrogenase (quinone) activity;3.37248257945721e-15!GO:0003954;NADH dehydrogenase activity;3.37248257945721e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.37248257945721e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.5231056881278e-15!GO:0017111;nucleoside-triphosphatase activity;6.28625207663822e-15!GO:0031988;membrane-bound vesicle;1.28811898483627e-14!GO:0031980;mitochondrial lumen;2.50565802393675e-14!GO:0005759;mitochondrial matrix;2.50565802393675e-14!GO:0012505;endomembrane system;3.00668524714623e-14!GO:0016023;cytoplasmic membrane-bound vesicle;8.91434359928458e-14!GO:0030964;NADH dehydrogenase complex (quinone);2.69072264776304e-13!GO:0045271;respiratory chain complex I;2.69072264776304e-13!GO:0005747;mitochondrial respiratory chain complex I;2.69072264776304e-13!GO:0006457;protein folding;2.77147466495302e-13!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.8099039128716e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.76842981431121e-13!GO:0042773;ATP synthesis coupled electron transport;4.76842981431121e-13!GO:0044445;cytosolic part;6.1033592506378e-13!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.45086595497649e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.21399986728436e-13!GO:0048770;pigment granule;3.76223562388417e-12!GO:0042470;melanosome;3.76223562388417e-12!GO:0043283;biopolymer metabolic process;1.07982860425166e-11!GO:0022618;protein-RNA complex assembly;1.31936077621682e-11!GO:0016874;ligase activity;2.92190293244664e-11!GO:0006512;ubiquitin cycle;3.18156769674731e-11!GO:0005654;nucleoplasm;4.00260266767612e-11!GO:0043228;non-membrane-bound organelle;4.30782465535504e-11!GO:0043232;intracellular non-membrane-bound organelle;4.30782465535504e-11!GO:0010467;gene expression;6.55545095492758e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.3586025868727e-11!GO:0003924;GTPase activity;7.63113962454002e-11!GO:0032553;ribonucleotide binding;8.04187781830996e-11!GO:0032555;purine ribonucleotide binding;8.04187781830996e-11!GO:0048193;Golgi vesicle transport;8.04187781830996e-11!GO:0051082;unfolded protein binding;1.79087232214897e-10!GO:0017076;purine nucleotide binding;2.14680323229041e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;2.21261623163965e-10!GO:0015935;small ribosomal subunit;2.53746894162348e-10!GO:0044265;cellular macromolecule catabolic process;2.57797326477586e-10!GO:0006605;protein targeting;2.60423038747937e-10!GO:0006511;ubiquitin-dependent protein catabolic process;3.08901068372006e-10!GO:0044257;cellular protein catabolic process;3.56798774388612e-10!GO:0019941;modification-dependent protein catabolic process;3.68353863467635e-10!GO:0043632;modification-dependent macromolecule catabolic process;3.68353863467635e-10!GO:0005783;endoplasmic reticulum;3.68353863467635e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.92084990576588e-10!GO:0044451;nucleoplasm part;6.07472992939293e-10!GO:0019829;cation-transporting ATPase activity;1.26886998476659e-09!GO:0008135;translation factor activity, nucleic acid binding;1.43499745347761e-09!GO:0016044;membrane organization and biogenesis;2.13169063675521e-09!GO:0015934;large ribosomal subunit;2.59928547037302e-09!GO:0000502;proteasome complex (sensu Eukaryota);2.88812755250353e-09!GO:0043412;biopolymer modification;3.00628964497224e-09!GO:0043687;post-translational protein modification;4.20735774427205e-09!GO:0051186;cofactor metabolic process;4.62117942877038e-09!GO:0045045;secretory pathway;4.83142170580831e-09!GO:0044248;cellular catabolic process;6.40337336929484e-09!GO:0006464;protein modification process;8.01015640759194e-09!GO:0008565;protein transporter activity;1.29816390658708e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.43147923929806e-08!GO:0005768;endosome;1.6095948732996e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;1.6095948732996e-08!GO:0000375;RNA splicing, via transesterification reactions;1.6095948732996e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.6095948732996e-08!GO:0043285;biopolymer catabolic process;1.80129072801457e-08!GO:0005525;GTP binding;2.95895471955095e-08!GO:0006793;phosphorus metabolic process;3.0701838621952e-08!GO:0006796;phosphate metabolic process;3.0701838621952e-08!GO:0008092;cytoskeletal protein binding;4.16984722749149e-08!GO:0030163;protein catabolic process;4.54343720447274e-08!GO:0008134;transcription factor binding;6.83811644745238e-08!GO:0015986;ATP synthesis coupled proton transport;6.83811644745238e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.83811644745238e-08!GO:0016604;nuclear body;7.54775532513078e-08!GO:0005761;mitochondrial ribosome;8.01977317815331e-08!GO:0000313;organellar ribosome;8.01977317815331e-08!GO:0007264;small GTPase mediated signal transduction;8.78982018064327e-08!GO:0006413;translational initiation;1.038827139e-07!GO:0006446;regulation of translational initiation;1.18181035500284e-07!GO:0007010;cytoskeleton organization and biogenesis;1.40339738409395e-07!GO:0016607;nuclear speck;1.49319825420398e-07!GO:0006810;transport;1.56594449981154e-07!GO:0009057;macromolecule catabolic process;1.60174041997513e-07!GO:0006461;protein complex assembly;2.4955862314592e-07!GO:0031965;nuclear membrane;2.9039173696461e-07!GO:0003743;translation initiation factor activity;3.40228711467331e-07!GO:0048523;negative regulation of cellular process;3.60539269128839e-07!GO:0005635;nuclear envelope;3.80324554599744e-07!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.80324554599744e-07!GO:0009060;aerobic respiration;3.89085937004138e-07!GO:0006913;nucleocytoplasmic transport;5.18184825869058e-07!GO:0030695;GTPase regulator activity;5.39380868427764e-07!GO:0015631;tubulin binding;6.20507395288338e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;7.22312060087218e-07!GO:0032561;guanyl ribonucleotide binding;7.61710071141835e-07!GO:0019001;guanyl nucleotide binding;7.61710071141835e-07!GO:0051169;nuclear transport;8.1901066662562e-07!GO:0015630;microtubule cytoskeleton;9.00890799780281e-07!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.01270071433075e-06!GO:0044431;Golgi apparatus part;1.03030426131513e-06!GO:0051179;localization;1.32303763928215e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.52950740286149e-06!GO:0006754;ATP biosynthetic process;1.56937344187873e-06!GO:0006753;nucleoside phosphate metabolic process;1.56937344187873e-06!GO:0045333;cellular respiration;1.58123681677495e-06!GO:0006732;coenzyme metabolic process;1.64843929343136e-06!GO:0006897;endocytosis;1.91591506074195e-06!GO:0010324;membrane invagination;1.91591506074195e-06!GO:0005730;nucleolus;2.03976841014652e-06!GO:0044432;endoplasmic reticulum part;2.04358781743358e-06!GO:0048471;perinuclear region of cytoplasm;2.06013173596787e-06!GO:0006164;purine nucleotide biosynthetic process;2.06606002116879e-06!GO:0046034;ATP metabolic process;2.21985957242805e-06!GO:0006163;purine nucleotide metabolic process;2.67390925181013e-06!GO:0032940;secretion by cell;2.76434247294984e-06!GO:0009152;purine ribonucleotide biosynthetic process;2.9116120906943e-06!GO:0048475;coated membrane;3.50518668555149e-06!GO:0030117;membrane coat;3.50518668555149e-06!GO:0008287;protein serine/threonine phosphatase complex;3.63065706049883e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.68529225819779e-06!GO:0030135;coated vesicle;3.68529225819779e-06!GO:0009150;purine ribonucleotide metabolic process;3.91282889362582e-06!GO:0008639;small protein conjugating enzyme activity;4.05158396277685e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.15289764535324e-06!GO:0009144;purine nucleoside triphosphate metabolic process;5.15289764535324e-06!GO:0004842;ubiquitin-protein ligase activity;5.47636318235784e-06!GO:0005083;small GTPase regulator activity;5.65327286775457e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.82284936990864e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.82284936990864e-06!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.90498626691604e-06!GO:0009199;ribonucleoside triphosphate metabolic process;5.96562813983543e-06!GO:0005905;coated pit;6.06480278698766e-06!GO:0009055;electron carrier activity;6.09950339914549e-06!GO:0009141;nucleoside triphosphate metabolic process;6.34059455426807e-06!GO:0009259;ribonucleotide metabolic process;6.55147578822281e-06!GO:0019787;small conjugating protein ligase activity;6.57434679401854e-06!GO:0031252;leading edge;6.57434679401854e-06!GO:0009142;nucleoside triphosphate biosynthetic process;6.90075572922668e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.90075572922668e-06!GO:0030036;actin cytoskeleton organization and biogenesis;6.95222895963084e-06!GO:0045259;proton-transporting ATP synthase complex;7.41605904896444e-06!GO:0032559;adenyl ribonucleotide binding;7.92359180202278e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.08921753673919e-06!GO:0048519;negative regulation of biological process;9.22706308659326e-06!GO:0006099;tricarboxylic acid cycle;9.7204990189838e-06!GO:0046356;acetyl-CoA catabolic process;9.7204990189838e-06!GO:0016310;phosphorylation;1.01284819969583e-05!GO:0009260;ribonucleotide biosynthetic process;1.01387410275921e-05!GO:0051234;establishment of localization;1.01740935683188e-05!GO:0019899;enzyme binding;1.21094927301192e-05!GO:0005874;microtubule;1.37043869181794e-05!GO:0005524;ATP binding;1.64859336638738e-05!GO:0009109;coenzyme catabolic process;1.70030870336782e-05!GO:0016887;ATPase activity;1.73235493562965e-05!GO:0012501;programmed cell death;1.78591142629664e-05!GO:0030554;adenyl nucleotide binding;1.79438955626559e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.81056586359409e-05!GO:0006915;apoptosis;1.865894212804e-05!GO:0051246;regulation of protein metabolic process;1.93545630301314e-05!GO:0008219;cell death;2.23993050871968e-05!GO:0016265;death;2.23993050871968e-05!GO:0044440;endosomal part;2.35695644175971e-05!GO:0010008;endosome membrane;2.35695644175971e-05!GO:0005789;endoplasmic reticulum membrane;2.40292840942918e-05!GO:0017038;protein import;2.42611639860593e-05!GO:0030120;vesicle coat;2.65694189559795e-05!GO:0030662;coated vesicle membrane;2.65694189559795e-05!GO:0009056;catabolic process;2.92027976833339e-05!GO:0000139;Golgi membrane;3.23371656012423e-05!GO:0051187;cofactor catabolic process;3.43448480589492e-05!GO:0016881;acid-amino acid ligase activity;3.5491418602961e-05!GO:0044453;nuclear membrane part;3.61600641032305e-05!GO:0005770;late endosome;3.77273881284419e-05!GO:0008017;microtubule binding;4.19556328832549e-05!GO:0051188;cofactor biosynthetic process;4.56078707815667e-05!GO:0006084;acetyl-CoA metabolic process;4.6566641701264e-05!GO:0019717;synaptosome;4.66177933195411e-05!GO:0030029;actin filament-based process;5.12643344667975e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;5.17223217420595e-05!GO:0015399;primary active transmembrane transporter activity;5.17223217420595e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.18666664525837e-05!GO:0042623;ATPase activity, coupled;6.70269763974419e-05!GO:0000245;spliceosome assembly;6.85943430642531e-05!GO:0045786;negative regulation of progression through cell cycle;7.41002482194936e-05!GO:0016564;transcription repressor activity;9.83459333006889e-05!GO:0006888;ER to Golgi vesicle-mediated transport;0.000102091627084433!GO:0005769;early endosome;0.000108170046768124!GO:0030133;transport vesicle;0.000109527689701531!GO:0051128;regulation of cellular component organization and biogenesis;0.000117246173562619!GO:0005643;nuclear pore;0.000132668805565612!GO:0043005;neuron projection;0.000152847256943346!GO:0007242;intracellular signaling cascade;0.000170011172295709!GO:0006752;group transfer coenzyme metabolic process;0.000184663651914441!GO:0000159;protein phosphatase type 2A complex;0.000202300110706709!GO:0006403;RNA localization;0.000214197701142452!GO:0050657;nucleic acid transport;0.000224484282767945!GO:0051236;establishment of RNA localization;0.000224484282767945!GO:0050658;RNA transport;0.000224484282767945!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000260863687353727!GO:0005798;Golgi-associated vesicle;0.000269666814077163!GO:0005773;vacuole;0.000270013821470269!GO:0043492;ATPase activity, coupled to movement of substances;0.000277472137589072!GO:0008654;phospholipid biosynthetic process;0.000296047862449443!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000313568490316105!GO:0032446;protein modification by small protein conjugation;0.000319727499066114!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000334358716206513!GO:0003712;transcription cofactor activity;0.000337617580642758!GO:0007399;nervous system development;0.00036274694293176!GO:0000902;cell morphogenesis;0.000366832471692086!GO:0032989;cellular structure morphogenesis;0.000366832471692086!GO:0008047;enzyme activator activity;0.000382345093381433!GO:0005096;GTPase activator activity;0.000386028328799738!GO:0043069;negative regulation of programmed cell death;0.000391748502259466!GO:0003779;actin binding;0.000395974710008411!GO:0006613;cotranslational protein targeting to membrane;0.000404151168389538!GO:0016791;phosphoric monoester hydrolase activity;0.000410974242721296!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000424708260809018!GO:0043066;negative regulation of apoptosis;0.000436867770048997!GO:0022890;inorganic cation transmembrane transporter activity;0.000485173214216611!GO:0005741;mitochondrial outer membrane;0.000553202215192099!GO:0008601;protein phosphatase type 2A regulator activity;0.000567484452594673!GO:0016567;protein ubiquitination;0.000568159529988915!GO:0030532;small nuclear ribonucleoprotein complex;0.000571073246283724!GO:0004721;phosphoprotein phosphatase activity;0.000588403426842611!GO:0006259;DNA metabolic process;0.000608957334866354!GO:0051170;nuclear import;0.000693283097400913!GO:0006606;protein import into nucleus;0.000715466135499464!GO:0016311;dephosphorylation;0.000742470649683078!GO:0016197;endosome transport;0.000761152734804906!GO:0006916;anti-apoptosis;0.00080780005268955!GO:0048468;cell development;0.000906301719389044!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000945706065122248!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000978395973525126!GO:0031072;heat shock protein binding;0.00103250062617577!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00108549644907574!GO:0006650;glycerophospholipid metabolic process;0.00108828084889405!GO:0009108;coenzyme biosynthetic process;0.00109909590268025!GO:0019867;outer membrane;0.00110916198980306!GO:0031968;organelle outer membrane;0.0011466098278547!GO:0015980;energy derivation by oxidation of organic compounds;0.00117891430667054!GO:0016050;vesicle organization and biogenesis;0.00118222826203192!GO:0003714;transcription corepressor activity;0.00120406881704486!GO:0003724;RNA helicase activity;0.00127374690292046!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00131321783190824!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00133802502106287!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00136570040762821!GO:0007019;microtubule depolymerization;0.00137571468192197!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00140028109775565!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00140028109775565!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00140028109775565!GO:0030867;rough endoplasmic reticulum membrane;0.00140881172586335!GO:0030118;clathrin coat;0.00144700140911712!GO:0000323;lytic vacuole;0.00149731966017664!GO:0005764;lysosome;0.00149731966017664!GO:0031901;early endosome membrane;0.00154370679788987!GO:0006607;NLS-bearing substrate import into nucleus;0.00159947294732104!GO:0005793;ER-Golgi intermediate compartment;0.00161703162039516!GO:0046467;membrane lipid biosynthetic process;0.00162560796808982!GO:0009117;nucleotide metabolic process;0.00162560796808982!GO:0030136;clathrin-coated vesicle;0.00163869513455141!GO:0005875;microtubule associated complex;0.0017281385283913!GO:0006470;protein amino acid dephosphorylation;0.00177199697139723!GO:0016070;RNA metabolic process;0.00183845964394116!GO:0003729;mRNA binding;0.00186137845250379!GO:0030027;lamellipodium;0.00188969489233981!GO:0043623;cellular protein complex assembly;0.00207765369923548!GO:0005791;rough endoplasmic reticulum;0.00212322984775945!GO:0009966;regulation of signal transduction;0.0021665859022401!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00223934494451589!GO:0004667;prostaglandin-D synthase activity;0.00223934494451589!GO:0050802;circadian sleep/wake cycle, sleep;0.00223934494451589!GO:0022410;circadian sleep/wake cycle process;0.00223934494451589!GO:0042749;regulation of circadian sleep/wake cycle;0.00223934494451589!GO:0006323;DNA packaging;0.00225357882980631!GO:0005839;proteasome core complex (sensu Eukaryota);0.00228638863783127!GO:0051028;mRNA transport;0.00231351792742373!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00231351792742373!GO:0004812;aminoacyl-tRNA ligase activity;0.00231351792742373!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00231351792742373!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00239369214656826!GO:0030426;growth cone;0.00249433709175918!GO:0006366;transcription from RNA polymerase II promoter;0.00268254547598869!GO:0046870;cadmium ion binding;0.00287958838588978!GO:0043038;amino acid activation;0.00288996622267432!GO:0006418;tRNA aminoacylation for protein translation;0.00288996622267432!GO:0043039;tRNA aminoacylation;0.00288996622267432!GO:0030425;dendrite;0.00296137037827369!GO:0065002;intracellular protein transport across a membrane;0.00300265675547291!GO:0012506;vesicle membrane;0.00309377986424626!GO:0019208;phosphatase regulator activity;0.00314102674261735!GO:0008361;regulation of cell size;0.00315326603765752!GO:0051087;chaperone binding;0.00315430658884565!GO:0043566;structure-specific DNA binding;0.00317194972071615!GO:0016126;sterol biosynthetic process;0.00320199390854793!GO:0007017;microtubule-based process;0.00330824118032341!GO:0030427;site of polarized growth;0.00335328098903237!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.0033631275849682!GO:0007265;Ras protein signal transduction;0.00351221881859009!GO:0000151;ubiquitin ligase complex;0.00369743221125474!GO:0008610;lipid biosynthetic process;0.0037776206452!GO:0007243;protein kinase cascade;0.00411665192338409!GO:0000314;organellar small ribosomal subunit;0.00426944136109327!GO:0005763;mitochondrial small ribosomal subunit;0.00426944136109327!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00426944136109327!GO:0031114;regulation of microtubule depolymerization;0.00447225487253514!GO:0007026;negative regulation of microtubule depolymerization;0.00447225487253514!GO:0003676;nucleic acid binding;0.0049221680073037!GO:0051726;regulation of cell cycle;0.00497903188282526!GO:0004386;helicase activity;0.00502130273681179!GO:0022406;membrane docking;0.00533171223338056!GO:0048278;vesicle docking;0.00533171223338056!GO:0008139;nuclear localization sequence binding;0.00535344546416573!GO:0019902;phosphatase binding;0.00543268556062626!GO:0031109;microtubule polymerization or depolymerization;0.00552343669145578!GO:0006414;translational elongation;0.00552406786217335!GO:0007005;mitochondrion organization and biogenesis;0.0056291513870318!GO:0004722;protein serine/threonine phosphatase activity;0.00567032441729878!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00576851854486478!GO:0043209;myelin sheath;0.00587962408632092!GO:0005048;signal sequence binding;0.00615380877648604!GO:0046930;pore complex;0.00615380877648604!GO:0003697;single-stranded DNA binding;0.00620549250678151!GO:0030658;transport vesicle membrane;0.00636587094754533!GO:0016049;cell growth;0.00655690168416628!GO:0050839;cell adhesion molecule binding;0.00660505119958806!GO:0031124;mRNA 3'-end processing;0.00665041614879762!GO:0001726;ruffle;0.00678816300102965!GO:0006402;mRNA catabolic process;0.00683924257444149!GO:0000074;regulation of progression through cell cycle;0.00684589847425695!GO:0051168;nuclear export;0.00695664214441092!GO:0006091;generation of precursor metabolites and energy;0.00715319169893952!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00716143500737516!GO:0048489;synaptic vesicle transport;0.00724008959452376!GO:0006612;protein targeting to membrane;0.00729525624491517!GO:0008026;ATP-dependent helicase activity;0.00731093625324809!GO:0051920;peroxiredoxin activity;0.00732249870412257!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00733509304514501!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00733509304514501!GO:0048487;beta-tubulin binding;0.00745683374560313!GO:0033673;negative regulation of kinase activity;0.00786521366967093!GO:0006469;negative regulation of protein kinase activity;0.00786521366967093!GO:0051056;regulation of small GTPase mediated signal transduction;0.00786521366967093!GO:0016568;chromatin modification;0.00811647824774452!GO:0005762;mitochondrial large ribosomal subunit;0.00830064828402646!GO:0000315;organellar large ribosomal subunit;0.00830064828402646!GO:0007272;ensheathment of neurons;0.00832654079766037!GO:0008366;axon ensheathment;0.00832654079766037!GO:0005813;centrosome;0.00857828659257522!GO:0006643;membrane lipid metabolic process;0.00865013573854579!GO:0048500;signal recognition particle;0.0088290720460178!GO:0030132;clathrin coat of coated pit;0.00892231961316464!GO:0050767;regulation of neurogenesis;0.00893329690044978!GO:0004298;threonine endopeptidase activity;0.00900550606073082!GO:0044433;cytoplasmic vesicle part;0.00900550606073082!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00928163210783153!GO:0019888;protein phosphatase regulator activity;0.00936519201616523!GO:0006904;vesicle docking during exocytosis;0.00945147481880779!GO:0005938;cell cortex;0.0098035797280824!GO:0042578;phosphoric ester hydrolase activity;0.00986127264539194!GO:0050811;GABA receptor binding;0.0098692853308959!GO:0007049;cell cycle;0.00995555788592475!GO:0009165;nucleotide biosynthetic process;0.0101198020654399!GO:0030660;Golgi-associated vesicle membrane;0.0102495248121851!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0102866685489471!GO:0030384;phosphoinositide metabolic process;0.0104986447542006!GO:0042254;ribosome biogenesis and assembly;0.0108880481514023!GO:0005885;Arp2/3 protein complex;0.0110896379664754!GO:0050789;regulation of biological process;0.0112539583502374!GO:0009892;negative regulation of metabolic process;0.0113280992462094!GO:0031902;late endosome membrane;0.011359907513098!GO:0046474;glycerophospholipid biosynthetic process;0.0115184430820509!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0120165169840671!GO:0001508;regulation of action potential;0.0124396468107669!GO:0045055;regulated secretory pathway;0.0125179351337807!GO:0043021;ribonucleoprotein binding;0.0130668737048499!GO:0005100;Rho GTPase activator activity;0.0130981415209581!GO:0051348;negative regulation of transferase activity;0.0132255785326695!GO:0007050;cell cycle arrest;0.0134284629938!GO:0019887;protein kinase regulator activity;0.0134945456619403!GO:0016408;C-acyltransferase activity;0.0135468239912498!GO:0008186;RNA-dependent ATPase activity;0.0142442270568973!GO:0051540;metal cluster binding;0.0144322039818148!GO:0051536;iron-sulfur cluster binding;0.0144322039818148!GO:0006892;post-Golgi vesicle-mediated transport;0.0144484210607061!GO:0006818;hydrogen transport;0.0144865160800707!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0146570097767079!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0147467464679909!GO:0050794;regulation of cellular process;0.0154258040023245!GO:0016859;cis-trans isomerase activity;0.0154459830059084!GO:0030742;GTP-dependent protein binding;0.0156600060508011!GO:0006333;chromatin assembly or disassembly;0.0159940258921733!GO:0001505;regulation of neurotransmitter levels;0.0161264027750424!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0161402419604274!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0161587894158432!GO:0005868;cytoplasmic dynein complex;0.0163759046508486!GO:0008154;actin polymerization and/or depolymerization;0.0164925649333975!GO:0045296;cadherin binding;0.0169504831317998!GO:0005815;microtubule organizing center;0.0169843543502383!GO:0043086;negative regulation of catalytic activity;0.0170441534970287!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0176494010193908!GO:0001578;microtubule bundle formation;0.0177027752975622!GO:0005085;guanyl-nucleotide exchange factor activity;0.0182151578662887!GO:0007006;mitochondrial membrane organization and biogenesis;0.0183660256361868!GO:0051287;NAD binding;0.0183817882480966!GO:0001666;response to hypoxia;0.0184996164417125!GO:0008286;insulin receptor signaling pathway;0.0188634426013869!GO:0006891;intra-Golgi vesicle-mediated transport;0.0191604289126667!GO:0030041;actin filament polymerization;0.0194332077890766!GO:0030258;lipid modification;0.0196613011466842!GO:0008312;7S RNA binding;0.0196613011466842!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0198793552854036!GO:0045047;protein targeting to ER;0.0198793552854036!GO:0006611;protein export from nucleus;0.0198793552854036!GO:0005869;dynactin complex;0.0198793552854036!GO:0043681;protein import into mitochondrion;0.0199181405753369!GO:0004860;protein kinase inhibitor activity;0.0199553380977984!GO:0009066;aspartate family amino acid metabolic process;0.0203406555634912!GO:0042802;identical protein binding;0.020422222916687!GO:0007034;vacuolar transport;0.0204308125213719!GO:0019783;small conjugating protein-specific protease activity;0.021006468026043!GO:0015992;proton transport;0.0211836528709309!GO:0009081;branched chain family amino acid metabolic process;0.0212384225261357!GO:0007269;neurotransmitter secretion;0.0213151378981531!GO:0031123;RNA 3'-end processing;0.0213151378981531!GO:0030659;cytoplasmic vesicle membrane;0.0222043964148435!GO:0006974;response to DNA damage stimulus;0.0223185663591098!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0233357653701505!GO:0031110;regulation of microtubule polymerization or depolymerization;0.0234510072992982!GO:0016301;kinase activity;0.0234636472289005!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0238137873079017!GO:0055083;monovalent inorganic anion homeostasis;0.0238137873079017!GO:0055064;chloride ion homeostasis;0.0238137873079017!GO:0030644;cellular chloride ion homeostasis;0.0238137873079017!GO:0000059;protein import into nucleus, docking;0.0243973367111471!GO:0044255;cellular lipid metabolic process;0.0251321980108255!GO:0043284;biopolymer biosynthetic process;0.0251321980108255!GO:0035035;histone acetyltransferase binding;0.0260980291056871!GO:0042026;protein refolding;0.0264371586615149!GO:0051427;hormone receptor binding;0.0267829423542569!GO:0019904;protein domain specific binding;0.027452016296627!GO:0003690;double-stranded DNA binding;0.0275221523007594!GO:0016272;prefoldin complex;0.027595626627088!GO:0051258;protein polymerization;0.0276663124567137!GO:0030137;COPI-coated vesicle;0.0277026586440544!GO:0008250;oligosaccharyl transferase complex;0.0277440002757738!GO:0051789;response to protein stimulus;0.0278105676850185!GO:0006986;response to unfolded protein;0.0278105676850185!GO:0006695;cholesterol biosynthetic process;0.0278105676850185!GO:0008180;signalosome;0.0280543535153751!GO:0004843;ubiquitin-specific protease activity;0.0282314424713706!GO:0004674;protein serine/threonine kinase activity;0.030141343786023!GO:0019911;structural constituent of myelin sheath;0.0302715788107342!GO:0031324;negative regulation of cellular metabolic process;0.0303113622679891!GO:0051261;protein depolymerization;0.0310401696677316!GO:0004221;ubiquitin thiolesterase activity;0.0312099031400239!GO:0030145;manganese ion binding;0.0313502522713816!GO:0031371;ubiquitin conjugating enzyme complex;0.0315460972751332!GO:0046489;phosphoinositide biosynthetic process;0.0315531970400438!GO:0051252;regulation of RNA metabolic process;0.0316544513918814!GO:0016740;transferase activity;0.0318478945717887!GO:0004004;ATP-dependent RNA helicase activity;0.0325169119551223!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0331228708331252!GO:0003725;double-stranded RNA binding;0.0332846934910543!GO:0016491;oxidoreductase activity;0.0335439087528198!GO:0003746;translation elongation factor activity;0.0341652722653304!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0341652722653304!GO:0019903;protein phosphatase binding;0.0351911202219944!GO:0015682;ferric iron transport;0.0351911202219944!GO:0015091;ferric iron transmembrane transporter activity;0.0351911202219944!GO:0031643;positive regulation of myelination;0.0351911202219944!GO:0042981;regulation of apoptosis;0.0355358079928135!GO:0030125;clathrin vesicle coat;0.0357891712295416!GO:0030665;clathrin coated vesicle membrane;0.0357891712295416!GO:0017091;AU-rich element binding;0.0361057701807371!GO:0050779;RNA destabilization;0.0361057701807371!GO:0000289;poly(A) tail shortening;0.0361057701807371!GO:0043067;regulation of programmed cell death;0.0370508889475499!GO:0019752;carboxylic acid metabolic process;0.0375661010235396!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0376364910826507!GO:0000287;magnesium ion binding;0.037761483225891!GO:0004576;oligosaccharyl transferase activity;0.0388792725734254!GO:0005099;Ras GTPase activator activity;0.0389299657367538!GO:0019894;kinesin binding;0.0392066596702013!GO:0004113;2',3'-cyclic-nucleotide 3'-phosphodiesterase activity;0.0393865493456653!GO:0009214;cyclic nucleotide catabolic process;0.0393865493456653!GO:0006629;lipid metabolic process;0.0394659828624336!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0395171942561099!GO:0005516;calmodulin binding;0.0395388583101634!GO:0030663;COPI coated vesicle membrane;0.0400633776635379!GO:0030126;COPI vesicle coat;0.0400633776635379!GO:0030569;chymotrypsin inhibitor activity;0.0404393740406346!GO:0044448;cell cortex part;0.0406755150758888!GO:0035257;nuclear hormone receptor binding;0.0407075247895931!GO:0030911;TPR domain binding;0.0408014913360989!GO:0001558;regulation of cell growth;0.0410589327220405!GO:0007266;Rho protein signal transduction;0.0412788214802356!GO:0046839;phospholipid dephosphorylation;0.041407552543852!GO:0019207;kinase regulator activity;0.0418526300371811!GO:0006082;organic acid metabolic process;0.0419731598337534!GO:0030127;COPII vesicle coat;0.0432667975019435!GO:0012507;ER to Golgi transport vesicle membrane;0.0432667975019435!GO:0006665;sphingolipid metabolic process;0.0432904838680061!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0434807831609782!GO:0015002;heme-copper terminal oxidase activity;0.0434807831609782!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0434807831609782!GO:0004129;cytochrome-c oxidase activity;0.0434807831609782!GO:0016481;negative regulation of transcription;0.0435653445737025!GO:0030139;endocytic vesicle;0.0436948360810452!GO:0000096;sulfur amino acid metabolic process;0.0439233871136922!GO:0032287;myelin maintenance in the peripheral nervous system;0.0441526868823447!GO:0032838;cell projection cytoplasm;0.0441526868823447!GO:0033081;regulation of T cell differentiation in the thymus;0.0441526868823447!GO:0043217;myelin maintenance;0.0441526868823447!GO:0060087;relaxation of vascular smooth muscle;0.0441526868823447!GO:0032839;dendrite cytoplasm;0.0441526868823447!GO:0048154;S100 beta binding;0.0442286128558103!GO:0006644;phospholipid metabolic process;0.0445672609809746!GO:0051539;4 iron, 4 sulfur cluster binding;0.0448549186685528!GO:0006383;transcription from RNA polymerase III promoter;0.0448549186685528!GO:0065009;regulation of a molecular function;0.044900618984953!GO:0006399;tRNA metabolic process;0.0450137254433379!GO:0016787;hydrolase activity;0.045042975886875!GO:0032981;mitochondrial respiratory chain complex I assembly;0.045042975886875!GO:0010257;NADH dehydrogenase complex assembly;0.045042975886875!GO:0033108;mitochondrial respiratory chain complex assembly;0.045042975886875!GO:0043254;regulation of protein complex assembly;0.0460858479656301!GO:0016579;protein deubiquitination;0.0466412242180224!GO:0006378;mRNA polyadenylation;0.0470368409111361!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0479836294934648!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0479836294934648!GO:0030276;clathrin binding;0.0491973377429576!GO:0005784;translocon complex;0.0494788943178368!GO:0016363;nuclear matrix;0.0494788943178368 | |||
|sample_id=10168 | |sample_id=10168 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=thalamus | |sample_tissue=thalamus | ||
|top_motifs=SOX2:3.62590108079;SOX5:3.4978851229;NFIX:2.9743574287;REST:2.95051543414;GATA4:2.87000238447;NHLH1,2:2.77982191925;ATF2:2.73290360845;CUX2:2.66912391609;NKX3-2:2.61669252947;MYFfamily:2.61622000499;DBP:2.58715361436;FOXP3:2.53571623413;HBP1_HMGB_SSRP1_UBTF:2.52026269366;MTF1:2.49768084042;ZFP161:2.492362242;SOX17:2.46140285724;RREB1:2.42018751987;SOX{8,9,10}:2.32290717896;MED-1{core}:2.28729809636;MTE{core}:2.25206219923;OCT4_SOX2{dimer}:2.2062306044;NR3C1:2.20201626517;PRRX1,2:2.18793711057;JUN:2.15518370065;XBP1:2.12991312099;HIC1:2.05500281273;PRDM1:2.05310769558;LMO2:2.0183448015;NKX6-1,2:2.01763624114;RFX1:1.97402434803;ZBTB6:1.93065232656;TGIF1:1.89109090202;SMAD1..7,9:1.78073987893;NANOG:1.77991925372;FOXP1:1.77606867481;PDX1:1.75072798622;HOXA9_MEIS1:1.74406285457;GFI1B:1.71696948977;BPTF:1.69893489261;ZNF384:1.67443057145;GTF2I:1.66171280285;RFX2..5_RFXANK_RFXAP:1.64320432135;LEF1_TCF7_TCF7L1,2:1.62638452005;PAX6:1.62062995569;FOXM1:1.58734274438;POU6F1:1.46312731947;EGR1..3:1.43046949682;ARID5B:1.41293681372;TFAP2B:1.38366224533;ONECUT1,2:1.32927715547;ZBTB16:1.32394093911;KLF4:1.28772737829;RBPJ:1.2757383236;MZF1:1.27325056804;STAT1,3:1.25188733131;PATZ1:1.24417952259;STAT2,4,6:1.19549536173;RORA:1.19023679764;MAZ:1.18878235963;FOXD3:1.18710686871;AHR_ARNT_ARNT2:1.15875286121;T:1.15512386281;BREu{core}:1.15009609584;ESRRA:1.12948340122;MAFB:1.10787577973;GCM1,2:1.10559244657;HOX{A4,D4}:1.08986710453;AR:1.0679043972;FOX{F1,F2,J1}:0.985282615855;TFAP2{A,C}:0.956489061938;LHX3,4:0.951007380159;EP300:0.947262998909;NRF1:0.936638598952;PAX5:0.934186191449;IKZF2:0.927289558342;FOXL1:0.903015065433;MYBL2:0.894427644953;TLX2:0.875642354892;SP1:0.85308168348;TLX1..3_NFIC{dimer}:0.850223543355;FOX{D1,D2}:0.838570638964;ADNP_IRX_SIX_ZHX:0.809603085121;ZNF423:0.799992663123;CRX:0.791919628932;ALX1:0.779534740727;EBF1:0.76091051917;POU5F1:0.647630967511;FOXQ1:0.645186658805;CDC5L:0.642389790087;PAX4:0.626899021448;HOX{A6,A7,B6,B7}:0.624905363148;SREBF1,2:0.613538624715;ZNF143:0.607189492522;GZF1:0.586329894917;PAX2:0.575391379059;SPZ1:0.537085581016;CREB1:0.524007970561;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.511132406851;NKX2-3_NKX2-5:0.474071358429;PBX1:0.463136841625;GFI1:0.461498962851;HMX1:0.432716821572;POU3F1..4:0.430691359613;PITX1..3:0.424117518897;TFDP1:0.420090756766;IRF7:0.401782307197;TOPORS:0.381320086915;DMAP1_NCOR{1,2}_SMARC:0.377923596067;MEF2{A,B,C,D}:0.371537421764;ZEB1:0.351783440517;NKX3-1:0.310420435633;HMGA1,2:0.285937051502;HAND1,2:0.266829171384;NFIL3:0.225702008935;NKX2-1,4:0.199225143942;ATF5_CREB3:0.183351153057;ZNF238:0.116174913362;FOXO1,3,4:0.114816514106;NFE2L1:0.106359781155;ZIC1..3:0.0172196664448;POU1F1:-0.0257939947398;GTF2A1,2:-0.0303389693631;CEBPA,B_DDIT3:-0.0808676942558;PAX8:-0.102533879822;ATF4:-0.108330270346;NFY{A,B,C}:-0.11287819525;IRF1,2:-0.11571016363;FOXA2:-0.117105150954;YY1:-0.191686083531;EVI1:-0.217049130434;UFEwm:-0.235337338993;NFE2L2:-0.237202987047;FOXN1:-0.26246215033;bHLH_family:-0.288483699083;NANOG{mouse}:-0.306402310003;VSX1,2:-0.306736102045;HNF4A_NR2F1,2:-0.329872628578;IKZF1:-0.362486771205;NR1H4:-0.38442309524;MYOD1:-0.385958353353;NR5A1,2:-0.448751273478;ATF6:-0.480318259615;TFCP2:-0.49430160142;GATA6:-0.500408029912;AIRE:-0.503297758291;HSF1,2:-0.544070898443;TFAP4:-0.545527070242;NFE2:-0.575379822421;CDX1,2,4:-0.578695372708;TBP:-0.611713788295;TEF:-0.624790031604;SPI1:-0.629934882795;PAX3,7:-0.645070924896;ALX4:-0.650457443425;NFATC1..3:-0.658202404323;SPIB:-0.688999322179;FOX{I1,J2}:-0.708169665191;HNF1A:-0.72028271609;ETS1,2:-0.732220374936;FOSL2:-0.76812470744;SNAI1..3:-0.773032004936;PAX1,9:-0.784081370449;TP53:-0.856419634168;TEAD1:-0.861328192761;HLF:-0.8621174833;TBX4,5:-0.878559332507;FOS_FOS{B,L1}_JUN{B,D}:-0.903320680744;BACH2:-0.909690336673;XCPE1{core}:-0.954789897234;NKX2-2,8:-0.957361120518;TAL1_TCF{3,4,12}:-0.990324962914;POU2F1..3:-0.991811396167;NFKB1_REL_RELA:-1.06306685045;E2F1..5:-1.06858800071;RUNX1..3:-1.12062763434;HES1:-1.12125934907;HIF1A:-1.13884270984;ELK1,4_GABP{A,B1}:-1.2116928837;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.3268617574;ELF1,2,4:-1.33696545081;SRF:-1.41248025603;RXR{A,B,G}:-1.48770934708;MYB:-1.51858643467;ESR1:-1.61176321397;GLI1..3:-1.87563855039;RXRA_VDR{dimer}:-2.13237202703;STAT5{A,B}:-2.15350409373;NR6A1:-2.18265139772;EN1,2:-2.18559987555;ZNF148:-2.28144097071;HOX{A5,B5}:-2.54100827966;PPARG:-2.76133639911 | |top_motifs=SOX2:3.62590108079;SOX5:3.4978851229;NFIX:2.9743574287;REST:2.95051543414;GATA4:2.87000238447;NHLH1,2:2.77982191925;ATF2:2.73290360845;CUX2:2.66912391609;NKX3-2:2.61669252947;MYFfamily:2.61622000499;DBP:2.58715361436;FOXP3:2.53571623413;HBP1_HMGB_SSRP1_UBTF:2.52026269366;MTF1:2.49768084042;ZFP161:2.492362242;SOX17:2.46140285724;RREB1:2.42018751987;SOX{8,9,10}:2.32290717896;MED-1{core}:2.28729809636;MTE{core}:2.25206219923;OCT4_SOX2{dimer}:2.2062306044;NR3C1:2.20201626517;PRRX1,2:2.18793711057;JUN:2.15518370065;XBP1:2.12991312099;HIC1:2.05500281273;PRDM1:2.05310769558;LMO2:2.0183448015;NKX6-1,2:2.01763624114;RFX1:1.97402434803;ZBTB6:1.93065232656;TGIF1:1.89109090202;SMAD1..7,9:1.78073987893;NANOG:1.77991925372;FOXP1:1.77606867481;PDX1:1.75072798622;HOXA9_MEIS1:1.74406285457;GFI1B:1.71696948977;BPTF:1.69893489261;ZNF384:1.67443057145;GTF2I:1.66171280285;RFX2..5_RFXANK_RFXAP:1.64320432135;LEF1_TCF7_TCF7L1,2:1.62638452005;PAX6:1.62062995569;FOXM1:1.58734274438;POU6F1:1.46312731947;EGR1..3:1.43046949682;ARID5B:1.41293681372;TFAP2B:1.38366224533;ONECUT1,2:1.32927715547;ZBTB16:1.32394093911;KLF4:1.28772737829;RBPJ:1.2757383236;MZF1:1.27325056804;STAT1,3:1.25188733131;PATZ1:1.24417952259;STAT2,4,6:1.19549536173;RORA:1.19023679764;MAZ:1.18878235963;FOXD3:1.18710686871;AHR_ARNT_ARNT2:1.15875286121;T:1.15512386281;BREu{core}:1.15009609584;ESRRA:1.12948340122;MAFB:1.10787577973;GCM1,2:1.10559244657;HOX{A4,D4}:1.08986710453;AR:1.0679043972;FOX{F1,F2,J1}:0.985282615855;TFAP2{A,C}:0.956489061938;LHX3,4:0.951007380159;EP300:0.947262998909;NRF1:0.936638598952;PAX5:0.934186191449;IKZF2:0.927289558342;FOXL1:0.903015065433;MYBL2:0.894427644953;TLX2:0.875642354892;SP1:0.85308168348;TLX1..3_NFIC{dimer}:0.850223543355;FOX{D1,D2}:0.838570638964;ADNP_IRX_SIX_ZHX:0.809603085121;ZNF423:0.799992663123;CRX:0.791919628932;ALX1:0.779534740727;EBF1:0.76091051917;POU5F1:0.647630967511;FOXQ1:0.645186658805;CDC5L:0.642389790087;PAX4:0.626899021448;HOX{A6,A7,B6,B7}:0.624905363148;SREBF1,2:0.613538624715;ZNF143:0.607189492522;GZF1:0.586329894917;PAX2:0.575391379059;SPZ1:0.537085581016;CREB1:0.524007970561;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.511132406851;NKX2-3_NKX2-5:0.474071358429;PBX1:0.463136841625;GFI1:0.461498962851;HMX1:0.432716821572;POU3F1..4:0.430691359613;PITX1..3:0.424117518897;TFDP1:0.420090756766;IRF7:0.401782307197;TOPORS:0.381320086915;DMAP1_NCOR{1,2}_SMARC:0.377923596067;MEF2{A,B,C,D}:0.371537421764;ZEB1:0.351783440517;NKX3-1:0.310420435633;HMGA1,2:0.285937051502;HAND1,2:0.266829171384;NFIL3:0.225702008935;NKX2-1,4:0.199225143942;ATF5_CREB3:0.183351153057;ZNF238:0.116174913362;FOXO1,3,4:0.114816514106;NFE2L1:0.106359781155;ZIC1..3:0.0172196664448;POU1F1:-0.0257939947398;GTF2A1,2:-0.0303389693631;CEBPA,B_DDIT3:-0.0808676942558;PAX8:-0.102533879822;ATF4:-0.108330270346;NFY{A,B,C}:-0.11287819525;IRF1,2:-0.11571016363;FOXA2:-0.117105150954;YY1:-0.191686083531;EVI1:-0.217049130434;UFEwm:-0.235337338993;NFE2L2:-0.237202987047;FOXN1:-0.26246215033;bHLH_family:-0.288483699083;NANOG{mouse}:-0.306402310003;VSX1,2:-0.306736102045;HNF4A_NR2F1,2:-0.329872628578;IKZF1:-0.362486771205;NR1H4:-0.38442309524;MYOD1:-0.385958353353;NR5A1,2:-0.448751273478;ATF6:-0.480318259615;TFCP2:-0.49430160142;GATA6:-0.500408029912;AIRE:-0.503297758291;HSF1,2:-0.544070898443;TFAP4:-0.545527070242;NFE2:-0.575379822421;CDX1,2,4:-0.578695372708;TBP:-0.611713788295;TEF:-0.624790031604;SPI1:-0.629934882795;PAX3,7:-0.645070924896;ALX4:-0.650457443425;NFATC1..3:-0.658202404323;SPIB:-0.688999322179;FOX{I1,J2}:-0.708169665191;HNF1A:-0.72028271609;ETS1,2:-0.732220374936;FOSL2:-0.76812470744;SNAI1..3:-0.773032004936;PAX1,9:-0.784081370449;TP53:-0.856419634168;TEAD1:-0.861328192761;HLF:-0.8621174833;TBX4,5:-0.878559332507;FOS_FOS{B,L1}_JUN{B,D}:-0.903320680744;BACH2:-0.909690336673;XCPE1{core}:-0.954789897234;NKX2-2,8:-0.957361120518;TAL1_TCF{3,4,12}:-0.990324962914;POU2F1..3:-0.991811396167;NFKB1_REL_RELA:-1.06306685045;E2F1..5:-1.06858800071;RUNX1..3:-1.12062763434;HES1:-1.12125934907;HIF1A:-1.13884270984;ELK1,4_GABP{A,B1}:-1.2116928837;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.3268617574;ELF1,2,4:-1.33696545081;SRF:-1.41248025603;RXR{A,B,G}:-1.48770934708;MYB:-1.51858643467;ESR1:-1.61176321397;GLI1..3:-1.87563855039;RXRA_VDR{dimer}:-2.13237202703;STAT5{A,B}:-2.15350409373;NR6A1:-2.18265139772;EN1,2:-2.18559987555;ZNF148:-2.28144097071;HOX{A5,B5}:-2.54100827966;PPARG:-2.76133639911 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10168-103B6;search_select_hide=table117:FF:10168-103B6 | |||
}} | }} | ||
Latest revision as of 12:24, 3 June 2020
| Name: | thalamus - adult, donor10196 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13794 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13794
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13794
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0784 |
| 10 | 10 | 0.0595 |
| 100 | 100 | 0.406 |
| 101 | 101 | 0.432 |
| 102 | 102 | 0.977 |
| 103 | 103 | 0.0408 |
| 104 | 104 | 0.0857 |
| 105 | 105 | 0.149 |
| 106 | 106 | 0.0451 |
| 107 | 107 | 0.147 |
| 108 | 108 | 0.92 |
| 109 | 109 | 6.66711e-4 |
| 11 | 11 | 0.009 |
| 110 | 110 | 0.0367 |
| 111 | 111 | 0.248 |
| 112 | 112 | 0.462 |
| 113 | 113 | 0.233 |
| 114 | 114 | 0.234 |
| 115 | 115 | 0.812 |
| 116 | 116 | 0.125 |
| 117 | 117 | 0.00457 |
| 118 | 118 | 0.14 |
| 119 | 119 | 0.46 |
| 12 | 12 | 0.456 |
| 120 | 120 | 0.155 |
| 121 | 121 | 0.345 |
| 122 | 122 | 0.745 |
| 123 | 123 | 0.453 |
| 124 | 124 | 0.0474 |
| 125 | 125 | 0.68 |
| 126 | 126 | 0.0452 |
| 127 | 127 | 0.509 |
| 128 | 128 | 0.256 |
| 129 | 129 | 0.354 |
| 13 | 13 | 0.00219 |
| 130 | 130 | 0.0418 |
| 131 | 131 | 0.0106 |
| 132 | 132 | 0.491 |
| 133 | 133 | 5.98201e-4 |
| 134 | 134 | 0.643 |
| 135 | 135 | 0.139 |
| 136 | 136 | 6.98977e-4 |
| 137 | 137 | 0.434 |
| 138 | 138 | 0.899 |
| 139 | 139 | 0.342 |
| 14 | 14 | 0.907 |
| 140 | 140 | 0.82 |
| 141 | 141 | 0.7 |
| 142 | 142 | 0.81 |
| 143 | 143 | 0.0534 |
| 144 | 144 | 0.71 |
| 145 | 145 | 0.392 |
| 146 | 146 | 0.496 |
| 147 | 147 | 0.643 |
| 148 | 148 | 0.907 |
| 149 | 149 | 0.126 |
| 15 | 15 | 0.122 |
| 150 | 150 | 0.0947 |
| 151 | 151 | 0.915 |
| 152 | 152 | 0.0644 |
| 153 | 153 | 0.666 |
| 154 | 154 | 0.293 |
| 155 | 155 | 0.818 |
| 156 | 156 | 0.204 |
| 157 | 157 | 0.339 |
| 158 | 158 | 0.0888 |
| 159 | 159 | 0.0116 |
| 16 | 16 | 0.0309 |
| 160 | 160 | 0.276 |
| 161 | 161 | 0.285 |
| 162 | 162 | 0.489 |
| 163 | 163 | 0.916 |
| 164 | 164 | 0.00449 |
| 165 | 165 | 0.252 |
| 166 | 166 | 0.682 |
| 167 | 167 | 0.776 |
| 168 | 168 | 0.549 |
| 169 | 169 | 0.021 |
| 17 | 17 | 0.0634 |
| 18 | 18 | 0.05 |
| 19 | 19 | 0.358 |
| 2 | 2 | 0.788 |
| 20 | 20 | 0.104 |
| 21 | 21 | 0.0214 |
| 22 | 22 | 0.171 |
| 23 | 23 | 0.695 |
| 24 | 24 | 0.00729 |
| 25 | 25 | 0.578 |
| 26 | 26 | 3.42914e-4 |
| 27 | 27 | 0.821 |
| 28 | 28 | 0.821 |
| 29 | 29 | 0.00599 |
| 3 | 3 | 0.0399 |
| 30 | 30 | 0.908 |
| 31 | 31 | 0.997 |
| 32 | 32 | 0.00847 |
| 33 | 33 | 0.0669 |
| 34 | 34 | 0.65 |
| 35 | 35 | 0.548 |
| 36 | 36 | 0.411 |
| 37 | 37 | 0.0299 |
| 38 | 38 | 0.434 |
| 39 | 39 | 0.336 |
| 4 | 4 | 0.995 |
| 40 | 40 | 0.108 |
| 41 | 41 | 0.381 |
| 42 | 42 | 0.2 |
| 43 | 43 | 0.141 |
| 44 | 44 | 0.126 |
| 45 | 45 | 0.721 |
| 46 | 46 | 0.0493 |
| 47 | 47 | 0.0792 |
| 48 | 48 | 0.0325 |
| 49 | 49 | 0.421 |
| 5 | 5 | 0.738 |
| 50 | 50 | 0.269 |
| 51 | 51 | 0.39 |
| 52 | 52 | 0.74 |
| 53 | 53 | 0.665 |
| 54 | 54 | 0.477 |
| 55 | 55 | 0.896 |
| 56 | 56 | 0.459 |
| 57 | 57 | 0.56 |
| 58 | 58 | 0.562 |
| 59 | 59 | 0.0538 |
| 6 | 6 | 0.943 |
| 60 | 60 | 0.137 |
| 61 | 61 | 0.0701 |
| 62 | 62 | 0.361 |
| 63 | 63 | 0.216 |
| 64 | 64 | 0.207 |
| 65 | 65 | 0.33 |
| 66 | 66 | 0.122 |
| 67 | 67 | 0.253 |
| 68 | 68 | 0.414 |
| 69 | 69 | 0.91 |
| 7 | 7 | 0.13 |
| 70 | 70 | 0.0353 |
| 71 | 71 | 0.00768 |
| 72 | 72 | 0.389 |
| 73 | 73 | 0.0238 |
| 74 | 74 | 0.929 |
| 75 | 75 | 0.0163 |
| 76 | 76 | 0.167 |
| 77 | 77 | 0.12 |
| 78 | 78 | 0.003 |
| 79 | 79 | 0.477 |
| 8 | 8 | 0.0679 |
| 80 | 80 | 0.657 |
| 81 | 81 | 0.56 |
| 82 | 82 | 0.62 |
| 83 | 83 | 0.0223 |
| 84 | 84 | 0.551 |
| 85 | 85 | 0.568 |
| 86 | 86 | 0.127 |
| 87 | 87 | 9.24487e-5 |
| 88 | 88 | 0.545 |
| 89 | 89 | 0.219 |
| 9 | 9 | 0.326 |
| 90 | 90 | 0.142 |
| 91 | 91 | 0.817 |
| 92 | 92 | 0.979 |
| 93 | 93 | 0.96 |
| 94 | 94 | 0.201 |
| 95 | 95 | 0.0063 |
| 96 | 96 | 0.994 |
| 97 | 97 | 0.7 |
| 98 | 98 | 0.329 |
| 99 | 99 | 0.638 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13794
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001897 (dorsal plus ventral thalamus)
0001894 (diencephalon)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002784 (regional part of diencephalon)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001890 (forebrain)
0010225 (thalamic complex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010154 (human thalamus - adult donor sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
