FF:10200-103F2: Difference between revisions

Latest revision as of 13:55, 3 June 2020

Name:	penis, adult
Species:	Human (Homo sapiens)
Library ID:	CNhs12850
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	M
age	29
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	NA
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	R1234194-50
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005578

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12850		CAGE		DRX008705		DRR009577

Accession ID Hg19

Library id		BAM		CTSS
CNhs12850		DRZ001002		DRZ002387

Accession ID Hg38

Library id		BAM		CTSS
CNhs12850		DRZ012352		DRZ013737

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.549
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.308
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0.175
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.407
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.175
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0.175
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0588
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.199
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.691
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.299
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0.175
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.418
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0.396
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.89
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0.454
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.175
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.348
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0.175
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.87
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.175
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.299
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.175
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.299
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.516
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.254
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.354
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.717
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0304
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.131
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.577
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.516
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.542
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.175
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.396
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.299
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.215
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.119
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	1.143
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0.81
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.824
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.175
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.299
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0.299
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.175
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0.651
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12850

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00207
MA0003.1	MA0003.1	0.191
MA0004.1	MA0004.1	0.00111
MA0006.1	MA0006.1	0.237
MA0007.1	MA0007.1	0.731
MA0009.1	MA0009.1	0.471
MA0014.1	MA0014.1	0.18
MA0017.1	MA0017.1	0.72
MA0018.2	MA0018.2	7.08182e-4
MA0019.1	MA0019.1	0.327
MA0024.1	MA0024.1	0.00365
MA0025.1	MA0025.1	0.0767
MA0027.1	MA0027.1	0.682
MA0028.1	MA0028.1	4.65241e-12
MA0029.1	MA0029.1	0.395
MA0030.1	MA0030.1	0.942
MA0031.1	MA0031.1	0.996
MA0035.2	MA0035.2	0.0164
MA0038.1	MA0038.1	9.3689e-4
MA0039.2	MA0039.2	0.00412
MA0040.1	MA0040.1	0.162
MA0041.1	MA0041.1	0.616
MA0042.1	MA0042.1	0.721
MA0043.1	MA0043.1	4.25891e-6
MA0046.1	MA0046.1	0.00242
MA0047.2	MA0047.2	0.952
MA0048.1	MA0048.1	0.0205
MA0050.1	MA0050.1	0.119
MA0051.1	MA0051.1	0.0583
MA0052.1	MA0052.1	5.62318e-15
MA0055.1	MA0055.1	1.06225e-4
MA0057.1	MA0057.1	0.484
MA0058.1	MA0058.1	5.92645e-5
MA0059.1	MA0059.1	2.19757e-4
MA0060.1	MA0060.1	2.76527e-12
MA0061.1	MA0061.1	6.62717e-6
MA0062.2	MA0062.2	1.45269e-19
MA0065.2	MA0065.2	0.723
MA0066.1	MA0066.1	0.317
MA0067.1	MA0067.1	0.00663
MA0068.1	MA0068.1	0.999
MA0069.1	MA0069.1	0.31
MA0070.1	MA0070.1	0.162
MA0071.1	MA0071.1	0.94
MA0072.1	MA0072.1	0.238
MA0073.1	MA0073.1	0.758
MA0074.1	MA0074.1	0.467
MA0076.1	MA0076.1	1.18672e-13
MA0077.1	MA0077.1	0.144
MA0078.1	MA0078.1	0.462
MA0079.2	MA0079.2	0.997
MA0080.2	MA0080.2	9.90333e-7
MA0081.1	MA0081.1	0.00738
MA0083.1	MA0083.1	1.2164e-4
MA0084.1	MA0084.1	0.931
MA0087.1	MA0087.1	0.85
MA0088.1	MA0088.1	0.0502
MA0090.1	MA0090.1	0.293
MA0091.1	MA0091.1	0.243
MA0092.1	MA0092.1	0.222
MA0093.1	MA0093.1	4.57695e-4
MA0099.2	MA0099.2	1.41045e-22
MA0100.1	MA0100.1	0.00278
MA0101.1	MA0101.1	5.95194e-7
MA0102.2	MA0102.2	0.00171
MA0103.1	MA0103.1	0.391
MA0104.2	MA0104.2	4.76039e-6
MA0105.1	MA0105.1	0.0029
MA0106.1	MA0106.1	0.196
MA0107.1	MA0107.1	1.06253e-7
MA0108.2	MA0108.2	1.31603e-8
MA0111.1	MA0111.1	0.991
MA0112.2	MA0112.2	0.0149
MA0113.1	MA0113.1	0.0422
MA0114.1	MA0114.1	0.256
MA0115.1	MA0115.1	0.987
MA0116.1	MA0116.1	0.156
MA0117.1	MA0117.1	0.15
MA0119.1	MA0119.1	0.138
MA0122.1	MA0122.1	0.397
MA0124.1	MA0124.1	0.799
MA0125.1	MA0125.1	0.774
MA0131.1	MA0131.1	0.0459
MA0135.1	MA0135.1	0.618
MA0136.1	MA0136.1	3.40988e-11
MA0137.2	MA0137.2	0.108
MA0138.2	MA0138.2	0.0387
MA0139.1	MA0139.1	0.0784
MA0140.1	MA0140.1	0.00115
MA0141.1	MA0141.1	0.877
MA0142.1	MA0142.1	0.0609
MA0143.1	MA0143.1	0.449
MA0144.1	MA0144.1	0.32
MA0145.1	MA0145.1	0.0842
MA0146.1	MA0146.1	0.164
MA0147.1	MA0147.1	3.82194e-6
MA0148.1	MA0148.1	0.962
MA0149.1	MA0149.1	0.0866
MA0150.1	MA0150.1	3.57868e-6
MA0152.1	MA0152.1	0.382
MA0153.1	MA0153.1	0.848
MA0154.1	MA0154.1	0.788
MA0155.1	MA0155.1	0.179
MA0156.1	MA0156.1	8.5815e-15
MA0157.1	MA0157.1	0.675
MA0159.1	MA0159.1	0.774
MA0160.1	MA0160.1	0.541
MA0162.1	MA0162.1	0.176
MA0163.1	MA0163.1	0.0908
MA0164.1	MA0164.1	0.665
MA0258.1	MA0258.1	0.0479
MA0259.1	MA0259.1	0.0042

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12850

Novel motif	Logo	P-value
1	1	0.648
10	10	0.282
100	100	0.31
101	101	0.513
102	102	0.513
103	103	0.494
104	104	0.681
105	105	0.459
106	106	0.156
107	107	0.0154
108	108	0.0811
109	109	0.0521
11	11	0.527
110	110	0.697
111	111	0.848
112	112	0.135
113	113	0.702
114	114	0.862
115	115	0.00609
116	116	0.0279
117	117	0.0648
118	118	0.0219
119	119	0.0782
12	12	0.475
120	120	0.241
121	121	0.546
122	122	0.228
123	123	0.631
124	124	0.194
125	125	0.862
126	126	0.494
127	127	0.798
128	128	0.023
129	129	0.94
13	13	0.28
130	130	0.398
131	131	0.416
132	132	0.0107
133	133	0.00402
134	134	0.221
135	135	0.0575
136	136	0.0594
137	137	0.729
138	138	0.42
139	139	0.0953
14	14	0.745
140	140	0.665
141	141	0.78
142	142	0.597
143	143	0.17
144	144	0.686
145	145	0.868
146	146	0.557
147	147	0.014
148	148	0.739
149	149	0.212
15	15	0.133
150	150	0.904
151	151	0.607
152	152	0.576
153	153	0.24
154	154	0.892
155	155	0.6
156	156	0.755
157	157	0.55
158	158	0.512
159	159	0.182
16	16	0.593
160	160	0.537
161	161	0.434
162	162	0.635
163	163	0.279
164	164	0.566
165	165	0.0636
166	166	0.0801
167	167	0.339
168	168	0.817
169	169	0.0982
17	17	0.919
18	18	0.449
19	19	0.00899
2	2	0.00312
20	20	0.0212
21	21	0.444
22	22	0.57
23	23	0.146
24	24	0.185
25	25	0.628
26	26	0.399
27	27	0.792
28	28	0.469
29	29	0.0751
3	3	0.753
30	30	0.046
31	31	0.416
32	32	0.079
33	33	0.234
34	34	0.317
35	35	0.871
36	36	0.0205
37	37	0.969
38	38	0.898
39	39	0.186
4	4	0.364
40	40	0.0269
41	41	0.134
42	42	0.335
43	43	0.735
44	44	0.0154
45	45	0.142
46	46	0.9
47	47	0.384
48	48	0.371
49	49	0.774
5	5	0.709
50	50	0.595
51	51	0.489
52	52	0.0911
53	53	0.888
54	54	0.782
55	55	0.946
56	56	0.892
57	57	0.802
58	58	0.963
59	59	0.233
6	6	0.509
60	60	0.287
61	61	0.375
62	62	0.747
63	63	0.388
64	64	0.48
65	65	0.323
66	66	2.60753e-4
67	67	0.986
68	68	0.242
69	69	0.305
7	7	0.578
70	70	0.793
71	71	0.429
72	72	0.638
73	73	0.263
74	74	0.493
75	75	0.143
76	76	0.0893
77	77	0.0168
78	78	0.81
79	79	0.0447
8	8	0.799
80	80	0.305
81	81	0.294
82	82	0.14
83	83	0.78
84	84	0.879
85	85	0.0241
86	86	0.596
87	87	0.0141
88	88	0.762
89	89	0.0455
9	9	0.829
90	90	0.445
91	91	0.0573
92	92	0.202
93	93	0.285
94	94	0.132
95	95	0.00303
96	96	0.681
97	97	0.675
98	98	0.365
99	99	0.0285

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12850

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010200 human penis - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000989 (penis)
0000479 (tissue)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0008811 (intromittent organ)
0003133 (reproductive organ)
0010317 (germ layer / neural crest derived structure)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010200 (human penis - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0004874 (somatopleure)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005578
+|accession_numbers=CAGE;DRX008705;DRR009577;DRZ001002;DRZ002387;DRZ012352;DRZ013737
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000989,UBERON:0000479,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0008811,UBERON:0003133,UBERON:0010317,UBERON:0003101,UBERON:0000079
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:52437488..52437507,+!p2@NR4A1!2.18!150.35!NR4A1;;chr20:62680984..62680999,-!p1@SOX18!1.92!107.18!SOX18;;chr11:34642612..34642646,+!p1@EHF!1.85!70.46!EHF;;chr15:42749722..42749739,-!p2@ZFP106!1.83!115.62!ZFP106;;chr19:46801639..46801699,+!p1@HIF3A!1.71!50.61!HIF3A;;chr21:39870339..39870443,-!p1@ERG!1.70!48.63!ERG;;chr11:113930425..113930471,+!p1@ZBTB16!1.60!55.58!ZBTB16;;chr1:40105299..40105326,-!p1@HEYL!1.57!36.22!HEYL;;chr1:170632285..170632309,+!p1@PRRX1!1.51!35.73!PRRX1;;chr8:10588010..10588030,-!p1@SOX7!1.50!30.77!SOX7;;chr5:158526917..158526932,-!p1@EBF1!1.47!69.97!EBF1;;chr16:86544113..86544145,+!p1@FOXF1!1.45!33.74!FOXF1;;chrY:21906594..21906622,-!p1@KDM5D!1.45!27.29!KDM5D;;chr4:57547454..57547469,-!p1@HOPX!1.44!26.80!HOPX;;chr1:170633348..170633399,+!p2@PRRX1!1.42!34.24!PRRX1;;chr1:151804244..151804310,-!p1@RORC!1.39!23.82!RORC;;chr2:19558373..19558392,-!p1@OSR1!1.38!62.03!OSR1;;chr1:170633058..170633084,+!p5@PRRX1!1.36!21.83!PRRX1;;chr12:81101404..81101421,+!p1@MYF6!1.36!21.83!MYF6;;chr17:80797886..80797906,-!p1@ZNF750!1.36!21.83!ZNF750;;chr20:50179368..50179392,-!p2@NFATC2!1.34!26.80!NFATC2;;chr17:53342311..53342400,+!p1@HLF!1.34!23.82!HLF;;chr1:201979743..201979762,+!p1@ELF3!1.34!20.84!ELF3;;chr1:203055129..203055147,-!p1@MYOG!1.34!20.84!MYOG;;chr7:15726296..15726315,-!p1@MEOX2!1.34!20.84!MEOX2;;chr22:38380543..38380569,-!p1@SOX10!1.31!19.35!SOX10;;chr1:170633262..170633285,+!p3@PRRX1!1.30!21.83!PRRX1;;chr3:21792682..21792720,-!p1@ZNF385D!1.30!18.86!ZNF385D;;chr12:52445218..52445237,+!p1@NR4A1!1.29!226.27!NR4A1;;chr11:129245526..129245553,+!p1@BARX2!1.28!17.86!BARX2;;chr5:71803177..71803255,-!p1@ZNF366!1.28!17.86!ZNF366;;chr6:34524093..34524135,-!p1@SPDEF!1.28!17.86!SPDEF;;chr19:16435625..16435682,+!p1@KLF2!1.27!552.28!KLF2;;chr14:61116183..61116208,-!p1@SIX1!1.27!66.00!SIX1;;chr6:126070769..126070801,+!p1@HEY2!1.27!20.34!HEY2;;chr5:50679228..50679288,+!p1@ISL1!1.26!17.37!ISL1;;chr2:145277882..145277967,-!p3@ZEB2!1.25!28.78!ZEB2;;chr3:169381420..169381535,-!p1@MECOM!1.25!19.85!MECOM;;chr22:19748231..19748317,+!p1@TBX1!1.25!16.87!TBX1;;chr22:41763452..41763466,+!p2@TEF!1.25!16.87!TEF;;chr7:15726243..15726293,-!p2@MEOX2!1.25!16.87!MEOX2;;chr7:73038839..73038862,-!p1@MLXIPL!1.25!16.87!MLXIPL;;chr8:55370487..55370503,+!p1@SOX17!1.25!16.87!SOX17;;chr1:201979703..201979721,+!p2@ELF3!1.25!16.87!ELF3;;chr6:1312325..1312340,+!p1@FOXQ1!1.24!26.80!FOXQ1;;chr11:113930401..113930422,+!p3@ZBTB16!1.24!16.37!ZBTB16;;chr1:61548374..61548415,+!p4@NFIA!1.23!29.28!NFIA;;chr3:12330560..12330579,+!p1@PPARG!1.23!18.36!PPARG;;chr16:54320617..54320643,-!p3@IRX3!1.21!19.35!IRX3;;chr2:45236540..45236577,-!p1@SIX2!1.21!15.38!SIX2;;chr3:189507432..189507459,+!p1@TP63!1.21!15.38!TP63;;chr8:25902876..25902936,-!p1@EBF2!1.21!15.38!EBF2;;chr6:1389789..1389821,+!p1@FOXF2!1.20!20.34!FOXF2;;chr6:134210243..134210257,+!p1@TCF21!1.20!14.89!TCF21;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.20!14.89!HOXC5;;chr12:81101472..81101483,+!p2@MYF6!1.20!14.89!MYF6;;chr15:96873984..96873999,+!p3@NR2F2!1.19!105.69!NR2F2;;chr6:19837592..19837621,+!p1@ID4!1.19!86.84!ID4;;chr7:27192185..27192209,-!p1@HOXA3!1.19!14.39!HOXA3;;chr16:85932760..85932775,+!p1@IRF8!1.19!14.39!IRF8;;chr16:86600426..86600441,+!p1@FOXC2!1.16!33.25!FOXC2;;chr6:152126830..152126847,+!p4@ESR1!1.16!13.40!ESR1;;chr2:223163706..223163730,-!p1@PAX3!1.14!12.90!PAX3;;chr7:44143925..44143970,+!p1@AEBP1!1.13!274.40!AEBP1;;chr11:113930291..113930339,+!p2@ZBTB16!1.13!20.34!ZBTB16;;chr7:77469439..77469459,+!p6@PHTF2!1.13!12.41!PHTF2;;chr17:6926362..6926377,+!p1@BCL6B!1.13!12.41!BCL6B;;chr5:88178983..88179012,-!p1@MEF2C!1.12!93.29!MEF2C;;chr12:26277956..26277980,-!p1@BHLHE41!1.12!43.67!BHLHE41;;chr6:10412600..10412637,-!p1@TFAP2A!1.12!20.34!TFAP2A;;chr16:79634624..79634642,-!p1@MAF!1.11!47.14!MAF;;chr12:96588368..96588394,+!p3@ELK3!1.11!31.76!ELK3;;chr15:96869255..96869291,+!p6@NR2F2!1.11!21.83!NR2F2;;chr10:8096631..8096660,+!p1@GATA3!1.11!14.39!GATA3;;chr2:176969228..176969260,+!p1@HOXD11!1.11!11.91!HOXD11;;chr19:33793430..33793447,-!p1@CEBPA!1.09!48.13!CEBPA;;chr15:101069113..101069169,-!p1@CERS3!1.09!11.41!CERS3;;chr17:59529743..59529798,+!p1@TBX4!1.09!11.41!TBX4;;chr7:27205136..27205164,-!p1@HOXA9!1.09!11.41!HOXA9;;chr9:1050331..1050363,+!p1@DMRT2!1.09!11.41!DMRT2;;chr17:7493405..7493419,-!p1@SOX15!1.08!10.92!SOX15;;chr15:61521417..61521460,-!p2@RORA!1.07!24.31!RORA;;chr16:79634595..79634620,-!p2@MAF!1.07!19.85!MAF;;chr3:21792585..21792625,-!p2@ZNF385D!1.07!11.91!ZNF385D;;chr3:189349162..189349207,+!p2@TP63!1.06!10.42!TP63;;chr11:125034640..125034655,+!p1@PKNOX2!1.06!10.42!PKNOX2;;chr7:96654133..96654150,-!p1@DLX5!1.06!10.42!DLX5;;chr20:39317868..39317884,-!p1@MAFB!1.04!118.59!MAFB;;chr9:114287433..114287513,+!p1@ZNF483!1.04!26.30!ZNF483;;chr16:79633894..79633954,-!p3@MAF!1.04!19.35!MAF;;chr5:158526459..158526481,-!p2@EBF1!1.04!13.40!EBF1;;chr3:126076242..126076257,-!p1@KLF15!1.04!12.41!KLF15;;chr2:122042770..122042785,-!p1@TFCP2L1!1.04!9.92!TFCP2L1;;chr3:21792631..21792665,-!p3@ZNF385D!1.04!9.92!ZNF385D;;chr13:73633131..73633149,+!p1@KLF5!1.03!105.20!KLF5;;chr9:102584159..102584174,+!p2@NR4A3!1.03!17.86!NR4A3;;chr19:13134772..13134822,+!p2@NFIX!1.03!14.39!NFIX;;chr20:51588873..51588953,+!p1@TSHZ2!1.03!12.90!TSHZ2;;chr20:55204351..55204377,+!p1@TFAP2C!1.03!12.41!TFAP2C;;chr9:102584262..102584276,+!p1@NR4A3!1.02!21.34!NR4A3;;chr1:170632959..170632987,+!p4@PRRX1!1.02!10.42!PRRX1;;chr21:38071430..38071456,+!p1@SIM2!1.02!9.43!SIM2;;chr6:152126790..152126828,+!p3@ESR1!1.02!9.43!ESR1;;chr17:41739283..41739297,-!p1@MEOX1!1.02!9.43!MEOX1;;chr6:85474299..85474324,-!p1@TBX18!1.00!16.37!TBX18;;chrX:107018969..107019024,-!p6@TSC22D3!1.00!12.41!TSC22D3;;chr11:16629261..16629284,-!p1@SOX6!1.00!8.93!SOX6;;chr11:34642656..34642667,+!p2@EHF!1.00!8.93!EHF;;chr14:38064429..38064486,-!p1@FOXA1!1.00!8.93!FOXA1;;chr3:128212033..128212051,-!p1@GATA2!1.00!8.93!GATA2;;chr9:110252035..110252057,-!p1@KLF4!0.98!138.94!KLF4;;chr7:44143978..44143989,+!p2@AEBP1!0.98!15.88!AEBP1;;chr8:99956662..99956684,+!p1@OSR2!0.98!13.40!OSR2;;chr15:76629123..76629151,+!p1@ISL2!0.98!9.43!ISL2;;chr10:63809013..63809041,+!p3@ARID5B!0.97!47.64!ARID5B;;chr3:69788576..69788648,+!p1@MITF!0.97!45.16!MITF;;chr3:114343768..114343822,-!p1@ZBTB20!0.97!37.71!ZBTB20;;chr12:26277817..26277863,-!p2@BHLHE41!0.97!11.41!BHLHE41;;chr12:10870927..10870966,-!p5@CSDA!0.97!8.44!CSDA;;chr12:54378923..54378966,+!p1@HOXC10!0.97!8.44!HOXC10;;chr2:176969179..176969226,+!p2@HOXD11!0.97!8.44!HOXD11;;chr9:124991204..124991246,-!p1@LHX6!0.97!8.44!LHX6;;chr16:67198633..67198671,+!p1@HSF4!0.97!8.44!HSF4;;chr7:63505799..63505904,+!p1@ZNF727!0.97!8.44!ZNF727;;chr17:1959369..1959388,+!p2@HIC1!0.96!21.83!HIC1;;chr1:61548225..61548299,+!p1@NFIA!0.95!106.19!NFIA;;chr1:209979467..209979494,-!p1@IRF6!0.95!8.93!IRF6;;chr6:152128810..152128827,+!p2@ESR1!0.95!7.94!ESR1;;chr7:27239740..27239759,-!p2@HOXA13!0.95!7.94!HOXA13;;chrY:21906761..21906810,-!p2@KDM5D!0.95!7.94!KDM5D;;chr9:14314946..14314983,-!p8@NFIB!0.95!7.94!NFIB;;chr18:22932080..22932170,-!p1@ZNF521!0.94!33.74!ZNF521;;chr3:114819124..114819200,-!p3@ZBTB20!0.94!18.36!ZBTB20;;chr8:60031682..60031710,-!p2@TOX!0.94!12.90!TOX;;chr12:10865870..10865888,-!p6@CSDA!0.93!10.42!CSDA;;chr11:34645791..34645836,+!p3@EHF!0.93!7.44!EHF;;chr12:54393880..54393962,+!p1@HOXC9!0.93!7.44!HOXC9;;chr13:37494275..37494304,-!p2@SMAD9!0.93!7.44!SMAD9;;chr5:158527104..158527135,-!p4@EBF1!0.93!7.44!EBF1;;chrY:2803415..2803468,+!p1@ZFY!0.93!7.44!ZFY;;chr16:79634581..79634592,-!p4@MAF!0.93!7.44!MAF;;chr19:13135582..13135600,+!p3@NFIX!0.93!7.44!NFIX;;chr19:22193731..22193751,-!p1@ZNF208!0.93!7.44!ZNF208;;chr2:176994408..176994492,+!p1@HOXD8!0.93!7.44!HOXD8;;chr1:10856665..10856683,-!p4@CASZ1!0.93!7.44!CASZ1;;chrX:106960180..106960197,-!p2@TSC22D3!0.92!28.78!TSC22D3;;chr3:114866084..114866118,-!p2@ZBTB20!0.92!27.29!ZBTB20;;chr7:113726357..113726443,+!p1@FOXP2!0.92!12.90!FOXP2;;chr15:60884706..60884743,-!p1@RORA!0.91!38.21!RORA;;chr1:61547894..61547968,+!p2@NFIA!0.91!21.34!NFIA;;chr8:77593474..77593612,+!p1@ZFHX4!0.90!30.77!ZFHX4;;chr15:42743341..42743377,-!p3@ZFP106!0.90!11.91!ZFP106;;chr16:54320646..54320672,-!p2@IRX3!0.90!10.92!IRX3;;chr1:214161272..214161322,+!p1@PROX1!0.90!9.92!PROX1;;chr7:44143997..44144008,+!p3@AEBP1!0.90!8.93!AEBP1;;chr5:158526756..158526797,-!p3@EBF1!0.90!6.95!EBF1;;chr11:16627528..16627550,-!p7@SOX6!0.90!6.95!SOX6;;chr2:177001290..177001315,+!p1@HOXD3!0.90!6.95!HOXD3;;chr16:67198683..67198698,+!p2@HSF4!0.90!6.95!HSF4;;chr1:61548069..61548102,+!p3@NFIA!0.89!16.87!NFIA;;chr12:125003087..125003141,-!p4@NCOR2!0.89!8.93!NCOR2;;chr6:10415276..10415341,-!p2@TFAP2A!0.89!8.44!TFAP2A;;chr16:54320675..54320715,-!p1@IRX3!0.88!14.89!IRX3;;chr15:57511609..57511651,+!p2@TCF12!0.88!11.41!TCF12;;chr12:115121962..115121987,-!p1@TBX3!0.87!56.57!TBX3;;chr17:59477233..59477263,+!p1@TBX2!0.87!20.84!TBX2;;chr3:24536253..24536328,-!p1@THRB!0.87!12.41!THRB;;chrX:107019163..107019179,-!p7@TSC22D3!0.87!7.44!TSC22D3;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.87!6.95!GLIS1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.87!6.45!PEG3;;chr1:119530493..119530572,-!p1@TBX15!0.87!6.45!TBX15;;chr20:30433396..30433414,-!p1@FOXS1!0.87!6.45!FOXS1;;chr9:132427883..132427951,+!p2@PRRX2!0.87!6.45!PRRX2;;chr5:2751762..2751784,-!p1@IRX2!0.87!6.45!IRX2;;chr7:100065686..100065701,-!p2@TSC22D4!0.87!6.45!TSC22D4;;chr7:27196267..27196311,-!p1@HOXA7!0.87!6.45!HOXA7;;chr7:27205106..27205134,-!p2@HOXA9!0.87!6.45!HOXA9;;chr7:27224795..27224840,-!p2@HOXA11!0.87!6.45!HOXA11;;chr8:93115274..93115323,-!p4@RUNX1T1!0.87!6.45!RUNX1T1;;chr10:119302232..119302265,+!p1@EMX2!0.87!6.45!EMX2;;chr10:131762504..131762555,-!p1@EBF3!0.87!6.45!EBF3;;chr10:28034739..28034756,-!p1@MKX!0.87!6.45!MKX;;chr11:12766597..12766618,+!p11@TEAD1!0.87!6.45!TEAD1;;chr2:176969124..176969155,+!p5@HOXD11!0.87!6.45!HOXD11;;chr4:174451370..174451387,-!p1@HAND2!0.87!6.45!HAND2;;chr18:45935720..45935772,-!p1@ZBTB7C!0.87!6.45!ZBTB7C;;chr8:23540441..23540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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004876
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0004874,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/penis%252c%2520adult.CNhs12850.10200-103F2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/penis%252c%2520adult.CNhs12850.10200-103F2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/penis%252c%2520adult.CNhs12850.10200-103F2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/penis%252c%2520adult.CNhs12850.10200-103F2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/penis%252c%2520adult.CNhs12850.10200-103F2.hg38.nobarcode.ctss.bed.gz
 |id=FF:10200-103F2
 |is_a=EFO:0002091;;FF:0010200
 |is_obsolete=
+|library_id=CNhs12850
+|library_id_phase_based=2:CNhs12850
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10200
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10200
 |name=penis, adult
 |namespace=FANTOM5
@@ Line 45: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12850,LSID973,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=103
 |rna_catalog_number=R1234194-50
@@ Line 59: / Line 78: @@
 |rna_tube_id=103F2
 |rna_weight_ug=50
-|sample_age=M
+|sample_age=29
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 75: / Line 95: @@
 |sample_id=10200
 |sample_note=
-|sample_sex=29
+|sample_sex=M
 |sample_species=Human (Homo sapiens)
 |sample_strain=
@@ Line 81: / Line 101: @@
 |top_motifs=MEF2{A,B,C,D}:5.04200429684;NR1H4:4.77835177103;SRF:3.23082510417;GATA4:3.14199051793;NFE2L1:3.06315601092;IKZF2:2.83230630803;SPZ1:2.78795071407;NR5A1,2:2.77745836688;AR:2.74456510021;UFEwm:2.73563296707;HOX{A4,D4}:2.71177910749;TBP:2.58641979555;MYBL2:2.46038028559;ZNF384:2.41782236488;ESR1:2.38290618288;KLF4:2.33238617583;NKX6-1,2:2.30460159222;FOXO1,3,4:2.26250625569;TFAP4:2.24709047287;GCM1,2:2.19778874512;PDX1:2.1806295055;TFAP2{A,C}:2.16171284236;POU6F1:2.13110485235;NR3C1:2.01161914553;SMAD1..7,9:1.9984371604;TFCP2:1.95401377024;GLI1..3:1.94440783233;RREB1:1.92384359984;XBP1:1.85200367003;TBX4,5:1.82888620594;ZIC1..3:1.81123853613;FOXL1:1.7596339054;PRDM1:1.75018203825;SOX5:1.69804187918;TLX1..3_NFIC{dimer}:1.66910345561;EVI1:1.59061367671;POU1F1:1.55230669649;GTF2A1,2:1.53422942829;MAFB:1.52018502569;HAND1,2:1.50203404811;RBPJ:1.4804829681;NR6A1:1.44470474045;NHLH1,2:1.43547223157;NKX3-2:1.42391444763;PAX6:1.39915391082;HSF1,2:1.37572153933;NFATC1..3:1.33752015544;TGIF1:1.31807648287;MAZ:1.27329423458;MYOD1:1.27035888546;CDC5L:1.25593291774;FOXQ1:1.25147685906;PATZ1:1.24515701508;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.21492419905;SNAI1..3:1.21199151016;GTF2I:1.20173605303;NKX2-2,8:1.19471562013;MYFfamily:1.17985509854;TLX2:1.17252030872;HIC1:1.158054034;ESRRA:1.12811877375;MTE{core}:1.11592181726;POU3F1..4:1.11205250368;HMX1:1.09989306497;ALX4:1.09940300579;ZNF423:1.08553669848;RXR{A,B,G}:1.0588133144;ATF2:1.04616516015;IRF7:1.02394986251;MED-1{core}:1.00487674962;ZNF238:1.00373399551;ALX1:0.992878308115;GFI1B:0.986847176173;MZF1:0.95208722171;EP300:0.944047879119;TEAD1:0.939840260717;BPTF:0.910061546111;FOX{D1,D2}:0.908732956265;CDX1,2,4:0.906016708451;SP1:0.886020007587;ZBTB16:0.878597017792;MTF1:0.876772632865;HBP1_HMGB_SSRP1_UBTF:0.870140982989;NFIX:0.868457677168;HES1:0.829400763356;FOXM1:0.822512006183;FOXP3:0.820250776305;LMO2:0.817796550622;FOXP1:0.7841381813;PITX1..3:0.688390442492;EGR1..3:0.679228610225;TAL1_TCF{3,4,12}:0.676007185056;TFAP2B:0.636710710387;NKX2-1,4:0.582417831183;T:0.581801066304;IKZF1:0.57642956398;PAX5:0.527773425385;TP53:0.485688481992;PAX1,9:0.467818771874;STAT2,4,6:0.461250683805;XCPE1{core}:0.424456855154;HMGA1,2:0.42235800376;YY1:0.38312415246;TOPORS:0.35600581781;ZEB1:0.354877619022;STAT5{A,B}:0.316822426259;RXRA_VDR{dimer}:0.300176410436;REST:0.298412087751;HOXA9_MEIS1:0.279542317122;ATF6:0.25791627555;ARID5B:0.255817684061;ZBTB6:0.237552485512;FOXD3:0.231156612699;EBF1:0.217727658175;NKX3-1:0.186654081593;ZFP161:0.165997701961;TEF:0.108694766046;IRF1,2:0.0799477423919;HNF4A_NR2F1,2:0.0750820154472;POU5F1:0.0461031703406;ATF4:0.0452601132234;PAX3,7:0.0103678052841;CUX2:-0.0607188580789;ZNF148:-0.0747951759324;SOX17:-0.0789936803091;NKX2-3_NKX2-5:-0.102342732423;BREu{core}:-0.102887523163;ETS1,2:-0.15302475859;FOX{F1,F2,J1}:-0.175402721133;SPI1:-0.178501512461;FOXN1:-0.193446503775;PPARG:-0.197312147915;SREBF1,2:-0.210322466613;EN1,2:-0.219131639404;JUN:-0.234737890429;STAT1,3:-0.241013048054;RFX2..5_RFXANK_RFXAP:-0.289947800479;SOX{8,9,10}:-0.310156616802;CEBPA,B_DDIT3:-0.310267499243;ONECUT1,2:-0.360945313157;FOX{I1,J2}:-0.366984682862;DMAP1_NCOR{1,2}_SMARC:-0.370621054793;LEF1_TCF7_TCF7L1,2:-0.396405285576;PBX1:-0.405160488535;SPIB:-0.411407207649;FOSL2:-0.441005028944;PAX2:-0.461692062993;LHX3,4:-0.464609123314;NANOG{mouse}:-0.494616534496;FOXA2:-0.517237266584;GZF1:-0.593424312037;HNF1A:-0.627589871448;ATF5_CREB3:-0.642238044074;NFE2:-0.652892975066;AIRE:-0.654318996023;NFKB1_REL_RELA:-0.655482000955;NFIL3:-0.657873210116;ZNF143:-0.693877562361;RFX1:-0.711501067267;HOX{A6,A7,B6,B7}:-0.771460324336;CREB1:-0.805174875431;HLF:-0.821561459245;POU2F1..3:-0.861922164003;SOX2:-0.874091508268;FOS_FOS{B,L1}_JUN{B,D}:-0.898628301261;ADNP_IRX_SIX_ZHX:-0.920326468347;PAX4:-0.948745902153;RUNX1..3:-0.955866641824;GFI1:-1.03278446435;ELF1,2,4:-1.0340009546;BACH2:-1.04676721763;NANOG:-1.08423764722;E2F1..5:-1.10170321082;NRF1:-1.1266088566;AHR_ARNT_ARNT2:-1.13971708912;NFE2L2:-1.15085384264;GATA6:-1.20489410167;TFDP1:-1.20553115108;RORA:-1.25807279628;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.30263081767;NFY{A,B,C}:-1.33326216348;bHLH_family:-1.36045111018;OCT4_SOX2{dimer}:-1.38345228802;HOX{A5,B5}:-1.45477164695;MYB:-1.90526070979;ELK1,4_GABP{A,B1}:-1.95885161762;CRX:-1.97702096358;DBP:-2.01305414402;VSX1,2:-2.11006139684;PAX8:-2.25679402019;PRRX1,2:-2.56887432295;HIF1A:-2.61109438576
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10200-103F2;search_select_hide=table117:FF:10200-103F2
 }}

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FF:10200-103F2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 13:55, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0